RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 RGS21Q2M5E4 152 aa0.88□□□□□ -2.27
VPS13A-210ENST00000471439 STX12Q86Y82 276 aa0.88□□□□□ -2.27
VPS13A-210ENST00000471439 C8orf59Q8N0T1 100 aaPredicted RBP0.88□□□□□ -2.27
VPS13A-210ENST00000471439 BORCS7Q96B45 105 aa0.88□□□□□ -2.27
VPS13A-210ENST00000471439 TMEM141Q96I45 108 aa0.88□□□□□ -2.27
VPS13A-210ENST00000471439 A0A087WXM4 84 aa0.87□□□□□ -2.27
VPS13A-210ENST00000471439 TEX49A0A1B0GTD5 131 aa0.87□□□□□ -2.27
VPS13A-210ENST00000471439 F8WEM9 126 aa0.87□□□□□ -2.27
VPS13A-210ENST00000471439 SIX6O95475 246 aa0.87□□□□□ -2.27
VPS13A-210ENST00000471439 MT1AP04731 61 aa0.87□□□□□ -2.27
VPS13A-210ENST00000471439 COX17Q14061 63 aa0.87□□□□□ -2.27
VPS13A-210ENST00000471439 S4R3F8 94 aa0.87□□□□□ -2.27
VPS13A-210ENST00000471439 PDE6DO43924 150 aa0.86□□□□□ -2.27
VPS13A-210ENST00000471439 ATP5HO75947 161 aa0.86□□□□□ -2.27
VPS13A-210ENST00000471439 IFI27P40305 119 aaPredicted RBP0.86□□□□□ -2.27
VPS13A-210ENST00000471439 C9orf62Q8N4C0 152 aa0.86□□□□□ -2.27
VPS13A-210ENST00000471439 CNFNQ9BYD5 112 aa0.86□□□□□ -2.27
VPS13A-210ENST00000471439 TMEM167BQ9NRX6 74 aa0.86□□□□□ -2.27
VPS13A-210ENST00000471439 SMIM15Q7Z3B0 74 aa0.85□□□□□ -2.27
VPS13A-210ENST00000471439 C2orf88Q9BSF0 95 aa0.85□□□□□ -2.27
VPS13A-210ENST00000471439 LOC110117498A0A087WWA1 95 aa0.84□□□□□ -2.27
VPS13A-210ENST00000471439 SPINK8P0C7L1 97 aa0.84□□□□□ -2.27
VPS13A-210ENST00000471439 BAALC-AS2P0C853 105 aa0.84□□□□□ -2.27
VPS13A-210ENST00000471439 BAGE2Q86Y30 109 aa0.84□□□□□ -2.27
VPS13A-210ENST00000471439 SIGMAR1Q99720 223 aa0.84□□□□□ -2.27
VPS13A-210ENST00000471439 NHP2Q9NX24 153 aaKnown RBP0.84□□□□□ -2.27
VPS13A-210ENST00000471439 TNFSF18Q9UNG2 199 aa0.84□□□□□ -2.27
VPS13A-210ENST00000471439 TRAV12-1A0A0B4J245 112 aa0.83□□□□□ -2.28
VPS13A-210ENST00000471439 RPL35P42766 123 aaKnown RBP0.83□□□□□ -2.28
VPS13A-210ENST00000471439 LINC00158P58513 81 aa0.83□□□□□ -2.28
VPS13A-210ENST00000471439 SSBP1Q04837 148 aaKnown RBP0.83□□□□□ -2.28
VPS13A-210ENST00000471439 SFT2D1Q8WV19 159 aa0.83□□□□□ -2.28
VPS13A-210ENST00000471439 TPRKBQ9Y3C4 175 aa0.83□□□□□ -2.28
VPS13A-210ENST00000471439 TRAV23DV6A0A075B6W5 121 aa0.82□□□□□ -2.28
VPS13A-210ENST00000471439 FAM25AB3EWG3 89 aa0.82□□□□□ -2.28
VPS13A-210ENST00000471439 FAM25CB3EWG5 89 aa0.82□□□□□ -2.28
VPS13A-210ENST00000471439 FAM25GB3EWG6 89 aa0.82□□□□□ -2.28
VPS13A-210ENST00000471439 SEC11AP67812 179 aa0.81□□□□□ -2.28
VPS13A-210ENST00000471439 CLEC2BQ92478 149 aa0.81□□□□□ -2.28
VPS13A-210ENST00000471439 HIST1H2BLQ99880 126 aa0.81□□□□□ -2.28
VPS13A-210ENST00000471439 SMIM2Q9BVW6 85 aa0.81□□□□□ -2.28
VPS13A-210ENST00000471439 IGLV5-48A0A075B6I7 105 aa0.79□□□□□ -2.28
VPS13A-210ENST00000471439 CCDC160A6NGH7 325 aa0.79□□□□□ -2.28
VPS13A-210ENST00000471439 C3orf79P0CE67 100 aa0.79□□□□□ -2.28
VPS13A-210ENST00000471439 SMIM4Q8WVI0 70 aa0.79□□□□□ -2.28
VPS13A-210ENST00000471439 CDC42SE1Q9NRR8 79 aa0.79□□□□□ -2.28
VPS13A-210ENST00000471439 A0A0D9SG42 100 aa0.78□□□□□ -2.28
VPS13A-210ENST00000471439 PPP1R17O96001 155 aa0.78□□□□□ -2.28
VPS13A-210ENST00000471439 S100A6P06703 90 aa0.78□□□□□ -2.28
VPS13A-210ENST00000471439 Q5BKY6 102 aa0.78□□□□□ -2.28
VPS13A-210ENST00000471439 S100A7L2Q5SY68 101 aa0.78□□□□□ -2.28
VPS13A-210ENST00000471439 DSCR8Q96T75 97 aa0.78□□□□□ -2.28
VPS13A-210ENST00000471439 NXT2Q9NPJ8 142 aaKnown RBP0.78□□□□□ -2.28
VPS13A-210ENST00000471439 SS18L2Q9UHA2 77 aa0.78□□□□□ -2.28
VPS13A-210ENST00000471439 SMIM13P0DJ93 91 aa0.77□□□□□ -2.29
VPS13A-210ENST00000471439 VBP1P61758 197 aa0.77□□□□□ -2.29
VPS13A-210ENST00000471439 MRPS10P82664 201 aaKnown RBP0.77□□□□□ -2.29
VPS13A-210ENST00000471439 Q6JHZ5 121 aa0.77□□□□□ -2.29
VPS13A-210ENST00000471439 C20orf78Q9BR46 151 aa0.77□□□□□ -2.29
VPS13A-210ENST00000471439 TCEAL7Q9BRU2 100 aa0.77□□□□□ -2.29
VPS13A-210ENST00000471439 PSMG3Q9BT73 122 aaPredicted RBP0.77□□□□□ -2.29
VPS13A-210ENST00000471439 SMIM3Q9BZL3 60 aa0.77□□□□□ -2.29
VPS13A-210ENST00000471439 ZNF815PA8K554 130 aa0.76□□□□□ -2.29
VPS13A-210ENST00000471439 K7EQZ3 153 aa0.76□□□□□ -2.29
VPS13A-210ENST00000471439 INE1O15225 51 aa0.76□□□□□ -2.29
VPS13A-210ENST00000471439 LYRM7Q5U5X0 104 aa0.76□□□□□ -2.29
VPS13A-210ENST00000471439 LINC00472Q9H8W2 130 aa0.76□□□□□ -2.29
VPS13A-210ENST00000471439 IGIPA6NJ69 53 aa0.75□□□□□ -2.29
VPS13A-210ENST00000471439 TIMM17BO60830 172 aa0.74□□□□□ -2.29
VPS13A-210ENST00000471439 NDUFB6O95139 128 aa0.74□□□□□ -2.29
VPS13A-210ENST00000471439 ELOF1P60002 83 aaKnown RBP0.74□□□□□ -2.29
VPS13A-210ENST00000471439 LSM3P62310 102 aaKnown RBP0.74□□□□□ -2.29
VPS13A-210ENST00000471439 C14orf132Q9NPU4 83 aa0.74□□□□□ -2.29
VPS13A-210ENST00000471439 M0QZ58 72 aa0.73□□□□□ -2.29
VPS13A-210ENST00000471439 TAX1BP3O14907 124 aa0.73□□□□□ -2.29
VPS13A-210ENST00000471439 COX7BP24311 80 aa0.73□□□□□ -2.29
VPS13A-210ENST00000471439 HSPB11Q9Y547 144 aa0.73□□□□□ -2.29
VPS13A-210ENST00000471439 CTXND1A0A1B0GTU2 59 aa0.72□□□□□ -2.29
VPS13A-210ENST00000471439 H3BRM9 83 aa0.72□□□□□ -2.29
VPS13A-210ENST00000471439 DNAL4O96015 105 aa0.72□□□□□ -2.29
VPS13A-210ENST00000471439 FAUP35544 74 aaKnown RBP0.72□□□□□ -2.29
VPS13A-210ENST00000471439 ROMO1P60602 79 aa0.72□□□□□ -2.29
VPS13A-210ENST00000471439 OCIAD2Q56VL3 154 aa0.72□□□□□ -2.29
VPS13A-210ENST00000471439 A0A1W2PPM0 123 aa0.71□□□□□ -2.3
VPS13A-210ENST00000471439 RPL7L1Q6DKI1 246 aaKnown RBP0.71□□□□□ -2.3
VPS13A-210ENST00000471439 SFTA2Q6UW10 78 aa0.71□□□□□ -2.3
VPS13A-210ENST00000471439 TRAV13-2A0A0B4J235 113 aa0.7□□□□□ -2.3
VPS13A-210ENST00000471439 A0A1B0GUT8 65 aa0.7□□□□□ -2.3
VPS13A-210ENST00000471439 TMEM256-PLSCR3K7ERE1 68 aa0.7□□□□□ -2.3
VPS13A-210ENST00000471439 CKS2P33552 79 aa0.7□□□□□ -2.3
VPS13A-210ENST00000471439 MEIG1Q5JSS6 88 aa0.7□□□□□ -2.3
VPS13A-210ENST00000471439 TMEM254Q8TBM7 123 aa0.7□□□□□ -2.3
VPS13A-210ENST00000471439 BORCS7-ASMTA0A0B4J1R7 106 aa0.69□□□□□ -2.3
VPS13A-210ENST00000471439 SERF2P84101 59 aa0.69□□□□□ -2.3
VPS13A-210ENST00000471439 MAP1LC3B2A6NCE7 125 aa0.68□□□□□ -2.3
VPS13A-210ENST00000471439 H3BUT2 72 aa0.68□□□□□ -2.3
VPS13A-210ENST00000471439 NDUFC2O95298 119 aa0.68□□□□□ -2.3
VPS13A-210ENST00000471439 GNG4P50150 75 aa0.68□□□□□ -2.3
VPS13A-210ENST00000471439 TOMM5Q8N4H5 51 aa0.68□□□□□ -2.3
VPS13A-210ENST00000471439 MAP1LC3BQ9GZQ8 125 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms