RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 JOSD1Q15040 202 aaPredicted RBP11.52□□□□□ -0.57
SHKBP1-221ENST00000599833 KRTAP13-2Q52LG2 175 aa11.52□□□□□ -0.57
SHKBP1-221ENST00000599833 MUSTN1Q8IVN3 82 aa11.52□□□□□ -0.57
SHKBP1-221ENST00000599833 TRAV23DV6A0A075B6W5 121 aa11.51□□□□□ -0.57
SHKBP1-221ENST00000599833 S100A7L2Q5SY68 101 aa11.51□□□□□ -0.57
SHKBP1-221ENST00000599833 Q9BRP9 147 aa11.5□□□□□ -0.57
SHKBP1-221ENST00000599833 HIGD2AQ9BW72 106 aa11.5□□□□□ -0.57
SHKBP1-221ENST00000599833 ETDCA0A1B0GVM5 59 aa11.49□□□□□ -0.57
SHKBP1-221ENST00000599833 COX8AP10176 69 aa11.49□□□□□ -0.57
SHKBP1-221ENST00000599833 UBR4Q5T4S7 5183 aa11.49□□□□□ -0.57
SHKBP1-221ENST00000599833 ERC2-IT1O76042 136 aa11.48□□□□□ -0.57
SHKBP1-221ENST00000599833 FAM229BQ4G0N7 80 aa11.48□□□□□ -0.57
SHKBP1-221ENST00000599833 Q6ZRX8 168 aa11.48□□□□□ -0.57
SHKBP1-221ENST00000599833 SPRR4Q96PI1 79 aa11.48□□□□□ -0.57
SHKBP1-221ENST00000599833 ZNF73O43830 326 aaPredicted RBP11.47□□□□□ -0.57
SHKBP1-221ENST00000599833 RPL13AP40429 203 aaKnown RBP11.47□□□□□ -0.57
SHKBP1-221ENST00000599833 TMA7Q9Y2S6 64 aaKnown RBP11.47□□□□□ -0.57
SHKBP1-221ENST00000599833 LINC00518Q8N0U6 118 aa11.46□□□□□ -0.57
SHKBP1-221ENST00000599833 DLEU1O43261 78 aa11.45□□□□□ -0.58
SHKBP1-221ENST00000599833 CRYGAP11844 174 aa11.45□□□□□ -0.58
SHKBP1-221ENST00000599833 PYY3Q5JQD4 70 aa11.45□□□□□ -0.58
SHKBP1-221ENST00000599833 PAM16Q9Y3D7 125 aa11.44□□□□□ -0.58
SHKBP1-221ENST00000599833 LPAP08519 4548 aa11.43□□□□□ -0.58
SHKBP1-221ENST00000599833 S100A12P80511 92 aa11.43□□□□□ -0.58
SHKBP1-221ENST00000599833 COPS9Q8WXC6 57 aa11.43□□□□□ -0.58
SHKBP1-221ENST00000599833 SPATA45Q537H7 98 aa11.42□□□□□ -0.58
SHKBP1-221ENST00000599833 OR13C6PQ8NH95 151 aa11.42□□□□□ -0.58
SHKBP1-221ENST00000599833 LINC00483Q53H64 154 aa11.41□□□□□ -0.58
SHKBP1-221ENST00000599833 C14orf144Q96I85 54 aa11.41□□□□□ -0.58
SHKBP1-221ENST00000599833 C3orf22Q8N5N4 141 aa11.4□□□□□ -0.58
SHKBP1-221ENST00000599833 C2orf91Q6ZV80 131 aa11.39□□□□□ -0.59
SHKBP1-221ENST00000599833 TYMSOSQ8TAI1 123 aa11.39□□□□□ -0.59
SHKBP1-221ENST00000599833 VAMP8Q9BV40 100 aa11.39□□□□□ -0.59
SHKBP1-221ENST00000599833 A4D1N5 150 aa11.37□□□□□ -0.59
SHKBP1-221ENST00000599833 ELOF1P60002 83 aaKnown RBP11.37□□□□□ -0.59
SHKBP1-221ENST00000599833 C6orf99Q4VX62 202 aa11.37□□□□□ -0.59
SHKBP1-221ENST00000599833 CBY1Q9Y3M2 126 aa11.37□□□□□ -0.59
SHKBP1-221ENST00000599833 ZNF706Q9Y5V0 76 aaPredicted RBP11.37□□□□□ -0.59
SHKBP1-221ENST00000599833 HIGD1BQ9P298 99 aa11.35□□□□□ -0.59
SHKBP1-221ENST00000599833 TRAV13-2A0A0B4J235 113 aa11.33□□□□□ -0.6
SHKBP1-221ENST00000599833 TRBV7-6A0A0J9YX20 115 aa11.33□□□□□ -0.6
SHKBP1-221ENST00000599833 A6NDN8 102 aa11.33□□□□□ -0.6
SHKBP1-221ENST00000599833 ST20-AS1Q8NBB2 130 aa11.33□□□□□ -0.6
SHKBP1-221ENST00000599833 COX7BP24311 80 aa11.32□□□□□ -0.6
SHKBP1-221ENST00000599833 SLC25A34Q6PIV7 304 aa11.32□□□□□ -0.6
SHKBP1-221ENST00000599833 SMIM11BQ8TCY0 68 aa11.32□□□□□ -0.6
SHKBP1-221ENST00000599833 GAGE2AQ6NT46 116 aa11.31□□□□□ -0.6
SHKBP1-221ENST00000599833 HIST1H4GQ99525 98 aa11.31□□□□□ -0.6
SHKBP1-221ENST00000599833 HINT1P49773 126 aaPredicted RBP11.29□□□□□ -0.6
SHKBP1-221ENST00000599833 DHRS4-AS1Q9P1J3 65 aa11.29□□□□□ -0.6
SHKBP1-221ENST00000599833 LINC00304Q8N9R0 145 aa11.28□□□□□ -0.6
SHKBP1-221ENST00000599833 C12orf57Q99622 126 aa11.28□□□□□ -0.6
SHKBP1-221ENST00000599833 A0A1B0GWB2 263 aa11.27□□□□□ -0.61
SHKBP1-221ENST00000599833 SPRR1BP22528 89 aa11.27□□□□□ -0.61
SHKBP1-221ENST00000599833 TSPAN13O95857 204 aa11.25□□□□□ -0.61
SHKBP1-221ENST00000599833 CFC1BP0CG36 223 aa11.25□□□□□ -0.61
SHKBP1-221ENST00000599833 CFC1P0CG37 223 aa11.25□□□□□ -0.61
SHKBP1-221ENST00000599833 LINC01547P58512 204 aaPredicted RBP11.24□□□□□ -0.61
SHKBP1-221ENST00000599833 RNF213Q63HN8 5207 aa11.24□□□□□ -0.61
SHKBP1-221ENST00000599833 TAL2Q16559 108 aa11.22□□□□□ -0.61
SHKBP1-221ENST00000599833 Q8NBF4 154 aa11.22□□□□□ -0.61
SHKBP1-221ENST00000599833 CEND1Q8N111 149 aa11.21□□□□□ -0.61
SHKBP1-221ENST00000599833 CTAG1AP78358 180 aa11.2□□□□□ -0.62
SHKBP1-221ENST00000599833 MOBPQ13875 183 aa11.2□□□□□ -0.62
SHKBP1-221ENST00000599833 IGLV5-48A0A075B6I7 105 aa11.19□□□□□ -0.62
SHKBP1-221ENST00000599833 IGLV9-49A0A0B4J1Y8 123 aa11.19□□□□□ -0.62
SHKBP1-221ENST00000599833 A0A0B4J2C4 111 aa11.19□□□□□ -0.62
SHKBP1-221ENST00000599833 FXYD2P54710 66 aa11.19□□□□□ -0.62
SHKBP1-221ENST00000599833 SMIM29Q86T20 159 aa11.18□□□□□ -0.62
SHKBP1-221ENST00000599833 LINC00575Q6W349 94 aa11.17□□□□□ -0.62
SHKBP1-221ENST00000599833 SSBP3-AS1Q7Z2R9 100 aa11.17□□□□□ -0.62
SHKBP1-221ENST00000599833 SPAG11AQ6PDA7 123 aa11.15□□□□□ -0.62
SHKBP1-221ENST00000599833 HSD52Q0P140 79 aa11.13□□□□□ -0.63
SHKBP1-221ENST00000599833 Q8N377 158 aa11.13□□□□□ -0.63
SHKBP1-221ENST00000599833 UQCR10Q9UDW1 63 aa11.13□□□□□ -0.63
SHKBP1-221ENST00000599833 TEX49A0A1B0GTD5 131 aa11.12□□□□□ -0.63
SHKBP1-221ENST00000599833 RETNLBQ9BQ08 111 aa11.12□□□□□ -0.63
SHKBP1-221ENST00000599833 PRR4Q16378 134 aa11.11□□□□□ -0.63
SHKBP1-221ENST00000599833 DEFB105AQ8NG35 78 aa11.11□□□□□ -0.63
SHKBP1-221ENST00000599833 RAB37Q96AX2 223 aa11.1□□□□□ -0.63
SHKBP1-221ENST00000599833 NHP2Q9NX24 153 aaKnown RBP11.1□□□□□ -0.63
SHKBP1-221ENST00000599833 SPINK1P00995 79 aa11.09□□□□□ -0.63
SHKBP1-221ENST00000599833 VAMP3Q15836 100 aa11.09□□□□□ -0.63
SHKBP1-221ENST00000599833 C9orf153Q5TBE3 101 aa11.09□□□□□ -0.63
SHKBP1-221ENST00000599833 MUC17Q685J3 4493 aa11.09□□□□□ -0.63
SHKBP1-221ENST00000599833 LOC105371267A0A1B0GV96 52 aa11.08□□□□□ -0.64
SHKBP1-221ENST00000599833 hADV29S1A0JD25 119 aa11.08□□□□□ -0.64
SHKBP1-221ENST00000599833 H7C2G1 150 aa11.08□□□□□ -0.64
SHKBP1-221ENST00000599833 RPS29P62273 56 aaKnown RBP11.08□□□□□ -0.64
SHKBP1-221ENST00000599833 Q1RN00 199 aa11.08□□□□□ -0.64
SHKBP1-221ENST00000599833 BVES-AS1Q5T3Y7 98 aa11.08□□□□□ -0.64
SHKBP1-221ENST00000599833 TMEM238LA0A1B0GVL6 79 aa11.07□□□□□ -0.64
SHKBP1-221ENST00000599833 A6NJY4 79 aa11.07□□□□□ -0.64
SHKBP1-221ENST00000599833 LAMTOR3Q9UHA4 124 aa11.07□□□□□ -0.64
SHKBP1-221ENST00000599833 PRO1854Q9UHT4 67 aa11.07□□□□□ -0.64
SHKBP1-221ENST00000599833 SMIM6P0DI80 62 aa11.06□□□□□ -0.64
SHKBP1-221ENST00000599833 Q6ZQY7 126 aa11.06□□□□□ -0.64
SHKBP1-221ENST00000599833 FAM218AQ96MZ4 157 aa11.06□□□□□ -0.64
SHKBP1-221ENST00000599833 C4orf48Q5BLP8 95 aa11.05□□□□□ -0.64
SHKBP1-221ENST00000599833 K7ERJ3 54 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms