RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 BCL11AQ9H165 835 aa27.11■■□□□ 1.93
VTI1B-201ENST00000216456 APBB1O00213 710 aa27.1■■□□□ 1.93
VTI1B-201ENST00000216456 TBC1D12O60347 775 aa27.1■■□□□ 1.93
VTI1B-201ENST00000216456 JAG1P78504 1218 aa27.1■■□□□ 1.93
VTI1B-201ENST00000216456 KIF22Q14807 665 aa27.1■■□□□ 1.93
VTI1B-201ENST00000216456 AACSQ86V21 672 aa27.1■■□□□ 1.93
VTI1B-201ENST00000216456 MAST2Q6P0Q8 1798 aa27.09■■□□□ 1.93
VTI1B-201ENST00000216456 SIRT2Q8IXJ6 389 aa27.09■■□□□ 1.93
VTI1B-201ENST00000216456 KIAA0100Q14667 2235 aaKnown RBP27.09■■□□□ 1.93
VTI1B-201ENST00000216456 SIPA1L1O43166 1804 aa27.09■■□□□ 1.93
VTI1B-201ENST00000216456 BCRP11274 1271 aa27.08■■□□□ 1.93
VTI1B-201ENST00000216456 PPP4CP60510 307 aa27.08■■□□□ 1.93
VTI1B-201ENST00000216456 TREML2Q5T2D2 321 aa27.08■■□□□ 1.93
VTI1B-201ENST00000216456 MIGA1Q8NAN2 632 aa27.08■■□□□ 1.93
VTI1B-201ENST00000216456 PARK7Q99497 189 aaKnown RBP27.08■■□□□ 1.93
VTI1B-201ENST00000216456 NOL10Q9BSC4 688 aaKnown RBP27.08■■□□□ 1.93
VTI1B-201ENST00000216456 DNAJC18Q9H819 358 aa27.08■■□□□ 1.93
VTI1B-201ENST00000216456 SAP30BPQ9UHR5 308 aaKnown RBP27.08■■□□□ 1.93
VTI1B-201ENST00000216456 FLT1P17948 1338 aa27.08■■□□□ 1.93
VTI1B-201ENST00000216456 COL2A1P02458 1487 aaPredicted RBP27.07■■□□□ 1.92
VTI1B-201ENST00000216456 IDH1O75874 414 aaKnown RBP27.07■■□□□ 1.92
VTI1B-201ENST00000216456 MAP4K4O95819 1239 aaPredicted RBP27.07■■□□□ 1.92
VTI1B-201ENST00000216456 OSBPP22059 807 aa27.07■■□□□ 1.92
VTI1B-201ENST00000216456 CYP7A1P22680 504 aa27.07■■□□□ 1.92
VTI1B-201ENST00000216456 ARHGEF6Q15052 776 aa27.07■■□□□ 1.92
VTI1B-201ENST00000216456 FASTKD5Q7L8L6 764 aaKnown RBP27.07■■□□□ 1.92
VTI1B-201ENST00000216456 PALD1Q9ULE6 856 aa27.07■■□□□ 1.92
VTI1B-201ENST00000216456 PTPRFP10586 1907 aa27.07■■□□□ 1.92
VTI1B-201ENST00000216456 FMNL1O95466 1100 aaPredicted RBP27.06■■□□□ 1.92
VTI1B-201ENST00000216456 BAG3O95817 575 aa27.06■■□□□ 1.92
VTI1B-201ENST00000216456 SPP2Q13103 211 aa27.06■■□□□ 1.92
VTI1B-201ENST00000216456 C20orf194Q5TEA3 1177 aa27.06■■□□□ 1.92
VTI1B-201ENST00000216456 CAP2P40123 477 aa27.05■■□□□ 1.92
VTI1B-201ENST00000216456 MAGEB6Q8N7X4 407 aa27.05■■□□□ 1.92
VTI1B-201ENST00000216456 RHPN1Q8TCX5 695 aa27.05■■□□□ 1.92
VTI1B-201ENST00000216456 SRRDQ9UH36 339 aa27.05■■□□□ 1.92
VTI1B-201ENST00000216456 CDK5RAP2Q96SN8 1893 aa27.04■■□□□ 1.92
VTI1B-201ENST00000216456 ZBTB40Q9NUA8 1239 aa27.04■■□□□ 1.92
VTI1B-201ENST00000216456 GABRQQ9UN88 632 aa27.04■■□□□ 1.92
VTI1B-201ENST00000216456 PRKCZQ05513 592 aa27.03■■□□□ 1.92
VTI1B-201ENST00000216456 MTFR1Q15390 333 aa27.03■■□□□ 1.92
VTI1B-201ENST00000216456 PI4KBQ9UBF8 816 aa27.03■■□□□ 1.92
VTI1B-201ENST00000216456 RCAN3Q9UKA8 241 aa27.03■■□□□ 1.92
VTI1B-201ENST00000216456 GDF11O95390 407 aa27.02■■□□□ 1.92
VTI1B-201ENST00000216456 HMGCS2P54868 508 aa27.02■■□□□ 1.92
VTI1B-201ENST00000216456 NBPF11Q86T75 865 aa27.02■■□□□ 1.92
VTI1B-201ENST00000216456 AGTPBP1Q9UPW5 1226 aa27.02■■□□□ 1.92
VTI1B-201ENST00000216456 ATAD5Q96QE3 1844 aa27.02■■□□□ 1.92
VTI1B-201ENST00000216456 MYPNQ86TC9 1320 aa27.01■■□□□ 1.91
VTI1B-201ENST00000216456 PLCG2P16885 1265 aa27.01■■□□□ 1.91
VTI1B-201ENST00000216456 PRPF38BQ5VTL8 546 aaKnown RBP27.01■■□□□ 1.91
VTI1B-201ENST00000216456 ERC1Q8IUD2 1116 aa27.01■■□□□ 1.91
VTI1B-201ENST00000216456 ZNF280CQ8ND82 737 aa27.01■■□□□ 1.91
VTI1B-201ENST00000216456 TMEM106CQ9BVX2 250 aa27.01■■□□□ 1.91
VTI1B-201ENST00000216456 HERC5Q9UII4 1024 aaKnown RBP27.01■■□□□ 1.91
VTI1B-201ENST00000216456 RBBP6Q7Z6E9 1792 aaKnown RBP27.01■■□□□ 1.91
VTI1B-201ENST00000216456 EDC3Q96F86 508 aaKnown RBP27■■□□□ 1.91
VTI1B-201ENST00000216456 USP17L5A8MUK1 530 aa26.99■■□□□ 1.91
VTI1B-201ENST00000216456 GNRH1P01148 92 aa26.99■■□□□ 1.91
VTI1B-201ENST00000216456 ANKRD13CQ8N6S4 541 aa26.99■■□□□ 1.91
VTI1B-201ENST00000216456 RAET1EQ8TD07 263 aa26.99■■□□□ 1.91
VTI1B-201ENST00000216456 SMCR8Q8TEV9 937 aaPredicted RBP26.99■■□□□ 1.91
VTI1B-201ENST00000216456 DHX36Q9H2U1 1008 aaKnown RBP26.99■■□□□ 1.91
VTI1B-201ENST00000216456 DDX19BQ9UMR2 479 aa26.99■■□□□ 1.91
VTI1B-201ENST00000216456 SLC45A1Q9Y2W3 748 aa26.99■■□□□ 1.91
VTI1B-201ENST00000216456 FOCADQ5VW36 1801 aa26.98■■□□□ 1.91
VTI1B-201ENST00000216456 PEX10O60683 326 aa26.98■■□□□ 1.91
VTI1B-201ENST00000216456 FCGRTP55899 365 aa26.98■■□□□ 1.91
VTI1B-201ENST00000216456 CRACR2BQ8N4Y2 399 aaPredicted RBP26.98■■□□□ 1.91
VTI1B-201ENST00000216456 MS4A1P11836 297 aa26.97■■□□□ 1.91
VTI1B-201ENST00000216456 PRMT2P55345 433 aa26.97■■□□□ 1.91
VTI1B-201ENST00000216456 EVX2Q03828 476 aa26.97■■□□□ 1.91
VTI1B-201ENST00000216456 MTMR2Q13614 643 aa26.97■■□□□ 1.91
VTI1B-201ENST00000216456 SLFNL1Q499Z3 407 aa26.97■■□□□ 1.91
VTI1B-201ENST00000216456 METTL16Q86W50 562 aaKnown RBP26.97■■□□□ 1.91
VTI1B-201ENST00000216456 RPAP2Q8IXW5 612 aaPredicted RBP26.97■■□□□ 1.91
VTI1B-201ENST00000216456 GRK4P32298 578 aa26.96■■□□□ 1.91
VTI1B-201ENST00000216456 DNAJC2Q99543 621 aaKnown RBP26.96■■□□□ 1.91
VTI1B-201ENST00000216456 LOC285556D6RIA3 1793 aa26.95■■□□□ 1.9
VTI1B-201ENST00000216456 HOXD10P28358 340 aa26.95■■□□□ 1.9
VTI1B-201ENST00000216456 USP5P45974 858 aa26.95■■□□□ 1.9
VTI1B-201ENST00000216456 MAP3K12Q12852 859 aa26.95■■□□□ 1.9
VTI1B-201ENST00000216456 HSP90AB4PQ58FF6 505 aa26.95■■□□□ 1.9
VTI1B-201ENST00000216456 FOXP4Q8IVH2 680 aaPredicted RBP26.95■■□□□ 1.9
VTI1B-201ENST00000216456 PROCA1Q8NCQ7 364 aaPredicted RBP26.95■■□□□ 1.9
VTI1B-201ENST00000216456 KIF1BPQ96EK5 621 aa26.95■■□□□ 1.9
VTI1B-201ENST00000216456 MGAMO43451 1857 aa26.95■■□□□ 1.9
VTI1B-201ENST00000216456 GOLIM4O00461 696 aa26.94■■□□□ 1.9
VTI1B-201ENST00000216456 CLASRPQ8N2M8 674 aaKnown RBP26.94■■□□□ 1.9
VTI1B-201ENST00000216456 SHISA4Q96DD7 197 aa26.94■■□□□ 1.9
VTI1B-201ENST00000216456 RIOK1Q9BRS2 568 aaKnown RBP26.94■■□□□ 1.9
VTI1B-201ENST00000216456 TRIM34Q9BYJ4 488 aa26.94■■□□□ 1.9
VTI1B-201ENST00000216456 ASCC2Q9H1I8 757 aaPredicted RBP26.94■■□□□ 1.9
VTI1B-201ENST00000216456 ZBTB21Q9ULJ3 1066 aa26.94■■□□□ 1.9
VTI1B-201ENST00000216456 CHGBP05060 677 aa26.93■■□□□ 1.9
VTI1B-201ENST00000216456 ELNP15502 786 aa26.93■■□□□ 1.9
VTI1B-201ENST00000216456 PDE6AP16499 860 aa26.93■■□□□ 1.9
VTI1B-201ENST00000216456 FLT3LGP49771 235 aa26.93■■□□□ 1.9
VTI1B-201ENST00000216456 SH3D19Q5HYK7 790 aa26.93■■□□□ 1.9
VTI1B-201ENST00000216456 TNPO2O14787 897 aaKnown RBP26.92■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms