RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 LINC00208Q96KT6 92 aa12.91□□□□□ -0.34
SHOX2-203ENST00000441443 RPL37AP61513 92 aaKnown RBP12.9□□□□□ -0.34
SHOX2-203ENST00000441443 LINC01556Q5JQF7 62 aa12.9□□□□□ -0.34
SHOX2-203ENST00000441443 CASC10Q5T4H9 136 aa12.89□□□□□ -0.35
SHOX2-203ENST00000441443 H3BNG1 76 aa12.89□□□□□ -0.35
SHOX2-203ENST00000441443 MP68P56378 58 aa12.88□□□□□ -0.35
SHOX2-203ENST00000441443 NDUFB1O75438 58 aa12.88□□□□□ -0.35
SHOX2-203ENST00000441443 IGFL1Q6UW32 110 aa12.88□□□□□ -0.35
SHOX2-203ENST00000441443 PLA2G2DQ9UNK4 145 aa12.88□□□□□ -0.35
SHOX2-203ENST00000441443 A0A087WSZ3 146 aa12.87□□□□□ -0.35
SHOX2-203ENST00000441443 MRPL55Q7Z7F7 128 aaKnown RBP12.87□□□□□ -0.35
SHOX2-203ENST00000441443 B9D2Q9BPU9 175 aa12.87□□□□□ -0.35
SHOX2-203ENST00000441443 TLX1NBP0CAT3 122 aa12.86□□□□□ -0.35
SHOX2-203ENST00000441443 Q5VV11 94 aa12.84□□□□□ -0.35
SHOX2-203ENST00000441443 TENM2Q9NT68 2774 aa12.84□□□□□ -0.35
SHOX2-203ENST00000441443 IGLV5-37A0A075B6J1 123 aa12.83□□□□□ -0.36
SHOX2-203ENST00000441443 CMYA5Q8N3K9 4069 aa12.82□□□□□ -0.36
SHOX2-203ENST00000441443 REG3GQ6UW15 175 aa12.81□□□□□ -0.36
SHOX2-203ENST00000441443 PRLHP81277 87 aa12.79□□□□□ -0.36
SHOX2-203ENST00000441443 H0Y9P7 68 aa12.79□□□□□ -0.36
SHOX2-203ENST00000441443 CHKB-CPT1BH3BT56 60 aa12.78□□□□□ -0.36
SHOX2-203ENST00000441443 Q8N9P0 234 aaPredicted RBP12.76□□□□□ -0.37
SHOX2-203ENST00000441443 KRTAP29-1A8MX34 341 aaPredicted RBP12.75□□□□□ -0.37
SHOX2-203ENST00000441443 SRRM2Q9UQ35 2752 aaKnown RBP12.75□□□□□ -0.37
SHOX2-203ENST00000441443 LINC00588Q9Y4M8 146 aa12.75□□□□□ -0.37
SHOX2-203ENST00000441443 CASC2Q6XLA1 102 aa12.74□□□□□ -0.37
SHOX2-203ENST00000441443 DNAH10OSP0CZ25 163 aa12.74□□□□□ -0.37
SHOX2-203ENST00000441443 PRR15LQ9BU68 103 aa12.74□□□□□ -0.37
SHOX2-203ENST00000441443 K7EIL1 84 aa12.71□□□□□ -0.37
SHOX2-203ENST00000441443 CNBPP62633 177 aaKnown RBP12.7□□□□□ -0.38
SHOX2-203ENST00000441443 COL7A1Q02388 2944 aa12.69□□□□□ -0.38
SHOX2-203ENST00000441443 C16orf90A8MZG2 172 aa12.69□□□□□ -0.38
SHOX2-203ENST00000441443 SPANXA2-OT1Q8N9U9 137 aa12.69□□□□□ -0.38
SHOX2-203ENST00000441443 SPTSSBQ8NFR3 76 aa12.69□□□□□ -0.38
SHOX2-203ENST00000441443 UBE2AP49459 152 aa12.68□□□□□ -0.38
SHOX2-203ENST00000441443 IGKV2-24A0A0C4DH68 120 aa12.67□□□□□ -0.38
SHOX2-203ENST00000441443 LIMD2Q9BT23 127 aa12.67□□□□□ -0.38
SHOX2-203ENST00000441443 IGLV8-61A0A075B6I0 122 aa12.63□□□□□ -0.39
SHOX2-203ENST00000441443 C9orf163Q8N9P6 203 aa12.63□□□□□ -0.39
SHOX2-203ENST00000441443 CSMD3Q7Z407 3707 aa12.62□□□□□ -0.39
SHOX2-203ENST00000441443 A0A096LNI7 61 aa12.62□□□□□ -0.39
SHOX2-203ENST00000441443 H3BPC8 53 aa12.61□□□□□ -0.39
SHOX2-203ENST00000441443 LCA10Q71F78 164 aa12.61□□□□□ -0.39
SHOX2-203ENST00000441443 A8MWP4 228 aa12.6□□□□□ -0.39
SHOX2-203ENST00000441443 COA5Q86WW8 74 aa12.6□□□□□ -0.39
SHOX2-203ENST00000441443 LYSTQ99698 3801 aa12.6□□□□□ -0.39
SHOX2-203ENST00000441443 DNAH3Q8TD57 4116 aa12.6□□□□□ -0.39
SHOX2-203ENST00000441443 A6NED7 52 aa12.59□□□□□ -0.39
SHOX2-203ENST00000441443 HUWE1Q7Z6Z7 4374 aaKnown RBP12.59□□□□□ -0.39
SHOX2-203ENST00000441443 H0Y9J4 135 aa12.59□□□□□ -0.39
SHOX2-203ENST00000441443 CD164Q04900 197 aa12.58□□□□□ -0.4
SHOX2-203ENST00000441443 PCOTHQ58A44 107 aa12.57□□□□□ -0.4
SHOX2-203ENST00000441443 LINC00472Q9H8W2 130 aa12.57□□□□□ -0.4
SHOX2-203ENST00000441443 DNAH1Q9P2D7 4330 aa12.56□□□□□ -0.4
SHOX2-203ENST00000441443 KRTAP11-1Q8IUC1 163 aa12.54□□□□□ -0.4
SHOX2-203ENST00000441443 Q75L30 129 aa12.53□□□□□ -0.4
SHOX2-203ENST00000441443 KTN1-AS1Q86SY8 53 aa12.53□□□□□ -0.4
SHOX2-203ENST00000441443 UBE2DNLQ8IWF7 75 aa12.52□□□□□ -0.4
SHOX2-203ENST00000441443 IGLV7-46A0A075B6I9 117 aa12.51□□□□□ -0.41
SHOX2-203ENST00000441443 MMP24-AS1A0A0U1RRL7 71 aa12.51□□□□□ -0.41
SHOX2-203ENST00000441443 KRTAP1-5Q9BYS1 174 aa12.5□□□□□ -0.41
SHOX2-203ENST00000441443 DNAH10Q8IVF4 4471 aa12.5□□□□□ -0.41
SHOX2-203ENST00000441443 PHF5AQ7RTV0 110 aaKnown RBP12.5□□□□□ -0.41
SHOX2-203ENST00000441443 LOC101927531A0A1B0GV80 90 aa12.49□□□□□ -0.41
SHOX2-203ENST00000441443 SPAG11AQ6PDA7 123 aa12.49□□□□□ -0.41
SHOX2-203ENST00000441443 ATP11AUNQ6ZP68 121 aa12.48□□□□□ -0.41
SHOX2-203ENST00000441443 CHTF8P0CG12 524 aa12.48□□□□□ -0.41
SHOX2-203ENST00000441443 MDFIQ99750 246 aa12.46□□□□□ -0.42
SHOX2-203ENST00000441443 RBM12B-AS1Q9P1G2 102 aa12.45□□□□□ -0.42
SHOX2-203ENST00000441443 A6NN06 94 aa12.41□□□□□ -0.42
SHOX2-203ENST00000441443 SPRR1BP22528 89 aa12.4□□□□□ -0.42
SHOX2-203ENST00000441443 CDC42SE1Q9NRR8 79 aa12.4□□□□□ -0.42
SHOX2-203ENST00000441443 NDUFS5O43920 106 aa12.37□□□□□ -0.43
SHOX2-203ENST00000441443 LINC01558Q9Y6Z2 57 aa12.35□□□□□ -0.43
SHOX2-203ENST00000441443 SPINK7P58062 85 aa12.34□□□□□ -0.43
SHOX2-203ENST00000441443 MOBPQ13875 183 aa12.34□□□□□ -0.43
SHOX2-203ENST00000441443 IGLV9-49A0A0B4J1Y8 123 aa12.33□□□□□ -0.44
SHOX2-203ENST00000441443 Q96NJ1 140 aa12.32□□□□□ -0.44
SHOX2-203ENST00000441443 DNAH9Q9NYC9 4486 aa12.32□□□□□ -0.44
SHOX2-203ENST00000441443 HRES1P13985 223 aa12.31□□□□□ -0.44
SHOX2-203ENST00000441443 APLNQ9ULZ1 77 aa12.31□□□□□ -0.44
SHOX2-203ENST00000441443 TP53AIP1Q9HCN2 124 aa12.3□□□□□ -0.44
SHOX2-203ENST00000441443 PLAC8Q9NZF1 115 aa12.3□□□□□ -0.44
SHOX2-203ENST00000441443 DNAH7Q8WXX0 4024 aa12.3□□□□□ -0.44
SHOX2-203ENST00000441443 C8orf17Q9NRJ1 99 aa12.3□□□□□ -0.44
SHOX2-203ENST00000441443 IGHV6-1A0A0B4J1U7 121 aa12.29□□□□□ -0.44
SHOX2-203ENST00000441443 ASB16-AS1Q495Z4 193 aa12.28□□□□□ -0.44
SHOX2-203ENST00000441443 Q6ZR54 194 aa12.27□□□□□ -0.44
SHOX2-203ENST00000441443 TGP01266 2768 aa12.27□□□□□ -0.45
SHOX2-203ENST00000441443 C7orf65Q6ZTY9 151 aa12.23□□□□□ -0.45
SHOX2-203ENST00000441443 PANO1I0J062 215 aa12.21□□□□□ -0.45
SHOX2-203ENST00000441443 PLECQ15149 4684 aaKnown RBP12.21□□□□□ -0.45
SHOX2-203ENST00000441443 A0A087X002 238 aa12.21□□□□□ -0.46
SHOX2-203ENST00000441443 NOTCH2NLQ7Z3S9 236 aa12.21□□□□□ -0.46
SHOX2-203ENST00000441443 PRR26Q8N8Z3 221 aa12.2□□□□□ -0.46
SHOX2-203ENST00000441443 A0A1B0GVX0 72 aa12.19□□□□□ -0.46
SHOX2-203ENST00000441443 NBDYA0A0U1RRE5 68 aa12.17□□□□□ -0.46
SHOX2-203ENST00000441443 KRTAP13-1Q8IUC0 172 aa12.17□□□□□ -0.46
SHOX2-203ENST00000441443 MRPL34Q9BQ48 92 aaKnown RBP12.17□□□□□ -0.46
SHOX2-203ENST00000441443 CDK2AP2O75956 126 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms