RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 KRTAP2-3P0C7H8 128 aa5.09□□□□□ -1.6
SH3RF1-201ENST00000284637 KRTAP2-4Q9BYR9 128 aa5.09□□□□□ -1.6
SH3RF1-201ENST00000284637 KRTAP2-1Q9BYU5 128 aa5.09□□□□□ -1.6
SH3RF1-201ENST00000284637 MT1MQ8N339 61 aa5.08□□□□□ -1.6
SH3RF1-201ENST00000284637 KRTAP4-3Q9BYR4 195 aa5.07□□□□□ -1.6
SH3RF1-201ENST00000284637 FSIP2Q5CZC0 6907 aa5.05□□□□□ -1.6
SH3RF1-201ENST00000284637 MT3P25713 68 aa4.93□□□□□ -1.62
SH3RF1-201ENST00000284637 KRTAP19-7Q3SYF9 63 aa4.92□□□□□ -1.62
SH3RF1-201ENST00000284637 LCE2DQ5TA82 110 aaPredicted RBP4.91□□□□□ -1.62
SH3RF1-201ENST00000284637 HMCN2Q8NDA2 5059 aa4.9□□□□□ -1.62
SH3RF1-201ENST00000284637 FAT4Q6V0I7 4981 aa4.9□□□□□ -1.63
SH3RF1-201ENST00000284637 RNF213Q63HN8 5207 aa4.88□□□□□ -1.63
SH3RF1-201ENST00000284637 KRTAP19-6Q3LI70 58 aa4.87□□□□□ -1.63
SH3RF1-201ENST00000284637 KRTAP4-9Q9BYQ8 210 aa4.84□□□□□ -1.63
SH3RF1-201ENST00000284637 MUC2Q02817 5179 aa4.83□□□□□ -1.64
SH3RF1-201ENST00000284637 MT4P47944 62 aa4.82□□□□□ -1.64
SH3RF1-201ENST00000284637 OBSCNQ5VST9 7968 aa4.77□□□□□ -1.65
SH3RF1-201ENST00000284637 KRTAP9-6A8MVA2 160 aa4.77□□□□□ -1.65
SH3RF1-201ENST00000284637 LCE1BQ5T7P3 118 aa4.74□□□□□ -1.65
SH3RF1-201ENST00000284637 LCE1DQ5T752 114 aa4.72□□□□□ -1.65
SH3RF1-201ENST00000284637 MT1AP04731 61 aa4.71□□□□□ -1.66
SH3RF1-201ENST00000284637 SYNE2Q8WXH0 6885 aaKnown RBP4.69□□□□□ -1.66
SH3RF1-201ENST00000284637 LCE2AQ5TA79 106 aaPredicted RBP4.64□□□□□ -1.67
SH3RF1-201ENST00000284637 KRTAP9-2Q9BYQ4 174 aa4.57□□□□□ -1.68
SH3RF1-201ENST00000284637 FCGBPQ9Y6R7 5405 aaPredicted RBP4.53□□□□□ -1.68
SH3RF1-201ENST00000284637 KRTAP6-1Q3LI64 71 aa4.51□□□□□ -1.69
SH3RF1-201ENST00000284637 KRTAP6-2Q3LI66 62 aa4.47□□□□□ -1.69
SH3RF1-201ENST00000284637 KRTAP9-7A8MTY7 169 aa4.43□□□□□ -1.7
SH3RF1-201ENST00000284637 USH2AO75445 5202 aa4.4□□□□□ -1.7
SH3RF1-201ENST00000284637 LCE5AQ5TCM9 118 aa4.36□□□□□ -1.71
SH3RF1-201ENST00000284637 DSTQ03001 7570 aaKnown RBP4.35□□□□□ -1.71
SH3RF1-201ENST00000284637 KRTAP9-4Q9BYQ2 154 aa4.32□□□□□ -1.72
SH3RF1-201ENST00000284637 LCE1AQ5T7P2 110 aa4.26□□□□□ -1.73
SH3RF1-201ENST00000284637 KMT2DO14686 5537 aa4.21□□□□□ -1.74
SH3RF1-201ENST00000284637 KRTAP2-2Q9BYT5 123 aa4.2□□□□□ -1.74
SH3RF1-201ENST00000284637 KRTAP9-6A0A140TA67 174 aa4.17□□□□□ -1.74
SH3RF1-201ENST00000284637 MACF1Q9UPN3 7388 aaKnown RBP4.12□□□□□ -1.75
SH3RF1-201ENST00000284637 KRTAP6-3Q3LI67 103 aa4.09□□□□□ -1.75
SH3RF1-201ENST00000284637 KRTAP20-1Q3LI63 56 aa4.05□□□□□ -1.76
SH3RF1-201ENST00000284637 LCE4AQ5TA78 99 aa4.01□□□□□ -1.77
SH3RF1-201ENST00000284637 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.96□□□□□ -1.78
SH3RF1-201ENST00000284637 MUC19Q7Z5P9 8384 aa3.95□□□□□ -1.78
SH3RF1-201ENST00000284637 LCE1CQ5T751 118 aa3.92□□□□□ -1.78
SH3RF1-201ENST00000284637 LCE1EQ5T753 118 aa3.92□□□□□ -1.78
SH3RF1-201ENST00000284637 LCE1FQ5T754 118 aa3.92□□□□□ -1.78
SH3RF1-201ENST00000284637 MUC12Q9UKN1 5478 aa3.9□□□□□ -1.79
SH3RF1-201ENST00000284637 SSPOA2VEC9 5147 aa3.88□□□□□ -1.79
SH3RF1-201ENST00000284637 KRTAP4-11Q9BYQ6 195 aa3.75□□□□□ -1.81
SH3RF1-201ENST00000284637 MDN1Q9NU22 5596 aa3.72□□□□□ -1.81
SH3RF1-201ENST00000284637 KRTAP5-5Q701N2 237 aaPredicted RBP3.71□□□□□ -1.82
SH3RF1-201ENST00000284637 KRTAP4-6Q9BYQ5 205 aa3.62□□□□□ -1.83
SH3RF1-201ENST00000284637 NEBP20929 6669 aa3.62□□□□□ -1.83
SH3RF1-201ENST00000284637 KRTAP5-9P26371 169 aa3.58□□□□□ -1.84
SH3RF1-201ENST00000284637 KRTAP20-2Q3LI61 65 aa3.5□□□□□ -1.85
SH3RF1-201ENST00000284637 KRTAP9-9Q9BYP9 154 aa3.47□□□□□ -1.85
SH3RF1-201ENST00000284637 KRTAP4-4Q9BYR3 166 aa3.41□□□□□ -1.86
SH3RF1-201ENST00000284637 KRTAP4-12Q9BQ66 201 aa3.27□□□□□ -1.89
SH3RF1-201ENST00000284637 KRTAP4-2Q9BYR5 136 aa3.27□□□□□ -1.89
SH3RF1-201ENST00000284637 GPR98Q8WXG9 6306 aa3.23□□□□□ -1.89
SH3RF1-201ENST00000284637 MUC5ACP98088 5654 aa3.17□□□□□ -1.9
SH3RF1-201ENST00000284637 KRTAP5-4Q6L8H1 288 aa3.12□□□□□ -1.91
SH3RF1-201ENST00000284637 HMCN1Q96RW7 5635 aa3.05□□□□□ -1.92
SH3RF1-201ENST00000284637 KRTAP5-10Q6L8G5 202 aa2.82□□□□□ -1.96
SH3RF1-201ENST00000284637 AHNAK2Q8IVF2 5795 aa2.78□□□□□ -1.96
SH3RF1-201ENST00000284637 KRTAP5-3Q6L8H2 238 aa2.74□□□□□ -1.97
SH3RF1-201ENST00000284637 KRTAP5-8O75690 187 aa2.56□□□□□ -2
SH3RF1-201ENST00000284637 KRTAP5-2Q701N4 177 aa2.56□□□□□ -2
SH3RF1-201ENST00000284637 KRTAP21-1Q3LI58 79 aa2.45□□□□□ -2.02
SH3RF1-201ENST00000284637 MUC5BQ9HC84 5762 aaPredicted RBP2.43□□□□□ -2.02
SH3RF1-201ENST00000284637 KRTAP5-1Q6L8H4 278 aa2.39□□□□□ -2.03
SH3RF1-201ENST00000284637 AHNAKQ09666 5890 aaKnown RBP2.36□□□□□ -2.03
SH3RF1-201ENST00000284637 KRTAP21-2Q3LI59 83 aa2.29□□□□□ -2.04
SH3RF1-201ENST00000284637 KRTAP5-11Q6L8G4 156 aa2.29□□□□□ -2.04
SH3RF1-201ENST00000284637 PHGR1C9JFL3 82 aa2.24□□□□□ -2.05
SH3RF1-201ENST00000284637 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.09□□□□□ -2.08
SH3RF1-201ENST00000284637 KRTAP5-7Q6L8G8 165 aa1.92□□□□□ -2.1
SH3RF1-201ENST00000284637 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 108.9 ms