RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 KRTAP12-3P60328 96 aa0.99□□□□□ -2.25
VPS35-209ENST00000568642 LINC01546A6NGU7 62 aa0.98□□□□□ -2.25
VPS35-209ENST00000568642 CNFNQ9BYD5 112 aa0.98□□□□□ -2.25
VPS35-209ENST00000568642 NMES1Q9C002 83 aa0.98□□□□□ -2.25
VPS35-209ENST00000568642 PRO0255Q9UI72 69 aa0.98□□□□□ -2.25
VPS35-209ENST00000568642 RPS27P42677 84 aaKnown RBP0.97□□□□□ -2.25
VPS35-209ENST00000568642 TMEM167AQ8TBQ9 72 aa0.97□□□□□ -2.25
VPS35-209ENST00000568642 MRPL34Q9BQ48 92 aaKnown RBP0.97□□□□□ -2.25
VPS35-209ENST00000568642 SMIM27A0A1W2PRY6 76 aa0.96□□□□□ -2.26
VPS35-209ENST00000568642 DEFB1P60022 68 aa0.96□□□□□ -2.26
VPS35-209ENST00000568642 TOMM5Q8N4H5 51 aa0.96□□□□□ -2.26
VPS35-209ENST00000568642 RPL38P63173 70 aaKnown RBP0.95□□□□□ -2.26
VPS35-209ENST00000568642 KRTAP20-2Q3LI61 65 aa0.95□□□□□ -2.26
VPS35-209ENST00000568642 CDKN2A-AS1Q9UH64 79 aa0.95□□□□□ -2.26
VPS35-209ENST00000568642 A0A096LNI7 61 aa0.94□□□□□ -2.26
VPS35-209ENST00000568642 RPL39P5Q59GN2 51 aa0.94□□□□□ -2.26
VPS35-209ENST00000568642 SPRR1AP35321 89 aa0.93□□□□□ -2.26
VPS35-209ENST00000568642 PRCDQ00LT1 54 aa0.93□□□□□ -2.26
VPS35-209ENST00000568642 KLK9Q2XQG4 91 aa0.92□□□□□ -2.26
VPS35-209ENST00000568642 TTTY10Q9BZA0 68 aa0.92□□□□□ -2.26
VPS35-209ENST00000568642 ABRACLQ9P1F3 81 aa0.92□□□□□ -2.26
VPS35-209ENST00000568642 MT1BP07438 61 aa0.91□□□□□ -2.26
VPS35-209ENST00000568642 PLNP26678 52 aa0.91□□□□□ -2.26
VPS35-209ENST00000568642 Q8IZM0 81 aa0.9□□□□□ -2.27
VPS35-209ENST00000568642 C9orf92A6NGG3 77 aa0.89□□□□□ -2.27
VPS35-209ENST00000568642 A8MTW9 85 aa0.89□□□□□ -2.27
VPS35-209ENST00000568642 LINC00158P58513 81 aa0.89□□□□□ -2.27
VPS35-209ENST00000568642 SERF2P84101 59 aa0.89□□□□□ -2.27
VPS35-209ENST00000568642 PIGYQ3MUY2 71 aa0.88□□□□□ -2.27
VPS35-209ENST00000568642 H1FX-AS1Q4G0G2 97 aa0.88□□□□□ -2.27
VPS35-209ENST00000568642 SYNE1Q8NF91 8797 aaKnown RBP0.87□□□□□ -2.27
VPS35-209ENST00000568642 PHGR1C9JFL3 82 aa0.87□□□□□ -2.27
VPS35-209ENST00000568642 K7EIM0 57 aa0.87□□□□□ -2.27
VPS35-209ENST00000568642 SPINK4O60575 86 aa0.87□□□□□ -2.27
VPS35-209ENST00000568642 SPRR1BP22528 89 aa0.87□□□□□ -2.27
VPS35-209ENST00000568642 SPINK1P00995 79 aa0.84□□□□□ -2.27
VPS35-209ENST00000568642 CLPSL2Q6UWE3 100 aa0.84□□□□□ -2.27
VPS35-209ENST00000568642 H0YGX0 51 aa0.83□□□□□ -2.28
VPS35-209ENST00000568642 DEFB105AQ8NG35 78 aa0.83□□□□□ -2.28
VPS35-209ENST00000568642 LINC00308Q8TCZ7 52 aa0.83□□□□□ -2.28
VPS35-209ENST00000568642 SNRPGP62308 76 aaKnown RBP0.82□□□□□ -2.28
VPS35-209ENST00000568642 WT1-ASQ06250 92 aa0.82□□□□□ -2.28
VPS35-209ENST00000568642 KRTAP19-8Q3LI54 63 aa0.82□□□□□ -2.28
VPS35-209ENST00000568642 WFDC13Q8IUB5 93 aa0.82□□□□□ -2.28
VPS35-209ENST00000568642 KRTAP19-3Q7Z4W3 81 aa0.8□□□□□ -2.28
VPS35-209ENST00000568642 IAPPP10997 89 aa0.79□□□□□ -2.28
VPS35-209ENST00000568642 RPS29P62273 56 aaKnown RBP0.79□□□□□ -2.28
VPS35-209ENST00000568642 LINC01590Q5TEZ4 76 aa0.79□□□□□ -2.28
VPS35-209ENST00000568642 TMEM167BQ9NRX6 74 aa0.78□□□□□ -2.28
VPS35-209ENST00000568642 C6orf48Q9UBA6 75 aa0.76□□□□□ -2.29
VPS35-209ENST00000568642 SPRR2GQ9BYE4 73 aa0.75□□□□□ -2.29
VPS35-209ENST00000568642 SMIM2Q9BVW6 85 aa0.74□□□□□ -2.29
VPS35-209ENST00000568642 MT1XP80297 61 aa0.73□□□□□ -2.29
VPS35-209ENST00000568642 ARHGAP5-AS1Q96IT6 56 aa0.73□□□□□ -2.29
VPS35-209ENST00000568642 NDUFA1O15239 70 aa0.71□□□□□ -2.3
VPS35-209ENST00000568642 MT1GP13640 62 aa0.71□□□□□ -2.3
VPS35-209ENST00000568642 MT1MQ8N339 61 aa0.7□□□□□ -2.3
VPS35-209ENST00000568642 S4R3F8 94 aa0.7□□□□□ -2.3
VPS35-209ENST00000568642 PRLHP81277 87 aa0.69□□□□□ -2.3
VPS35-209ENST00000568642 MT1EP04732 61 aa0.68□□□□□ -2.3
VPS35-209ENST00000568642 MMP24-AS1A0A0U1RRL7 71 aa0.67□□□□□ -2.3
VPS35-209ENST00000568642 IGLV5-48A0A075B6I7 105 aa0.66□□□□□ -2.3
VPS35-209ENST00000568642 KRTAP19-7Q3SYF9 63 aa0.66□□□□□ -2.3
VPS35-209ENST00000568642 KRTAP21-1Q3LI58 79 aa0.65□□□□□ -2.31
VPS35-209ENST00000568642 PRM1P04553 51 aa0.62□□□□□ -2.31
VPS35-209ENST00000568642 POLR2KP53803 58 aaKnown RBP0.62□□□□□ -2.31
VPS35-209ENST00000568642 RPL39P62891 51 aaKnown RBP0.59□□□□□ -2.31
VPS35-209ENST00000568642 KRTAP6-2Q3LI66 62 aa0.59□□□□□ -2.31
VPS35-209ENST00000568642 RPL39LQ96EH5 51 aaKnown RBP0.57□□□□□ -2.32
VPS35-209ENST00000568642 MT1LQ93083 61 aa0.56□□□□□ -2.32
VPS35-209ENST00000568642 M0QY20 66 aa0.52□□□□□ -2.33
VPS35-209ENST00000568642 KRTAP6-1Q3LI64 71 aa0.51□□□□□ -2.33
VPS35-209ENST00000568642 KRTAP19-5Q3LI72 72 aa0.51□□□□□ -2.33
VPS35-209ENST00000568642 M0QZ58 72 aa0.49□□□□□ -2.33
VPS35-209ENST00000568642 TOMM7Q9P0U1 55 aa0.48□□□□□ -2.33
VPS35-209ENST00000568642 MT1AP04731 61 aa0.47□□□□□ -2.33
VPS35-209ENST00000568642 MUC16Q8WXI7 14507 aa0.46□□□□□ -2.34
VPS35-209ENST00000568642 TNP1P09430 55 aa0.44□□□□□ -2.34
Retrieved 78 of 20,778 RNA–protein pairs in 1073.3 ms