RNA–Protein interactions for RNA: ENST00000299957.10

CASC4-201, Transcript of cancer susceptibility 4, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CASC4, Length 3,962 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-201ENST00000299957 MUC12Q9UKN1 5478 aa4.48□□□□□ -1.69
CASC4-201ENST00000299957 KRTAP9-6A8MVA2 160 aa4.46□□□□□ -1.7
CASC4-201ENST00000299957 KRTAP12-4P60329 112 aa4.45□□□□□ -1.7
CASC4-201ENST00000299957 MT1LQ93083 61 aa4.44□□□□□ -1.7
CASC4-201ENST00000299957 KRTAP19-7Q3SYF9 63 aa4.41□□□□□ -1.7
CASC4-201ENST00000299957 MT1EP04732 61 aa4.4□□□□□ -1.7
CASC4-201ENST00000299957 LCE2AQ5TA79 106 aaPredicted RBP4.29□□□□□ -1.72
CASC4-201ENST00000299957 KRTAP4-9Q9BYQ8 210 aa4.25□□□□□ -1.73
CASC4-201ENST00000299957 KRTAP19-3Q7Z4W3 81 aa4.22□□□□□ -1.73
CASC4-201ENST00000299957 SSPOA2VEC9 5147 aa4.22□□□□□ -1.73
CASC4-201ENST00000299957 MT1MQ8N339 61 aa4.19□□□□□ -1.74
CASC4-201ENST00000299957 KRTAP2-3P0C7H8 128 aa4.12□□□□□ -1.75
CASC4-201ENST00000299957 KRTAP2-4Q9BYR9 128 aa4.12□□□□□ -1.75
CASC4-201ENST00000299957 KRTAP2-1Q9BYU5 128 aa4.12□□□□□ -1.75
CASC4-201ENST00000299957 SPRR2EP22531 72 aa4.11□□□□□ -1.75
CASC4-201ENST00000299957 SPRR2BP35325 72 aa4.11□□□□□ -1.75
CASC4-201ENST00000299957 SPRR2AP35326 72 aa4.11□□□□□ -1.75
CASC4-201ENST00000299957 LCE3DQ9BYE3 92 aa4.08□□□□□ -1.76
CASC4-201ENST00000299957 KRTAP19-4Q3LI73 84 aa4.07□□□□□ -1.76
CASC4-201ENST00000299957 MACF1Q9UPN3 7388 aaKnown RBP4.07□□□□□ -1.76
CASC4-201ENST00000299957 KRTAP19-6Q3LI70 58 aa4.06□□□□□ -1.76
CASC4-201ENST00000299957 LCE2DQ5TA82 110 aaPredicted RBP4□□□□□ -1.77
CASC4-201ENST00000299957 LCE3EQ5T5B0 92 aa3.98□□□□□ -1.77
CASC4-201ENST00000299957 PRM1P04553 51 aa3.92□□□□□ -1.78
CASC4-201ENST00000299957 SPRR2DP22532 72 aa3.91□□□□□ -1.78
CASC4-201ENST00000299957 MDN1Q9NU22 5596 aa3.88□□□□□ -1.79
CASC4-201ENST00000299957 KRTAP6-1Q3LI64 71 aa3.87□□□□□ -1.79
CASC4-201ENST00000299957 KRTAP9-7A8MTY7 169 aa3.79□□□□□ -1.8
CASC4-201ENST00000299957 LCE5AQ5TCM9 118 aa3.78□□□□□ -1.8
CASC4-201ENST00000299957 KRTAP9-2Q9BYQ4 174 aa3.78□□□□□ -1.81
CASC4-201ENST00000299957 MT1AP04731 61 aa3.72□□□□□ -1.81
CASC4-201ENST00000299957 MT4P47944 62 aa3.71□□□□□ -1.82
CASC4-201ENST00000299957 LCE1AQ5T7P2 110 aa3.64□□□□□ -1.83
CASC4-201ENST00000299957 MT3P25713 68 aa3.62□□□□□ -1.83
CASC4-201ENST00000299957 KRTAP6-2Q3LI66 62 aa3.62□□□□□ -1.83
CASC4-201ENST00000299957 MUC19Q7Z5P9 8384 aa3.62□□□□□ -1.83
CASC4-201ENST00000299957 LCE1DQ5T752 114 aa3.52□□□□□ -1.85
CASC4-201ENST00000299957 LCE1BQ5T7P3 118 aa3.5□□□□□ -1.85
CASC4-201ENST00000299957 KRTAP9-6A0A140TA67 174 aa3.49□□□□□ -1.85
CASC4-201ENST00000299957 KRTAP9-4Q9BYQ2 154 aa3.45□□□□□ -1.86
CASC4-201ENST00000299957 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.3□□□□□ -1.88
CASC4-201ENST00000299957 KRTAP5-5Q701N2 237 aaPredicted RBP3.29□□□□□ -1.88
CASC4-201ENST00000299957 KRTAP4-6Q9BYQ5 205 aa3.24□□□□□ -1.89
CASC4-201ENST00000299957 KRTAP6-3Q3LI67 103 aa3.2□□□□□ -1.9
CASC4-201ENST00000299957 KRTAP2-2Q9BYT5 123 aa3.19□□□□□ -1.9
CASC4-201ENST00000299957 KRTAP5-9P26371 169 aa3.19□□□□□ -1.9
CASC4-201ENST00000299957 NEBP20929 6669 aa3.16□□□□□ -1.9
CASC4-201ENST00000299957 MUC5ACP98088 5654 aa3.13□□□□□ -1.91
CASC4-201ENST00000299957 KRTAP4-11Q9BYQ6 195 aa3.04□□□□□ -1.92
CASC4-201ENST00000299957 HMCN1Q96RW7 5635 aa2.98□□□□□ -1.93
CASC4-201ENST00000299957 KRTAP20-2Q3LI61 65 aa2.94□□□□□ -1.94
CASC4-201ENST00000299957 LCE4AQ5TA78 99 aa2.91□□□□□ -1.94
CASC4-201ENST00000299957 GPR98Q8WXG9 6306 aa2.91□□□□□ -1.94
CASC4-201ENST00000299957 KRTAP20-1Q3LI63 56 aa2.87□□□□□ -1.95
CASC4-201ENST00000299957 LCE1EQ5T753 118 aa2.87□□□□□ -1.95
CASC4-201ENST00000299957 KRTAP4-4Q9BYR3 166 aa2.83□□□□□ -1.96
CASC4-201ENST00000299957 KRTAP4-12Q9BQ66 201 aa2.68□□□□□ -1.98
CASC4-201ENST00000299957 KRTAP4-2Q9BYR5 136 aa2.68□□□□□ -1.98
CASC4-201ENST00000299957 KRTAP5-4Q6L8H1 288 aa2.65□□□□□ -1.99
CASC4-201ENST00000299957 LCE1CQ5T751 118 aa2.64□□□□□ -1.99
CASC4-201ENST00000299957 LCE1FQ5T754 118 aa2.64□□□□□ -1.99
CASC4-201ENST00000299957 AHNAK2Q8IVF2 5795 aa2.51□□□□□ -2.01
CASC4-201ENST00000299957 MUC5BQ9HC84 5762 aaPredicted RBP2.51□□□□□ -2.01
CASC4-201ENST00000299957 KRTAP5-10Q6L8G5 202 aa2.47□□□□□ -2.01
CASC4-201ENST00000299957 KRTAP5-2Q701N4 177 aa2.41□□□□□ -2.02
CASC4-201ENST00000299957 KRTAP5-3Q6L8H2 238 aa2.41□□□□□ -2.02
CASC4-201ENST00000299957 KRTAP9-9Q9BYP9 154 aa2.34□□□□□ -2.04
CASC4-201ENST00000299957 KRTAP5-8O75690 187 aa2.25□□□□□ -2.05
CASC4-201ENST00000299957 KRTAP5-1Q6L8H4 278 aa2.2□□□□□ -2.06
CASC4-201ENST00000299957 KRTAP21-2Q3LI59 83 aa2.18□□□□□ -2.06
CASC4-201ENST00000299957 AHNAKQ09666 5890 aaKnown RBP2.09□□□□□ -2.07
CASC4-201ENST00000299957 KRTAP5-7Q6L8G8 165 aa2.06□□□□□ -2.08
CASC4-201ENST00000299957 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.99□□□□□ -2.09
CASC4-201ENST00000299957 KRTAP21-1Q3LI58 79 aa1.93□□□□□ -2.1
CASC4-201ENST00000299957 KRTAP5-11Q6L8G4 156 aa1.93□□□□□ -2.1
CASC4-201ENST00000299957 PHGR1C9JFL3 82 aa1.69□□□□□ -2.14
CASC4-201ENST00000299957 MUC16Q8WXI7 14507 aa1.16□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 68 ms