RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 J3KT08 172 aa8.42□□□□□ -1.06
TRIM28-206ENST00000595974 A0A1B0GVX0 72 aa8.41□□□□□ -1.06
TRIM28-206ENST00000595974 C9orf118A6NHY6 69 aa8.41□□□□□ -1.06
TRIM28-206ENST00000595974 NOTCH2NLQ7Z3S9 236 aa8.41□□□□□ -1.06
TRIM28-206ENST00000595974 C8orf87E5RJ46 101 aa8.4□□□□□ -1.06
TRIM28-206ENST00000595974 C14orf132Q9NPU4 83 aa8.39□□□□□ -1.07
TRIM28-206ENST00000595974 FLGP20930 4061 aaPredicted RBP8.38□□□□□ -1.07
TRIM28-206ENST00000595974 TAX1BP3O14907 124 aa8.38□□□□□ -1.07
TRIM28-206ENST00000595974 A0A1W2PPM0 123 aa8.37□□□□□ -1.07
TRIM28-206ENST00000595974 H3BT86 120 aa8.36□□□□□ -1.07
TRIM28-206ENST00000595974 M0R2T5 61 aa8.33□□□□□ -1.08
TRIM28-206ENST00000595974 NDUFB1O75438 58 aa8.33□□□□□ -1.08
TRIM28-206ENST00000595974 A8MWP4 228 aa8.3□□□□□ -1.08
TRIM28-206ENST00000595974 KRTAP10-6P60371 365 aaPredicted RBP8.3□□□□□ -1.08
TRIM28-206ENST00000595974 LORP23490 312 aaPredicted RBP8.29□□□□□ -1.08
TRIM28-206ENST00000595974 LCE2DQ5TA82 110 aaPredicted RBP8.29□□□□□ -1.08
TRIM28-206ENST00000595974 MTURNQ8N3F0 131 aa8.29□□□□□ -1.08
TRIM28-206ENST00000595974 NREPQ16612 68 aa8.27□□□□□ -1.09
TRIM28-206ENST00000595974 C8orf17Q9NRJ1 99 aa8.26□□□□□ -1.09
TRIM28-206ENST00000595974 SPCS1Q9Y6A9 102 aa8.26□□□□□ -1.09
TRIM28-206ENST00000595974 IGKV3D-7A0A0C4DH55 119 aa8.25□□□□□ -1.09
TRIM28-206ENST00000595974 Q8N9P0 234 aaPredicted RBP8.25□□□□□ -1.09
TRIM28-206ENST00000595974 COL5A1-AS1Q5SY13 56 aa8.24□□□□□ -1.09
TRIM28-206ENST00000595974 ZCCHC13Q8WW36 166 aaKnown RBP8.24□□□□□ -1.09
TRIM28-206ENST00000595974 PRR15Q8IV56 129 aa8.22□□□□□ -1.09
TRIM28-206ENST00000595974 HRES1P13985 223 aa8.2□□□□□ -1.1
TRIM28-206ENST00000595974 MPLKIPQ8TAP9 179 aa8.2□□□□□ -1.1
TRIM28-206ENST00000595974 Q6ZVQ6 151 aa8.19□□□□□ -1.1
TRIM28-206ENST00000595974 RBM12B-AS1Q9P1G2 102 aa8.19□□□□□ -1.1
TRIM28-206ENST00000595974 FAM236DA0A1B0GTK5 79 aa8.18□□□□□ -1.1
TRIM28-206ENST00000595974 FAM236CP0DP71 79 aa8.18□□□□□ -1.1
TRIM28-206ENST00000595974 MMP24-AS1A0A0U1RRL7 71 aa8.16□□□□□ -1.1
TRIM28-206ENST00000595974 KRTAP9-6A0A140TA67 174 aa8.16□□□□□ -1.1
TRIM28-206ENST00000595974 SMCPP49901 116 aaPredicted RBP8.16□□□□□ -1.1
TRIM28-206ENST00000595974 TMEM254Q8TBM7 123 aa8.15□□□□□ -1.1
TRIM28-206ENST00000595974 K7EP34 96 aa8.14□□□□□ -1.11
TRIM28-206ENST00000595974 K7EQZ3 153 aa8.14□□□□□ -1.11
TRIM28-206ENST00000595974 BPY2O14599 106 aa8.14□□□□□ -1.11
TRIM28-206ENST00000595974 MRPL34Q9BQ48 92 aaKnown RBP8.13□□□□□ -1.11
TRIM28-206ENST00000595974 PRO0461Q9UI25 63 aa8.13□□□□□ -1.11
TRIM28-206ENST00000595974 SPINK7P58062 85 aa8.12□□□□□ -1.11
TRIM28-206ENST00000595974 hDV103S1A0JD37 113 aa8.11□□□□□ -1.11
TRIM28-206ENST00000595974 GTF2H5Q6ZYL4 71 aa8.06□□□□□ -1.12
TRIM28-206ENST00000595974 PCP4L1A6NKN8 68 aa8.04□□□□□ -1.12
TRIM28-206ENST00000595974 NDUFS5O43920 106 aa8.04□□□□□ -1.12
TRIM28-206ENST00000595974 UBL5Q9BZL1 73 aa8.04□□□□□ -1.12
TRIM28-206ENST00000595974 FSIP2Q5CZC0 6907 aa8.04□□□□□ -1.12
TRIM28-206ENST00000595974 WFDC13Q8IUB5 93 aa8.03□□□□□ -1.12
TRIM28-206ENST00000595974 Q8N9L7 120 aa8.03□□□□□ -1.12
TRIM28-206ENST00000595974 LINC00846Q9NV44 126 aa8.03□□□□□ -1.12
TRIM28-206ENST00000595974 CRCT1Q9UGL9 99 aa8.03□□□□□ -1.12
TRIM28-206ENST00000595974 KRTAP9-8Q9BYQ0 159 aa8.02□□□□□ -1.13
TRIM28-206ENST00000595974 CASC2Q6XLA1 102 aa8□□□□□ -1.13
TRIM28-206ENST00000595974 F8W1H4 67 aa7.99□□□□□ -1.13
TRIM28-206ENST00000595974 HCG22E2RYF7 251 aa7.94□□□□□ -1.14
TRIM28-206ENST00000595974 ETDBQ3ZM63 59 aa7.94□□□□□ -1.14
TRIM28-206ENST00000595974 C7orf65Q6ZTY9 151 aa7.93□□□□□ -1.14
TRIM28-206ENST00000595974 MT2AP02795 61 aa7.92□□□□□ -1.14
TRIM28-206ENST00000595974 Q5W150 140 aa7.92□□□□□ -1.14
TRIM28-206ENST00000595974 IGKV2D-30A0A075B6S6 120 aa7.91□□□□□ -1.14
TRIM28-206ENST00000595974 IGKV2-30P06310 120 aa7.91□□□□□ -1.14
TRIM28-206ENST00000595974 CXCL6P80162 114 aa7.91□□□□□ -1.14
TRIM28-206ENST00000595974 MT1FP04733 61 aa7.86□□□□□ -1.15
TRIM28-206ENST00000595974 H1FX-AS1Q4G0G2 97 aa7.84□□□□□ -1.15
TRIM28-206ENST00000595974 KRTAP10-10P60014 251 aa7.83□□□□□ -1.16
TRIM28-206ENST00000595974 ACYP1P07311 99 aa7.79□□□□□ -1.16
TRIM28-206ENST00000595974 TP53AIP1Q9HCN2 124 aa7.79□□□□□ -1.16
TRIM28-206ENST00000595974 FAM240AA0A1B0GVK7 77 aa7.77□□□□□ -1.17
TRIM28-206ENST00000595974 KRTAP9-3Q9BYQ3 159 aa7.77□□□□□ -1.17
TRIM28-206ENST00000595974 USH2AO75445 5202 aa7.77□□□□□ -1.17
TRIM28-206ENST00000595974 C4orf26Q17RF5 130 aa7.75□□□□□ -1.17
TRIM28-206ENST00000595974 ATP5EP2Q5VTU8 51 aa7.73□□□□□ -1.17
TRIM28-206ENST00000595974 LCE2BO14633 110 aa7.71□□□□□ -1.18
TRIM28-206ENST00000595974 SSPOA2VEC9 5147 aa7.7□□□□□ -1.18
TRIM28-206ENST00000595974 TRAV22A0A0B4J277 110 aa7.64□□□□□ -1.19
TRIM28-206ENST00000595974 HIST1H4AP62805 103 aaKnown RBP7.63□□□□□ -1.19
TRIM28-206ENST00000595974 C1orf64Q8NEQ6 169 aa7.63□□□□□ -1.19
TRIM28-206ENST00000595974 KRTAP3-1Q9BYR8 98 aa7.62□□□□□ -1.19
TRIM28-206ENST00000595974 A0A1B0GV90 55 aa7.61□□□□□ -1.19
TRIM28-206ENST00000595974 LINC00643Q86TS7 51 aa7.59□□□□□ -1.19
TRIM28-206ENST00000595974 CYP4F30PQ9H0H9 118 aa7.59□□□□□ -1.19
TRIM28-206ENST00000595974 S4R3F8 94 aa7.59□□□□□ -1.19
TRIM28-206ENST00000595974 LOC101927531A0A1B0GV80 90 aa7.58□□□□□ -1.2
TRIM28-206ENST00000595974 C5orf47Q569G3 176 aa7.57□□□□□ -1.2
TRIM28-206ENST00000595974 UQCRQO14949 82 aa7.56□□□□□ -1.2
TRIM28-206ENST00000595974 KRTAP19-1Q8IUB9 90 aa7.55□□□□□ -1.2
TRIM28-206ENST00000595974 ATOX1O00244 68 aa7.53□□□□□ -1.2
TRIM28-206ENST00000595974 LCA10Q71F78 164 aa7.53□□□□□ -1.2
TRIM28-206ENST00000595974 FCGBPQ9Y6R7 5405 aaPredicted RBP7.52□□□□□ -1.21
TRIM28-206ENST00000595974 A0A087WVE0 104 aa7.52□□□□□ -1.21
TRIM28-206ENST00000595974 CSAG1Q6PB30 78 aa7.52□□□□□ -1.21
TRIM28-206ENST00000595974 H0Y9P7 68 aa7.51□□□□□ -1.21
TRIM28-206ENST00000595974 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.47□□□□□ -1.21
TRIM28-206ENST00000595974 J3QR89 54 aa7.47□□□□□ -1.21
TRIM28-206ENST00000595974 FAM236AA0A1B0GUQ0 79 aa7.46□□□□□ -1.22
TRIM28-206ENST00000595974 FAM236BA0A1B0GV22 79 aa7.46□□□□□ -1.22
TRIM28-206ENST00000595974 KRTAP19-6Q3LI70 58 aa7.45□□□□□ -1.22
TRIM28-206ENST00000595974 KRTAP3-3Q9BYR6 98 aa7.41□□□□□ -1.22
TRIM28-206ENST00000595974 OCR1Q9BZK8 76 aa7.41□□□□□ -1.22
TRIM28-206ENST00000595974 MP68P56378 58 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms