RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 CTXND1A0A1B0GTU2 59 aa0.05□□□□□ -2.4
CPSF3-205ENST00000489629 BCE1O60756 84 aa0.05□□□□□ -2.4
CPSF3-205ENST00000489629 SNAPC5O75971 98 aa0.05□□□□□ -2.4
CPSF3-205ENST00000489629 C9orf153Q5TBE3 101 aa0.05□□□□□ -2.4
CPSF3-205ENST00000489629 MRPL54Q6P161 138 aaKnown RBP0.05□□□□□ -2.4
CPSF3-205ENST00000489629 C5orf38Q86SI9 138 aa0.05□□□□□ -2.4
CPSF3-205ENST00000489629 C2orf88Q9BSF0 95 aa0.05□□□□□ -2.4
CPSF3-205ENST00000489629 V9GYH0 126 aa0.05□□□□□ -2.4
CPSF3-205ENST00000489629 PLIN4Q96Q06 1357 aa0.05□□□□□ -2.4
CPSF3-205ENST00000489629 NAIPQ13075 1403 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 CD163L1Q9NR16 1453 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 IGLC7A0M8Q6 106 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 C10orf142B7Z368 130 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 CORTO00230 105 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 TNFP01375 233 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 MT1FP04733 61 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 SMIM6P0DI80 62 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 COMMD6Q7Z4G1 85 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 C8orf59Q8N0T1 100 aaPredicted RBP0.04□□□□□ -2.4
CPSF3-205ENST00000489629 CYP4F30PQ9H0H9 118 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 CEP162Q5TB80 1403 aa0.04□□□□□ -2.4
CPSF3-205ENST00000489629 PIGBOS1A0A0B4J2F0 54 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 F6UZH7 168 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 HMGN4O00479 90 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 SPINK1P00995 79 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 IFNGP01579 166 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 MT2AP02795 61 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 UBA52P62987 128 aaKnown RBP0.03□□□□□ -2.4
CPSF3-205ENST00000489629 MGST2Q99735 147 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 CNFNQ9BYD5 112 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 DYNLRB1Q9NP97 96 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 LINC01558Q9Y6Z2 57 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 CCNB3Q8WWL7 1395 aa0.03□□□□□ -2.4
CPSF3-205ENST00000489629 F8VRH5 84 aa0.02□□□□□ -2.41
CPSF3-205ENST00000489629 SSSCA1O60232 199 aa0.02□□□□□ -2.41
CPSF3-205ENST00000489629 SPINK8P0C7L1 97 aa0.02□□□□□ -2.41
CPSF3-205ENST00000489629 S100A1P23297 94 aa0.02□□□□□ -2.41
CPSF3-205ENST00000489629 TPPP2P59282 170 aa0.02□□□□□ -2.41
CPSF3-205ENST00000489629 FAM213BQ8TBF2 198 aa0.02□□□□□ -2.41
CPSF3-205ENST00000489629 SPRR2GQ9BYE4 73 aa0.02□□□□□ -2.41
CPSF3-205ENST00000489629 PRO0255Q9UI72 69 aa0.02□□□□□ -2.41
CPSF3-205ENST00000489629 CHKB-CPT1BH3BT56 60 aa0.01□□□□□ -2.41
CPSF3-205ENST00000489629 TMEM170BQ5T4T1 132 aa0.01□□□□□ -2.41
CPSF3-205ENST00000489629 BAGE2Q86Y30 109 aa0.01□□□□□ -2.41
CPSF3-205ENST00000489629 IER3IP1Q9Y5U9 82 aa0.01□□□□□ -2.41
CPSF3-205ENST00000489629 U3KQA8 63 aa0.01□□□□□ -2.41
CPSF3-205ENST00000489629 KTN1Q86UP2 1357 aaKnown RBP0.01□□□□□ -2.41
CPSF3-205ENST00000489629 A0A0D9SFI3 127 aa0□□□□□ -2.41
CPSF3-205ENST00000489629 UBE2L5PA0A1B0GUS4 154 aa0□□□□□ -2.41
CPSF3-205ENST00000489629 UQCR11O14957 56 aa0□□□□□ -2.41
CPSF3-205ENST00000489629 GNG4P50150 75 aa0□□□□□ -2.41
CPSF3-205ENST00000489629 PPP3R1P63098 170 aa0□□□□□ -2.41
CPSF3-205ENST00000489629 UBE2L3P68036 154 aaKnown RBP0□□□□□ -2.41
CPSF3-205ENST00000489629 KRTAP19-2Q3LHN2 52 aa0□□□□□ -2.41
CPSF3-205ENST00000489629 VPS8Q8N3P4 1428 aa0□□□□□ -2.41
CPSF3-205ENST00000489629 SMIM4Q8WVI0 70 aa0□□□□□ -2.41
CPSF3-205ENST00000489629 CDC42SE2Q9NRR3 84 aa0□□□□□ -2.41
CPSF3-205ENST00000489629 GNG8Q9UK08 70 aa0□□□□□ -2.41
CPSF3-205ENST00000489629 TRAV22A0A0B4J277 110 aa-0.01□□□□□ -2.41
CPSF3-205ENST00000489629 I3L2K1 104 aa-0.01□□□□□ -2.41
CPSF3-205ENST00000489629 GNG11P61952 73 aa-0.01□□□□□ -2.41
CPSF3-205ENST00000489629 KRTAP6-2Q3LI66 62 aa-0.01□□□□□ -2.41
CPSF3-205ENST00000489629 Q6JHZ5 121 aa-0.01□□□□□ -2.41
CPSF3-205ENST00000489629 SFTA2Q6UW10 78 aa-0.01□□□□□ -2.41
CPSF3-205ENST00000489629 MYOZ3Q8TDC0 251 aa-0.01□□□□□ -2.41
CPSF3-205ENST00000489629 FAM24AA6NFZ4 105 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 M0R3E3 92 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 SFT2D2O95562 160 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 IGLC1P0CG04 106 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 IFITM1P13164 125 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 TFF3Q07654 80 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 KRTAP19-8Q3LI54 63 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 KRTAP6-1Q3LI64 71 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 FDCSPQ8NFU4 85 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 SPRR4Q96PI1 79 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 APLNQ9ULZ1 77 aa-0.02□□□□□ -2.41
CPSF3-205ENST00000489629 ANKARQ7Z5J8 1434 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 KIF20BQ96Q89 1820 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 H0YAA0 97 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 H3BSH0 61 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 Q0VG73 95 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 FAM223AQ8IWN6 122 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 SVBPQ8N300 66 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 TMEM203Q969S6 136 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 TP53AIP1Q9HCN2 124 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 ARL2-SNX15V9GYD0 113 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 MYH4Q9Y623 1939 aa-0.03□□□□□ -2.41
CPSF3-205ENST00000489629 LOC285095A0A1B0GVY8 99 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 CFDP00746 253 aaPredicted RBP-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 APOC3P02656 99 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 MT1BP07438 61 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 UQCRHP07919 91 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 SNCAP37840 140 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 DCDP81605 110 aaKnown RBP-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 COX17Q14061 63 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 WFDC2Q14508 124 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 KRTAP19-7Q3SYF9 63 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 Q8IZM0 81 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 LCN9Q8WX39 176 aa-0.04□□□□□ -2.42
CPSF3-205ENST00000489629 FAM167A-AS1Q96KT0 104 aa-0.04□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms