RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 SPRR2EP22531 72 aa1.44□□□□□ -2.18
VPS13C-201ENST00000249837 SPRR2BP35325 72 aa1.44□□□□□ -2.18
VPS13C-201ENST00000249837 SPRR2AP35326 72 aa1.44□□□□□ -2.18
VPS13C-201ENST00000249837 UBR4Q5T4S7 5183 aa1.44□□□□□ -2.18
VPS13C-201ENST00000249837 MT3P25713 68 aa1.44□□□□□ -2.18
VPS13C-201ENST00000249837 MUC2Q02817 5179 aa1.44□□□□□ -2.18
VPS13C-201ENST00000249837 ABCA13Q86UQ4 5058 aa1.43□□□□□ -2.18
VPS13C-201ENST00000249837 FSIP2Q5CZC0 6907 aa1.42□□□□□ -2.18
VPS13C-201ENST00000249837 KRTAP4-9Q9BYQ8 210 aa1.42□□□□□ -2.18
VPS13C-201ENST00000249837 LCE2AQ5TA79 106 aaPredicted RBP1.41□□□□□ -2.18
VPS13C-201ENST00000249837 LCE3DQ9BYE3 92 aa1.41□□□□□ -2.18
VPS13C-201ENST00000249837 LCE3EQ5T5B0 92 aa1.41□□□□□ -2.18
VPS13C-201ENST00000249837 RNF213Q63HN8 5207 aa1.41□□□□□ -2.18
VPS13C-201ENST00000249837 KRTAP19-6Q3LI70 58 aa1.4□□□□□ -2.19
VPS13C-201ENST00000249837 KRTAP9-6A0A140TA67 174 aa1.39□□□□□ -2.19
VPS13C-201ENST00000249837 OBSCNQ5VST9 7968 aa1.39□□□□□ -2.19
VPS13C-201ENST00000249837 SPRR2DP22532 72 aa1.38□□□□□ -2.19
VPS13C-201ENST00000249837 FAT4Q6V0I7 4981 aa1.37□□□□□ -2.19
VPS13C-201ENST00000249837 PRM1P04553 51 aa1.36□□□□□ -2.19
VPS13C-201ENST00000249837 LCE2DQ5TA82 110 aaPredicted RBP1.35□□□□□ -2.19
VPS13C-201ENST00000249837 DSTQ03001 7570 aaKnown RBP1.35□□□□□ -2.19
VPS13C-201ENST00000249837 KRTAP9-2Q9BYQ4 174 aa1.33□□□□□ -2.2
VPS13C-201ENST00000249837 MT1AP04731 61 aa1.32□□□□□ -2.2
VPS13C-201ENST00000249837 KRTAP6-1Q3LI64 71 aa1.31□□□□□ -2.2
VPS13C-201ENST00000249837 KMT2DO14686 5537 aa1.3□□□□□ -2.2
VPS13C-201ENST00000249837 LCE5AQ5TCM9 118 aa1.29□□□□□ -2.2
VPS13C-201ENST00000249837 MT4P47944 62 aa1.29□□□□□ -2.2
VPS13C-201ENST00000249837 KRTAP9-7A8MTY7 169 aa1.28□□□□□ -2.2
VPS13C-201ENST00000249837 FCGBPQ9Y6R7 5405 aaPredicted RBP1.28□□□□□ -2.2
VPS13C-201ENST00000249837 KRTAP6-2Q3LI66 62 aa1.27□□□□□ -2.21
VPS13C-201ENST00000249837 KRTAP20-1Q3LI63 56 aa1.25□□□□□ -2.21
VPS13C-201ENST00000249837 USH2AO75445 5202 aa1.25□□□□□ -2.21
VPS13C-201ENST00000249837 LCE1AQ5T7P2 110 aa1.24□□□□□ -2.21
VPS13C-201ENST00000249837 MACF1Q9UPN3 7388 aaKnown RBP1.24□□□□□ -2.21
VPS13C-201ENST00000249837 LCE1BQ5T7P3 118 aa1.23□□□□□ -2.21
VPS13C-201ENST00000249837 LCE1DQ5T752 114 aa1.22□□□□□ -2.21
VPS13C-201ENST00000249837 KRTAP9-4Q9BYQ2 154 aa1.22□□□□□ -2.21
VPS13C-201ENST00000249837 NEBP20929 6669 aa1.18□□□□□ -2.22
VPS13C-201ENST00000249837 SSPOA2VEC9 5147 aa1.17□□□□□ -2.22
VPS13C-201ENST00000249837 KRTAP2-2Q9BYT5 123 aa1.15□□□□□ -2.23
VPS13C-201ENST00000249837 KRTAP5-5Q701N2 237 aaPredicted RBP1.14□□□□□ -2.23
VPS13C-201ENST00000249837 KRTAP6-3Q3LI67 103 aa1.14□□□□□ -2.23
VPS13C-201ENST00000249837 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.14□□□□□ -2.23
VPS13C-201ENST00000249837 MUC12Q9UKN1 5478 aa1.1□□□□□ -2.23
VPS13C-201ENST00000249837 KRTAP5-9P26371 169 aa1.08□□□□□ -2.24
VPS13C-201ENST00000249837 KRTAP4-6Q9BYQ5 205 aa1.08□□□□□ -2.24
VPS13C-201ENST00000249837 KRTAP4-11Q9BYQ6 195 aa1.08□□□□□ -2.24
VPS13C-201ENST00000249837 LCE4AQ5TA78 99 aa1.06□□□□□ -2.24
VPS13C-201ENST00000249837 MDN1Q9NU22 5596 aa1.04□□□□□ -2.24
VPS13C-201ENST00000249837 MUC19Q7Z5P9 8384 aa1.04□□□□□ -2.24
VPS13C-201ENST00000249837 LCE1CQ5T751 118 aa1.03□□□□□ -2.25
VPS13C-201ENST00000249837 LCE1EQ5T753 118 aa1.03□□□□□ -2.25
VPS13C-201ENST00000249837 LCE1FQ5T754 118 aa1.03□□□□□ -2.25
VPS13C-201ENST00000249837 GPR98Q8WXG9 6306 aa1.02□□□□□ -2.25
VPS13C-201ENST00000249837 KRTAP20-2Q3LI61 65 aa1□□□□□ -2.25
VPS13C-201ENST00000249837 KRTAP9-9Q9BYP9 154 aa1□□□□□ -2.25
VPS13C-201ENST00000249837 KRTAP4-4Q9BYR3 166 aa0.96□□□□□ -2.26
VPS13C-201ENST00000249837 KRTAP5-4Q6L8H1 288 aa0.96□□□□□ -2.26
VPS13C-201ENST00000249837 KRTAP4-12Q9BQ66 201 aa0.92□□□□□ -2.26
VPS13C-201ENST00000249837 KRTAP4-2Q9BYR5 136 aa0.92□□□□□ -2.26
VPS13C-201ENST00000249837 KRTAP5-10Q6L8G5 202 aa0.84□□□□□ -2.27
VPS13C-201ENST00000249837 HMCN1Q96RW7 5635 aa0.84□□□□□ -2.28
VPS13C-201ENST00000249837 KRTAP5-2Q701N4 177 aa0.83□□□□□ -2.28
VPS13C-201ENST00000249837 KRTAP5-3Q6L8H2 238 aa0.81□□□□□ -2.28
VPS13C-201ENST00000249837 MUC5ACP98088 5654 aa0.8□□□□□ -2.28
VPS13C-201ENST00000249837 AHNAK2Q8IVF2 5795 aa0.76□□□□□ -2.29
VPS13C-201ENST00000249837 KRTAP5-8O75690 187 aa0.75□□□□□ -2.29
VPS13C-201ENST00000249837 KRTAP21-2Q3LI59 83 aa0.74□□□□□ -2.29
VPS13C-201ENST00000249837 KRTAP5-1Q6L8H4 278 aa0.73□□□□□ -2.29
VPS13C-201ENST00000249837 MUC5BQ9HC84 5762 aaPredicted RBP0.7□□□□□ -2.3
VPS13C-201ENST00000249837 AHNAKQ09666 5890 aaKnown RBP0.67□□□□□ -2.3
VPS13C-201ENST00000249837 PHGR1C9JFL3 82 aa0.67□□□□□ -2.3
VPS13C-201ENST00000249837 KRTAP5-7Q6L8G8 165 aa0.67□□□□□ -2.3
VPS13C-201ENST00000249837 KRTAP5-11Q6L8G4 156 aa0.66□□□□□ -2.3
VPS13C-201ENST00000249837 KRTAP21-1Q3LI58 79 aa0.66□□□□□ -2.3
VPS13C-201ENST00000249837 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.65□□□□□ -2.3
VPS13C-201ENST00000249837 MUC16Q8WXI7 14507 aa0.51□□□□□ -2.33
Retrieved 77 of 20,778 RNA–protein pairs in 49.6 ms