RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	C8orf87	E5RJ46	101 aa		11.18	□□□□□ -0.62
CD44-222	ENST00000526025	NDUFB1	O75438	58 aa		11.18	□□□□□ -0.62
CD44-222	ENST00000526025		Q75L30	129 aa		11.18	□□□□□ -0.62
CD44-222	ENST00000526025		A8MWP4	228 aa		11.17	□□□□□ -0.62
CD44-222	ENST00000526025	DSCR10	P59022	87 aa		11.17	□□□□□ -0.62
CD44-222	ENST00000526025	IGHV6-1	A0A0B4J1U7	121 aa		11.16	□□□□□ -0.62
CD44-222	ENST00000526025		Q6ZVQ6	151 aa		11.15	□□□□□ -0.62
CD44-222	ENST00000526025	C20orf166-AS1	Q96NR2	134 aa		11.15	□□□□□ -0.62
CD44-222	ENST00000526025	LINC00846	Q9NV44	126 aa		11.13	□□□□□ -0.63
CD44-222	ENST00000526025		A8MUU9	505 aa		11.12	□□□□□ -0.63
CD44-222	ENST00000526025	KRTAP16-1	A8MUX0	517 aa		11.12	□□□□□ -0.63
CD44-222	ENST00000526025	UBL5	Q9BZL1	73 aa		11.12	□□□□□ -0.63
CD44-222	ENST00000526025	MUC2	Q02817	5179 aa		11.1	□□□□□ -0.63
CD44-222	ENST00000526025	IGKV3D-7	A0A0C4DH55	119 aa		11.1	□□□□□ -0.63
CD44-222	ENST00000526025	NOTCH2NL	Q7Z3S9	236 aa		11.1	□□□□□ -0.63
CD44-222	ENST00000526025	BPY2	O14599	106 aa		11.09	□□□□□ -0.63
CD44-222	ENST00000526025	PCOTH	Q58A44	107 aa		11.09	□□□□□ -0.63
CD44-222	ENST00000526025	PRR15	Q8IV56	129 aa		11.09	□□□□□ -0.63
CD44-222	ENST00000526025	FAM240A	A0A1B0GVK7	77 aa		11.05	□□□□□ -0.64
CD44-222	ENST00000526025	ACYP1	P07311	99 aa		11.05	□□□□□ -0.64
CD44-222	ENST00000526025	C8orf17	Q9NRJ1	99 aa		11.05	□□□□□ -0.64
CD44-222	ENST00000526025	ATP11AUN	Q6ZP68	121 aa		11.04	□□□□□ -0.64
CD44-222	ENST00000526025		K7EQZ3	153 aa		11.01	□□□□□ -0.65
CD44-222	ENST00000526025	KRTAP4-1	Q9BYQ7	146 aa		11	□□□□□ -0.65
CD44-222	ENST00000526025	MMP24-AS1	A0A0U1RRL7	71 aa		10.97	□□□□□ -0.65
CD44-222	ENST00000526025		A0A0U1RQV1	116 aa		10.96	□□□□□ -0.65
CD44-222	ENST00000526025		Q8N9P0	234 aa	Predicted RBP	10.96	□□□□□ -0.65
CD44-222	ENST00000526025	CXCL6	P80162	114 aa		10.95	□□□□□ -0.66
CD44-222	ENST00000526025	TMEM254	Q8TBM7	123 aa		10.94	□□□□□ -0.66
CD44-222	ENST00000526025	hDV103S1	A0JD37	113 aa		10.91	□□□□□ -0.66
CD44-222	ENST00000526025		Q8N9L7	120 aa		10.9	□□□□□ -0.66
CD44-222	ENST00000526025	MRPL34	Q9BQ48	92 aa	Known RBP	10.89	□□□□□ -0.67
CD44-222	ENST00000526025		J3QR89	54 aa		10.86	□□□□□ -0.67
CD44-222	ENST00000526025	ATP5EP2	Q5VTU8	51 aa		10.86	□□□□□ -0.67
CD44-222	ENST00000526025	ZCCHC13	Q8WW36	166 aa	Known RBP	10.84	□□□□□ -0.67
CD44-222	ENST00000526025	CASC2	Q6XLA1	102 aa		10.83	□□□□□ -0.68
CD44-222	ENST00000526025	FAT4	Q6V0I7	4981 aa		10.82	□□□□□ -0.68
CD44-222	ENST00000526025	HCG22	E2RYF7	251 aa		10.81	□□□□□ -0.68
CD44-222	ENST00000526025	WFDC13	Q8IUB5	93 aa		10.8	□□□□□ -0.68
CD44-222	ENST00000526025	LINC00643	Q86TS7	51 aa		10.79	□□□□□ -0.68
CD44-222	ENST00000526025	NDUFS5	O43920	106 aa		10.74	□□□□□ -0.69
CD44-222	ENST00000526025	KRTAP19-2	Q3LHN2	52 aa		10.73	□□□□□ -0.69
CD44-222	ENST00000526025	LCE2C	Q5TA81	110 aa		10.66	□□□□□ -0.7
CD44-222	ENST00000526025		K7ERU9	68 aa		10.65	□□□□□ -0.7
CD44-222	ENST00000526025	LCE2A	Q5TA79	106 aa	Predicted RBP	10.64	□□□□□ -0.71
CD44-222	ENST00000526025	SPINK7	P58062	85 aa		10.63	□□□□□ -0.71
CD44-222	ENST00000526025	HIST1H4A	P62805	103 aa	Known RBP	10.63	□□□□□ -0.71
CD44-222	ENST00000526025	TP53AIP1	Q9HCN2	124 aa		10.63	□□□□□ -0.71
CD44-222	ENST00000526025	HRES1	P13985	223 aa		10.61	□□□□□ -0.71
CD44-222	ENST00000526025		Q5W150	140 aa		10.6	□□□□□ -0.71
CD44-222	ENST00000526025	MPLKIP	Q8TAP9	179 aa		10.59	□□□□□ -0.71
CD44-222	ENST00000526025	COX6B2	Q6YFQ2	88 aa		10.58	□□□□□ -0.72
CD44-222	ENST00000526025	FLG	P20930	4061 aa	Predicted RBP	10.54	□□□□□ -0.72
CD44-222	ENST00000526025	RBM12B-AS1	Q9P1G2	102 aa		10.54	□□□□□ -0.72
CD44-222	ENST00000526025		A0A087WVE0	104 aa		10.52	□□□□□ -0.73
CD44-222	ENST00000526025	C7orf65	Q6ZTY9	151 aa		10.51	□□□□□ -0.73
CD44-222	ENST00000526025	MT1H	P80294	61 aa		10.5	□□□□□ -0.73
CD44-222	ENST00000526025	IGKV2D-30	A0A075B6S6	120 aa		10.46	□□□□□ -0.73
CD44-222	ENST00000526025	IGKV2-30	P06310	120 aa		10.46	□□□□□ -0.73
CD44-222	ENST00000526025	IMUP	Q9GZP8	106 aa		10.46	□□□□□ -0.73
CD44-222	ENST00000526025	FAM236D	A0A1B0GTK5	79 aa		10.44	□□□□□ -0.74
CD44-222	ENST00000526025	FAM236C	P0DP71	79 aa		10.44	□□□□□ -0.74
CD44-222	ENST00000526025	UQCRQ	O14949	82 aa		10.43	□□□□□ -0.74
CD44-222	ENST00000526025	TRAV22	A0A0B4J277	110 aa		10.41	□□□□□ -0.74
CD44-222	ENST00000526025	MT-ATP8	P03928	68 aa		10.37	□□□□□ -0.75
CD44-222	ENST00000526025	ATOX1	O00244	68 aa		10.35	□□□□□ -0.75
CD44-222	ENST00000526025	OCR1	Q9BZK8	76 aa		10.35	□□□□□ -0.75
CD44-222	ENST00000526025	LOC101927531	A0A1B0GV80	90 aa		10.33	□□□□□ -0.76
CD44-222	ENST00000526025		M0R2T5	61 aa		10.31	□□□□□ -0.76
CD44-222	ENST00000526025		H0Y9P7	68 aa		10.29	□□□□□ -0.76
CD44-222	ENST00000526025	CYP4F30P	Q9H0H9	118 aa		10.29	□□□□□ -0.76
CD44-222	ENST00000526025	SCGB1A1	P11684	91 aa		10.27	□□□□□ -0.77
CD44-222	ENST00000526025	C5orf47	Q569G3	176 aa		10.24	□□□□□ -0.77
CD44-222	ENST00000526025	KRTAP10-6	P60371	365 aa	Predicted RBP	10.23	□□□□□ -0.77
CD44-222	ENST00000526025	C4orf26	Q17RF5	130 aa		10.23	□□□□□ -0.77
CD44-222	ENST00000526025	MP68	P56378	58 aa		10.22	□□□□□ -0.77
CD44-222	ENST00000526025	H1FX-AS1	Q4G0G2	97 aa		10.22	□□□□□ -0.77
CD44-222	ENST00000526025	LOR	P23490	312 aa	Predicted RBP	10.21	□□□□□ -0.77
CD44-222	ENST00000526025	FAM236A	A0A1B0GUQ0	79 aa		10.19	□□□□□ -0.78
CD44-222	ENST00000526025	FAM236B	A0A1B0GV22	79 aa		10.19	□□□□□ -0.78
CD44-222	ENST00000526025		H3BPC8	53 aa		10.19	□□□□□ -0.78
CD44-222	ENST00000526025	SMIM20	Q8N5G0	67 aa		10.19	□□□□□ -0.78
CD44-222	ENST00000526025	C1orf64	Q8NEQ6	169 aa		10.19	□□□□□ -0.78
CD44-222	ENST00000526025	LINC00208	Q96KT6	92 aa		10.16	□□□□□ -0.78
CD44-222	ENST00000526025	KRTAP3-1	Q9BYR8	98 aa		10.12	□□□□□ -0.79
CD44-222	ENST00000526025	TRAV7	A0A075B6U4	112 aa		10.11	□□□□□ -0.79
CD44-222	ENST00000526025	KLKP1	Q107X0	134 aa		10.02	□□□□□ -0.81
CD44-222	ENST00000526025	KRTAP9-8	Q9BYQ0	159 aa		10.01	□□□□□ -0.81
CD44-222	ENST00000526025		A8MUN3	132 aa		9.98	□□□□□ -0.81
CD44-222	ENST00000526025		S4R3F8	94 aa		9.97	□□□□□ -0.81
CD44-222	ENST00000526025	LCE2D	Q5TA82	110 aa	Predicted RBP	9.95	□□□□□ -0.82
CD44-222	ENST00000526025	SERP2	Q8N6R1	65 aa		9.94	□□□□□ -0.82
CD44-222	ENST00000526025	MT2A	P02795	61 aa		9.91	□□□□□ -0.82
CD44-222	ENST00000526025	KRTAP9-2	Q9BYQ4	174 aa		9.9	□□□□□ -0.82
CD44-222	ENST00000526025	LCA10	Q71F78	164 aa		9.89	□□□□□ -0.83
CD44-222	ENST00000526025	CSAG1	Q6PB30	78 aa		9.86	□□□□□ -0.83
CD44-222	ENST00000526025	MT1F	P04733	61 aa		9.83	□□□□□ -0.84
CD44-222	ENST00000526025	DMAC1	Q96GE9	116 aa		9.83	□□□□□ -0.84
CD44-222	ENST00000526025	KRTAP3-3	Q9BYR6	98 aa		9.81	□□□□□ -0.84
CD44-222	ENST00000526025	KRTAP10-10	P60014	251 aa		9.79	□□□□□ -0.84

Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms