RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 KRTAP10-10P60014 251 aa2.26□□□□□ -2.05
VPS13A-207ENST00000419472 A0A0D9SG42 100 aa2.26□□□□□ -2.05
VPS13A-207ENST00000419472 RPS29P62273 56 aaKnown RBP2.26□□□□□ -2.05
VPS13A-207ENST00000419472 KRTAP6-3Q3LI67 103 aa2.23□□□□□ -2.05
VPS13A-207ENST00000419472 AHNAKQ09666 5890 aaKnown RBP2.23□□□□□ -2.05
VPS13A-207ENST00000419472 KRTAP20-1Q3LI63 56 aa2.23□□□□□ -2.05
VPS13A-207ENST00000419472 SSPOA2VEC9 5147 aa2.22□□□□□ -2.05
VPS13A-207ENST00000419472 KRTAP5-9P26371 169 aa2.19□□□□□ -2.06
VPS13A-207ENST00000419472 MACF1Q9UPN3 7388 aaKnown RBP2.19□□□□□ -2.06
VPS13A-207ENST00000419472 KRTAP9-6A8MVA2 160 aa2.15□□□□□ -2.07
VPS13A-207ENST00000419472 MUC17Q685J3 4493 aa2.13□□□□□ -2.07
VPS13A-207ENST00000419472 PP632Q6XCG6 107 aa2.11□□□□□ -2.07
VPS13A-207ENST00000419472 M0QZ58 72 aa2.1□□□□□ -2.07
VPS13A-207ENST00000419472 KMT2DO14686 5537 aa2.09□□□□□ -2.07
VPS13A-207ENST00000419472 FCGBPQ9Y6R7 5405 aaPredicted RBP2.07□□□□□ -2.08
VPS13A-207ENST00000419472 USH2AO75445 5202 aa2.05□□□□□ -2.08
VPS13A-207ENST00000419472 KRTAP4-1Q9BYQ7 146 aa2.04□□□□□ -2.08
VPS13A-207ENST00000419472 MUC12Q9UKN1 5478 aa2.01□□□□□ -2.09
VPS13A-207ENST00000419472 KRTAP19-2Q3LHN2 52 aa2□□□□□ -2.09
VPS13A-207ENST00000419472 KRTAP12-3P60328 96 aa1.98□□□□□ -2.09
VPS13A-207ENST00000419472 MT1HP80294 61 aa1.98□□□□□ -2.09
VPS13A-207ENST00000419472 FLGP20930 4061 aaPredicted RBP1.98□□□□□ -2.09
VPS13A-207ENST00000419472 KRTAP2-3P0C7H8 128 aa1.96□□□□□ -2.1
VPS13A-207ENST00000419472 KRTAP5-11Q6L8G4 156 aa1.96□□□□□ -2.1
VPS13A-207ENST00000419472 KRTAP2-4Q9BYR9 128 aa1.96□□□□□ -2.1
VPS13A-207ENST00000419472 AHNAK2Q8IVF2 5795 aa1.95□□□□□ -2.1
VPS13A-207ENST00000419472 KRTAP5-4Q6L8H1 288 aa1.94□□□□□ -2.1
VPS13A-207ENST00000419472 M0R2T5 61 aa1.93□□□□□ -2.1
VPS13A-207ENST00000419472 DSTQ03001 7570 aaKnown RBP1.93□□□□□ -2.1
VPS13A-207ENST00000419472 KRTAP12-4P60329 112 aa1.92□□□□□ -2.1
VPS13A-207ENST00000419472 LCE3AQ5TA76 89 aa1.87□□□□□ -2.11
VPS13A-207ENST00000419472 TNP1P09430 55 aa1.86□□□□□ -2.11
VPS13A-207ENST00000419472 KRTAP2-1Q9BYU5 128 aa1.86□□□□□ -2.11
VPS13A-207ENST00000419472 MT2AP02795 61 aa1.86□□□□□ -2.11
VPS13A-207ENST00000419472 KRTAP5-1Q6L8H4 278 aa1.84□□□□□ -2.12
VPS13A-207ENST00000419472 MDN1Q9NU22 5596 aa1.83□□□□□ -2.12
VPS13A-207ENST00000419472 MT1FP04733 61 aa1.82□□□□□ -2.12
VPS13A-207ENST00000419472 KRTAP4-4Q9BYR3 166 aa1.81□□□□□ -2.12
VPS13A-207ENST00000419472 KRTAP19-6Q3LI70 58 aa1.78□□□□□ -2.12
VPS13A-207ENST00000419472 KRTAP5-7Q6L8G8 165 aa1.75□□□□□ -2.13
VPS13A-207ENST00000419472 SPRR2GQ9BYE4 73 aa1.75□□□□□ -2.13
VPS13A-207ENST00000419472 KRTAP5-8O75690 187 aa1.74□□□□□ -2.13
VPS13A-207ENST00000419472 KRTAP19-8Q3LI54 63 aa1.74□□□□□ -2.13
VPS13A-207ENST00000419472 KRTAP5-10Q6L8G5 202 aa1.74□□□□□ -2.13
VPS13A-207ENST00000419472 KRTAP5-5Q701N2 237 aaPredicted RBP1.72□□□□□ -2.13
VPS13A-207ENST00000419472 KRTAP8-1Q8IUC2 63 aa1.7□□□□□ -2.14
VPS13A-207ENST00000419472 MT1BP07438 61 aa1.69□□□□□ -2.14
VPS13A-207ENST00000419472 KRTAP5-2Q701N4 177 aa1.69□□□□□ -2.14
VPS13A-207ENST00000419472 MT1XP80297 61 aa1.65□□□□□ -2.14
VPS13A-207ENST00000419472 SPRR2EP22531 72 aa1.63□□□□□ -2.15
VPS13A-207ENST00000419472 SPRR2BP35325 72 aa1.63□□□□□ -2.15
VPS13A-207ENST00000419472 SPRR2AP35326 72 aa1.63□□□□□ -2.15
VPS13A-207ENST00000419472 SPRR2DP22532 72 aa1.59□□□□□ -2.16
VPS13A-207ENST00000419472 OBSCNQ5VST9 7968 aa1.56□□□□□ -2.16
VPS13A-207ENST00000419472 KRTAP4-3Q9BYR4 195 aa1.56□□□□□ -2.16
VPS13A-207ENST00000419472 MUC5ACP98088 5654 aa1.55□□□□□ -2.16
VPS13A-207ENST00000419472 KRTAP19-5Q3LI72 72 aa1.54□□□□□ -2.16
VPS13A-207ENST00000419472 SPRR2FQ96RM1 72 aa1.52□□□□□ -2.17
VPS13A-207ENST00000419472 LCE1CQ5T751 118 aa1.49□□□□□ -2.17
VPS13A-207ENST00000419472 LCE1BQ5T7P3 118 aa1.49□□□□□ -2.17
VPS13A-207ENST00000419472 KRTAP19-7Q3SYF9 63 aa1.48□□□□□ -2.17
VPS13A-207ENST00000419472 MT4P47944 62 aa1.47□□□□□ -2.17
VPS13A-207ENST00000419472 SYNE1Q8NF91 8797 aaKnown RBP1.45□□□□□ -2.18
VPS13A-207ENST00000419472 MT1EP04732 61 aa1.43□□□□□ -2.18
VPS13A-207ENST00000419472 KRTAP19-3Q7Z4W3 81 aa1.42□□□□□ -2.18
VPS13A-207ENST00000419472 MT1LQ93083 61 aa1.42□□□□□ -2.18
VPS13A-207ENST00000419472 MT1GP13640 62 aa1.4□□□□□ -2.19
VPS13A-207ENST00000419472 MUC19Q7Z5P9 8384 aa1.36□□□□□ -2.19
VPS13A-207ENST00000419472 PRM1P04553 51 aa1.36□□□□□ -2.19
VPS13A-207ENST00000419472 MT1MQ8N339 61 aa1.35□□□□□ -2.19
VPS13A-207ENST00000419472 MT1AP04731 61 aa1.3□□□□□ -2.2
VPS13A-207ENST00000419472 KRTAP6-1Q3LI64 71 aa1.23□□□□□ -2.21
VPS13A-207ENST00000419472 KRTAP6-2Q3LI66 62 aa1.21□□□□□ -2.22
VPS13A-207ENST00000419472 KRTAP20-2Q3LI61 65 aa1.2□□□□□ -2.22
VPS13A-207ENST00000419472 PHGR1C9JFL3 82 aa1.09□□□□□ -2.24
VPS13A-207ENST00000419472 KRTAP21-2Q3LI59 83 aa1.07□□□□□ -2.24
VPS13A-207ENST00000419472 KRTAP21-1Q3LI58 79 aa0.93□□□□□ -2.26
VPS13A-207ENST00000419472 MUC16Q8WXI7 14507 aa0.63□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 12.4 ms