RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Serpinb1cQ5SV42 375 aa13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Rps6kb1Q8BSK8 525 aa13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Ophn1Q99J31 802 aa13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 AticQ9CWJ9 592 aaKnown RBP13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 HnrnpcQ9Z204 313 aaKnown RBP13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Gm28043E0CXC2 719 aa13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 PhbP67778 272 aaKnown RBP13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Ice2Q3UZ18 988 aaKnown RBP13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Cabs1Q8C633 391 aa13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Zscan25B2RX31 543 aa13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Spata2Q8K004 515 aa13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 A0A1W2P7S8 802 aa13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Nucb1Q02819 459 aaKnown RBP13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Cdc5lQ6A068 802 aaKnown RBP13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Birc2Q62210 612 aa13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Enox2Q8R0Z2 598 aa13.23□□□□□ -0.29
Trim56-201ENSMUST00000054384 Mlh3A0A1Y7VMP7 1443 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 LdhaP06151 332 aaKnown RBP13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Jdp2P97875 163 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Gys2Q8VCB3 704 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 CltaO08585 235 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Fam83gQ5SWY7 812 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Swap70Q6A028 585 aaKnown RBP13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Slc7a6osQ7TPE5 306 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Pram1Q6BCL1 675 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 B4galnt4Q766D5 1034 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Rab11fip4Q8BQP8 635 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Slc26a7Q8R2Z3 656 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Atp6v1e2Q9D593 226 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Tbc1d4Q8BYJ6 1307 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Lrrc2Q8VDB8 371 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 GopcQ8BH60 463 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Nuf2Q99P69 463 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Tpcn1Q9EQJ0 817 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 MthfslL7N466 203 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Pa2g4P50580 394 aaKnown RBP13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Ccdc110Q3V125 848 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Cacna2d2Q6PHS9 1154 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 SdsQ8VBT2 327 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Ccnt1Q9QWV9 724 aaKnown RBP13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Irs4Q9Z0Y7 1216 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Cetn3O35648 167 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Rps6ka1P18653 724 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Card10P58660 1021 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Haus6Q6NV99 933 aaKnown RBP13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Klhl7Q8BUL5 586 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Efcc1Q9JJF6 558 aa13.22□□□□□ -0.29
Trim56-201ENSMUST00000054384 Scyl1Q9EQC5 806 aaKnown RBP13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Trim17Q7TPM3 477 aa13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Cep85Q8BMK0 761 aa13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Smc6Q924W5 1097 aa13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Ap1b1O35643 943 aaKnown RBP13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Cog7Q3UM29 770 aa13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Luc7l3Q5SUF2 432 aaKnown RBP13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Ankfy1Q810B6 1169 aa13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 4930548H24RikQ9D496 437 aa13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Atf7ipQ7TT18 1306 aa13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Mical3Q8CJ19 1993 aa13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Mindy4Q3UQI9 744 aa13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Rassf10Q8BL43 508 aa13.21□□□□□ -0.29
Trim56-201ENSMUST00000054384 Cd72P21855 354 aa13.21□□□□□ -0.3
Trim56-201ENSMUST00000054384 Rnf40Q3U319 1001 aa13.21□□□□□ -0.3
Trim56-201ENSMUST00000054384 C130026I21RikQ8C898 291 aa13.21□□□□□ -0.3
Trim56-201ENSMUST00000054384 Art2aP17981 287 aa13.21□□□□□ -0.3
Trim56-201ENSMUST00000054384 NelfbQ8C4Y3 580 aa13.21□□□□□ -0.3
Trim56-201ENSMUST00000054384 Trim60Q8VI40 466 aa13.21□□□□□ -0.3
Trim56-201ENSMUST00000054384 Acsl3Q9CZW4 720 aaKnown RBP13.21□□□□□ -0.3
Trim56-201ENSMUST00000054384 Krt222Q8CCX5 294 aa13.21□□□□□ -0.3
Trim56-201ENSMUST00000054384 Prim1P20664 417 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Gadd45bP22339 160 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Tut1Q8R3F9 869 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 TnksQ6PFX9 1320 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 ByslO54825 436 aaKnown RBP13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Ankrd6Q69ZU8 712 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 PicalmQ7M6Y3 660 aaKnown RBP13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Zfp202Q8C879 641 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Ddx41Q91VN6 622 aaKnown RBP13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Pcdhb5Q91XZ5 792 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Ribc1Q9D0B8 379 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 C1qbpO35658 278 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Ptgs1P22437 602 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Sparcl1P70663 650 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Lrrc36Q3V0M2 755 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Basp1Q91XV3 226 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Ccdc97Q9DBT3 340 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Naip5Q9R016 1403 aa13.2□□□□□ -0.3
Trim56-201ENSMUST00000054384 Ctnna1P26231 906 aaKnown RBP13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Snrpa1P57784 255 aaKnown RBP13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Lrp2bpQ9D4C6 346 aa13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Igf1rQ60751 1373 aa13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 PparaP23204 468 aa13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Clec11aO88200 328 aa13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Myo6Q64331 1265 aa13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Gpbp1Q6NXH3 473 aaKnown RBP13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Aldh1l2Q8K009 923 aa13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Bicc1Q99MQ1 977 aaKnown RBP13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Pola1P33609 1465 aa13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Fgd5Q80UZ0 1219 aa13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Suds3Q8BR65 328 aa13.19□□□□□ -0.3
Trim56-201ENSMUST00000054384 Serpinb13Q8CDC0 389 aa13.19□□□□□ -0.3
Retrieved 100 of 22,080 RNA–protein pairs in 88.2 ms