RNA–Protein interactions for RNA: ENST00000510884.5

NUP54-210, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 441 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-210ENST00000510884 GPR98Q8WXG9 6306 aa2.16□□□□□ -2.06
NUP54-210ENST00000510884 A0A096LNI7 61 aa2.16□□□□□ -2.06
NUP54-210ENST00000510884 PKD1P98161 4303 aa2.16□□□□□ -2.06
NUP54-210ENST00000510884 A0A096LPF7 62 aa2.15□□□□□ -2.07
NUP54-210ENST00000510884 KRTAP4-1Q9BYQ7 146 aa2.15□□□□□ -2.07
NUP54-210ENST00000510884 SPART-AS1P0CW21 52 aa2.13□□□□□ -2.07
NUP54-210ENST00000510884 DNAH6Q9C0G6 4158 aa2.13□□□□□ -2.07
NUP54-210ENST00000510884 FCGBPQ9Y6R7 5405 aaPredicted RBP2.13□□□□□ -2.07
NUP54-210ENST00000510884 KRTAP6-3Q3LI67 103 aa2.12□□□□□ -2.07
NUP54-210ENST00000510884 LRP1BQ9NZR2 4599 aa2.12□□□□□ -2.07
NUP54-210ENST00000510884 PKHD1L1Q86WI1 4243 aa2.1□□□□□ -2.07
NUP54-210ENST00000510884 MACF1Q9UPN3 7388 aaKnown RBP2.1□□□□□ -2.07
NUP54-210ENST00000510884 DNAH5Q8TE73 4624 aa2.09□□□□□ -2.07
NUP54-210ENST00000510884 DNAH17Q9UFH2 4485 aa2.08□□□□□ -2.08
NUP54-210ENST00000510884 LRP1Q07954 4544 aaKnown RBP2.07□□□□□ -2.08
NUP54-210ENST00000510884 VPS13BQ7Z7G8 4022 aa2.07□□□□□ -2.08
NUP54-210ENST00000510884 KRTAP20-1Q3LI63 56 aa2.07□□□□□ -2.08
NUP54-210ENST00000510884 FAT3Q8TDW7 4589 aa2.03□□□□□ -2.08
NUP54-210ENST00000510884 DEFB135Q30KP9 77 aa2.03□□□□□ -2.08
NUP54-210ENST00000510884 USH2AO75445 5202 aa2.02□□□□□ -2.09
NUP54-210ENST00000510884 DEFB4AO15263 64 aa2.02□□□□□ -2.09
NUP54-210ENST00000510884 RPS29P62273 56 aaKnown RBP2.02□□□□□ -2.09
NUP54-210ENST00000510884 TNP1P09430 55 aa2.01□□□□□ -2.09
NUP54-210ENST00000510884 HTN3P15516 51 aa1.99□□□□□ -2.09
NUP54-210ENST00000510884 TNXBP22105 4242 aa1.97□□□□□ -2.09
NUP54-210ENST00000510884 C9orf92A6NGG3 77 aa1.96□□□□□ -2.1
NUP54-210ENST00000510884 KMT2DO14686 5537 aa1.93□□□□□ -2.1
NUP54-210ENST00000510884 SMR3BP02814 79 aaPredicted RBP1.89□□□□□ -2.11
NUP54-210ENST00000510884 LPAP08519 4548 aa1.89□□□□□ -2.11
NUP54-210ENST00000510884 MT1HL1P0DM35 61 aa1.88□□□□□ -2.11
NUP54-210ENST00000510884 MUC12Q9UKN1 5478 aa1.87□□□□□ -2.11
NUP54-210ENST00000510884 KRTAP2-3P0C7H8 128 aa1.86□□□□□ -2.11
NUP54-210ENST00000510884 KRTAP2-4Q9BYR9 128 aa1.86□□□□□ -2.11
NUP54-210ENST00000510884 AHNAK2Q8IVF2 5795 aa1.83□□□□□ -2.12
NUP54-210ENST00000510884 M0R2T5 61 aa1.8□□□□□ -2.12
NUP54-210ENST00000510884 MDN1Q9NU22 5596 aa1.8□□□□□ -2.12
NUP54-210ENST00000510884 KRTAP10-4P60372 401 aaPredicted RBP1.79□□□□□ -2.12
NUP54-210ENST00000510884 DNAH8Q96JB1 4490 aa1.79□□□□□ -2.12
NUP54-210ENST00000510884 KRTAP2-1Q9BYU5 128 aa1.77□□□□□ -2.13
NUP54-210ENST00000510884 DSTQ03001 7570 aaKnown RBP1.75□□□□□ -2.13
NUP54-210ENST00000510884 KRTAP8-1Q8IUC2 63 aa1.71□□□□□ -2.14
NUP54-210ENST00000510884 MUC17Q685J3 4493 aa1.7□□□□□ -2.14
NUP54-210ENST00000510884 KRTAP5-10Q6L8G5 202 aa1.68□□□□□ -2.14
NUP54-210ENST00000510884 AHNAKQ09666 5890 aaKnown RBP1.66□□□□□ -2.14
NUP54-210ENST00000510884 MT1HP80294 61 aa1.65□□□□□ -2.15
NUP54-210ENST00000510884 KRTAP19-6Q3LI70 58 aa1.63□□□□□ -2.15
NUP54-210ENST00000510884 MUC5BQ9HC84 5762 aaPredicted RBP1.61□□□□□ -2.15
NUP54-210ENST00000510884 KRTAP19-2Q3LHN2 52 aa1.57□□□□□ -2.16
NUP54-210ENST00000510884 MUC5ACP98088 5654 aa1.55□□□□□ -2.16
NUP54-210ENST00000510884 SPRR2EP22531 72 aa1.5□□□□□ -2.17
NUP54-210ENST00000510884 SPRR2BP35325 72 aa1.5□□□□□ -2.17
NUP54-210ENST00000510884 SPRR2AP35326 72 aa1.5□□□□□ -2.17
NUP54-210ENST00000510884 FLGP20930 4061 aaPredicted RBP1.49□□□□□ -2.17
NUP54-210ENST00000510884 SPRR2DP22532 72 aa1.47□□□□□ -2.17
NUP54-210ENST00000510884 PRM1P04553 51 aa1.44□□□□□ -2.18
NUP54-210ENST00000510884 KRTAP19-5Q3LI72 72 aa1.4□□□□□ -2.19
NUP54-210ENST00000510884 SPRR2FQ96RM1 72 aa1.39□□□□□ -2.19
NUP54-210ENST00000510884 MT2AP02795 61 aa1.38□□□□□ -2.19
NUP54-210ENST00000510884 MT1AP04731 61 aa1.38□□□□□ -2.19
NUP54-210ENST00000510884 MT1FP04733 61 aa1.36□□□□□ -2.19
NUP54-210ENST00000510884 SPRR2GQ9BYE4 73 aa1.35□□□□□ -2.19
NUP54-210ENST00000510884 MT4P47944 62 aa1.32□□□□□ -2.2
NUP54-210ENST00000510884 MUC16Q8WXI7 14507 aa1.27□□□□□ -2.21
NUP54-210ENST00000510884 MT1EP04732 61 aa1.24□□□□□ -2.21
NUP54-210ENST00000510884 MT1BP07438 61 aa1.22□□□□□ -2.21
NUP54-210ENST00000510884 KRTAP19-8Q3LI54 63 aa1.2□□□□□ -2.22
NUP54-210ENST00000510884 KRTAP6-2Q3LI66 62 aa1.2□□□□□ -2.22
NUP54-210ENST00000510884 MT1LQ93083 61 aa1.2□□□□□ -2.22
NUP54-210ENST00000510884 KRTAP19-3Q7Z4W3 81 aa1.18□□□□□ -2.22
NUP54-210ENST00000510884 SYNE1Q8NF91 8797 aaKnown RBP1.16□□□□□ -2.22
NUP54-210ENST00000510884 MT1XP80297 61 aa1.15□□□□□ -2.23
NUP54-210ENST00000510884 KRTAP20-2Q3LI61 65 aa1.12□□□□□ -2.23
NUP54-210ENST00000510884 KRTAP21-1Q3LI58 79 aa1.06□□□□□ -2.24
NUP54-210ENST00000510884 KRTAP19-7Q3SYF9 63 aa1.02□□□□□ -2.25
NUP54-210ENST00000510884 PHGR1C9JFL3 82 aa0.98□□□□□ -2.25
NUP54-210ENST00000510884 MT1MQ8N339 61 aa0.97□□□□□ -2.25
NUP54-210ENST00000510884 MT1GP13640 62 aa0.96□□□□□ -2.26
NUP54-210ENST00000510884 KRTAP6-1Q3LI64 71 aa0.84□□□□□ -2.27
Retrieved 78 of 20,778 RNA–protein pairs in 131.3 ms