RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 LINC00313P59037 77 aa10.85□□□□□ -0.67
PTCD3-220ENST00000627371 IGHV6-1A0A0B4J1U7 121 aa10.83□□□□□ -0.68
PTCD3-220ENST00000627371 A0A0U1RQV1 116 aa10.83□□□□□ -0.68
PTCD3-220ENST00000627371 A0A1B0GVX0 72 aa10.83□□□□□ -0.68
PTCD3-220ENST00000627371 F8W1H4 67 aa10.83□□□□□ -0.68
PTCD3-220ENST00000627371 NREPQ16612 68 aa10.83□□□□□ -0.68
PTCD3-220ENST00000627371 C20orf166-AS1Q96NR2 134 aa10.83□□□□□ -0.68
PTCD3-220ENST00000627371 NOTCH2NLQ7Z3S9 236 aa10.81□□□□□ -0.68
PTCD3-220ENST00000627371 A8MUU9 505 aa10.8□□□□□ -0.68
PTCD3-220ENST00000627371 KRTAP16-1A8MUX0 517 aa10.79□□□□□ -0.68
PTCD3-220ENST00000627371 C8orf87E5RJ46 101 aa10.79□□□□□ -0.68
PTCD3-220ENST00000627371 NDUFB1O75438 58 aa10.78□□□□□ -0.68
PTCD3-220ENST00000627371 A8MWP4 228 aa10.77□□□□□ -0.69
PTCD3-220ENST00000627371 ATP11AUNQ6ZP68 121 aa10.76□□□□□ -0.69
PTCD3-220ENST00000627371 FAT4Q6V0I7 4981 aa10.75□□□□□ -0.69
PTCD3-220ENST00000627371 ETDBQ3ZM63 59 aa10.74□□□□□ -0.69
PTCD3-220ENST00000627371 IGKV3D-7A0A0C4DH55 119 aa10.72□□□□□ -0.69
PTCD3-220ENST00000627371 Q6ZVQ6 151 aa10.71□□□□□ -0.69
PTCD3-220ENST00000627371 PRR15Q8IV56 129 aa10.69□□□□□ -0.7
PTCD3-220ENST00000627371 C8orf17Q9NRJ1 99 aa10.68□□□□□ -0.7
PTCD3-220ENST00000627371 BPY2O14599 106 aa10.67□□□□□ -0.7
PTCD3-220ENST00000627371 LINC00846Q9NV44 126 aa10.67□□□□□ -0.7
PTCD3-220ENST00000627371 UBL5Q9BZL1 73 aa10.64□□□□□ -0.71
PTCD3-220ENST00000627371 A0A1B0GV90 55 aa10.63□□□□□ -0.71
PTCD3-220ENST00000627371 K7EQZ3 153 aa10.63□□□□□ -0.71
PTCD3-220ENST00000627371 KRTAP3-3Q9BYR6 98 aa10.6□□□□□ -0.71
PTCD3-220ENST00000627371 KRTAP3-2Q9BYR7 98 aa10.6□□□□□ -0.71
PTCD3-220ENST00000627371 MMP24-AS1A0A0U1RRL7 71 aa10.59□□□□□ -0.71
PTCD3-220ENST00000627371 Q8N9P0 234 aaPredicted RBP10.59□□□□□ -0.71
PTCD3-220ENST00000627371 KRTAP19-2Q3LHN2 52 aa10.56□□□□□ -0.72
PTCD3-220ENST00000627371 LCE2AQ5TA79 106 aaPredicted RBP10.56□□□□□ -0.72
PTCD3-220ENST00000627371 TMEM254Q8TBM7 123 aa10.55□□□□□ -0.72
PTCD3-220ENST00000627371 Q8N9L7 120 aa10.53□□□□□ -0.72
PTCD3-220ENST00000627371 hDV103S1A0JD37 113 aa10.52□□□□□ -0.73
PTCD3-220ENST00000627371 LCE2CQ5TA81 110 aa10.52□□□□□ -0.73
PTCD3-220ENST00000627371 MRPL34Q9BQ48 92 aaKnown RBP10.52□□□□□ -0.73
PTCD3-220ENST00000627371 ZCCHC13Q8WW36 166 aaKnown RBP10.51□□□□□ -0.73
PTCD3-220ENST00000627371 ACYP1P07311 99 aa10.49□□□□□ -0.73
PTCD3-220ENST00000627371 FAM240AA0A1B0GVK7 77 aa10.47□□□□□ -0.73
PTCD3-220ENST00000627371 CXCL6P80162 114 aa10.45□□□□□ -0.74
PTCD3-220ENST00000627371 WFDC13Q8IUB5 93 aa10.44□□□□□ -0.74
PTCD3-220ENST00000627371 CASC2Q6XLA1 102 aa10.43□□□□□ -0.74
PTCD3-220ENST00000627371 COX6B2Q6YFQ2 88 aa10.42□□□□□ -0.74
PTCD3-220ENST00000627371 NDUFS5O43920 106 aa10.4□□□□□ -0.74
PTCD3-220ENST00000627371 HCG22E2RYF7 251 aa10.39□□□□□ -0.75
PTCD3-220ENST00000627371 MT1HP80294 61 aa10.37□□□□□ -0.75
PTCD3-220ENST00000627371 HRES1P13985 223 aa10.35□□□□□ -0.75
PTCD3-220ENST00000627371 FLGP20930 4061 aaPredicted RBP10.35□□□□□ -0.75
PTCD3-220ENST00000627371 SPINK7P58062 85 aa10.34□□□□□ -0.75
PTCD3-220ENST00000627371 ATP5EP2Q5VTU8 51 aa10.33□□□□□ -0.76
PTCD3-220ENST00000627371 MPLKIPQ8TAP9 179 aa10.31□□□□□ -0.76
PTCD3-220ENST00000627371 RBM12B-AS1Q9P1G2 102 aa10.28□□□□□ -0.76
PTCD3-220ENST00000627371 Q5W150 140 aa10.27□□□□□ -0.77
PTCD3-220ENST00000627371 J3QR89 54 aa10.25□□□□□ -0.77
PTCD3-220ENST00000627371 LINC00643Q86TS7 51 aa10.25□□□□□ -0.77
PTCD3-220ENST00000627371 FAM236DA0A1B0GTK5 79 aa10.23□□□□□ -0.77
PTCD3-220ENST00000627371 FAM236CP0DP71 79 aa10.23□□□□□ -0.77
PTCD3-220ENST00000627371 M0R2T5 61 aa10.19□□□□□ -0.78
PTCD3-220ENST00000627371 HIST1H4AP62805 103 aaKnown RBP10.19□□□□□ -0.78
PTCD3-220ENST00000627371 TP53AIP1Q9HCN2 124 aa10.18□□□□□ -0.78
PTCD3-220ENST00000627371 C7orf65Q6ZTY9 151 aa10.17□□□□□ -0.78
PTCD3-220ENST00000627371 IGKV2D-30A0A075B6S6 120 aa10.16□□□□□ -0.78
PTCD3-220ENST00000627371 IGKV2-30P06310 120 aa10.16□□□□□ -0.78
PTCD3-220ENST00000627371 KRTAP10-6P60371 365 aaPredicted RBP10.11□□□□□ -0.79
PTCD3-220ENST00000627371 A0A087WVE0 104 aa10.09□□□□□ -0.79
PTCD3-220ENST00000627371 LORP23490 312 aaPredicted RBP10.09□□□□□ -0.79
PTCD3-220ENST00000627371 K7ERU9 68 aa10.02□□□□□ -0.81
PTCD3-220ENST00000627371 TRAV22A0A0B4J277 110 aa10.01□□□□□ -0.81
PTCD3-220ENST00000627371 UQCRQO14949 82 aa9.98□□□□□ -0.81
PTCD3-220ENST00000627371 C4orf26Q17RF5 130 aa9.95□□□□□ -0.82
PTCD3-220ENST00000627371 H1FX-AS1Q4G0G2 97 aa9.94□□□□□ -0.82
PTCD3-220ENST00000627371 KRTAP9-2Q9BYQ4 174 aa9.94□□□□□ -0.82
PTCD3-220ENST00000627371 LOC101927531A0A1B0GV80 90 aa9.91□□□□□ -0.82
PTCD3-220ENST00000627371 CYP4F30PQ9H0H9 118 aa9.9□□□□□ -0.82
PTCD3-220ENST00000627371 H0Y9P7 68 aa9.89□□□□□ -0.83
PTCD3-220ENST00000627371 ATOX1O00244 68 aa9.89□□□□□ -0.83
PTCD3-220ENST00000627371 OCR1Q9BZK8 76 aa9.89□□□□□ -0.83
PTCD3-220ENST00000627371 KRTAP9-8Q9BYQ0 159 aa9.87□□□□□ -0.83
PTCD3-220ENST00000627371 IMUPQ9GZP8 106 aa9.87□□□□□ -0.83
PTCD3-220ENST00000627371 MT-ATP8P03928 68 aa9.86□□□□□ -0.83
PTCD3-220ENST00000627371 C1orf64Q8NEQ6 169 aa9.82□□□□□ -0.84
PTCD3-220ENST00000627371 KRTAP3-1Q9BYR8 98 aa9.82□□□□□ -0.84
PTCD3-220ENST00000627371 SCGB1A1P11684 91 aa9.8□□□□□ -0.84
PTCD3-220ENST00000627371 MP68P56378 58 aa9.77□□□□□ -0.85
PTCD3-220ENST00000627371 MT2AP02795 61 aa9.76□□□□□ -0.85
PTCD3-220ENST00000627371 C5orf47Q569G3 176 aa9.76□□□□□ -0.85
PTCD3-220ENST00000627371 LINC00208Q96KT6 92 aa9.76□□□□□ -0.85
PTCD3-220ENST00000627371 FAM236AA0A1B0GUQ0 79 aa9.7□□□□□ -0.86
PTCD3-220ENST00000627371 FAM236BA0A1B0GV22 79 aa9.7□□□□□ -0.86
PTCD3-220ENST00000627371 H3BPC8 53 aa9.69□□□□□ -0.86
PTCD3-220ENST00000627371 MT1FP04733 61 aa9.69□□□□□ -0.86
PTCD3-220ENST00000627371 S4R3F8 94 aa9.68□□□□□ -0.86
PTCD3-220ENST00000627371 KLKP1Q107X0 134 aa9.66□□□□□ -0.86
PTCD3-220ENST00000627371 KRTAP10-10P60014 251 aa9.64□□□□□ -0.87
PTCD3-220ENST00000627371 SMIM20Q8N5G0 67 aa9.63□□□□□ -0.87
PTCD3-220ENST00000627371 LCA10Q71F78 164 aa9.62□□□□□ -0.87
PTCD3-220ENST00000627371 TRAV7A0A075B6U4 112 aa9.6□□□□□ -0.87
PTCD3-220ENST00000627371 FSIP2Q5CZC0 6907 aa9.56□□□□□ -0.88
PTCD3-220ENST00000627371 A8MUN3 132 aa9.56□□□□□ -0.88
PTCD3-220ENST00000627371 CSAG1Q6PB30 78 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 170.2 ms