RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 PFN2P35080 140 aa3.95□□□□□ -1.78
VPS39-209ENST00000568029 SOSTDC1Q6X4U4 206 aa3.95□□□□□ -1.78
VPS39-209ENST00000568029 MTURNQ8N3F0 131 aa3.95□□□□□ -1.78
VPS39-209ENST00000568029 C11orf45Q8TAV5 145 aa3.95□□□□□ -1.78
VPS39-209ENST00000568029 KLK12Q9UKR0 248 aa3.95□□□□□ -1.78
VPS39-209ENST00000568029 IGLV10-54A0A075B6I4 117 aa3.94□□□□□ -1.78
VPS39-209ENST00000568029 A0A0J9YWU9 116 aa3.94□□□□□ -1.78
VPS39-209ENST00000568029 H3BT86 120 aa3.94□□□□□ -1.78
VPS39-209ENST00000568029 LST1O00453 97 aa3.94□□□□□ -1.78
VPS39-209ENST00000568029 CCL18P55774 89 aa3.94□□□□□ -1.78
VPS39-209ENST00000568029 ANKRD29Q8N6D5 301 aa3.94□□□□□ -1.78
VPS39-209ENST00000568029 LINC01600Q96MT4 127 aa3.94□□□□□ -1.78
VPS39-209ENST00000568029 PRR34Q9NV39 138 aa3.94□□□□□ -1.78
VPS39-209ENST00000568029 DEFB131BA0A096LNP1 70 aa3.93□□□□□ -1.78
VPS39-209ENST00000568029 H0YGX0 51 aa3.93□□□□□ -1.78
VPS39-209ENST00000568029 RPL28P46779 137 aaKnown RBP3.93□□□□□ -1.78
VPS39-209ENST00000568029 KIAA0087Q14695 138 aa3.93□□□□□ -1.78
VPS39-209ENST00000568029 C2orf82Q6UX34 121 aa3.93□□□□□ -1.78
VPS39-209ENST00000568029 UBE2WQ96B02 151 aa3.93□□□□□ -1.78
VPS39-209ENST00000568029 TRAV10A0A0B4J240 114 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 NDUFC2O95298 119 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 TRACP01848 142 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 SPAG11BQ08648 103 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 ENHOQ6UWT2 76 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 Q6ZVQ6 151 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 C15orf53Q8NAA6 179 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 OR13C6PQ8NH95 151 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 CLEC2BQ92478 149 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 CARD19Q96LW7 228 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 SIGMAR1Q99720 223 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 RNF213Q63HN8 5207 aa3.92□□□□□ -1.78
VPS39-209ENST00000568029 DMBT1Q9UGM3 2413 aaPredicted RBP3.91□□□□□ -1.78
VPS39-209ENST00000568029 IGKV2-28A0A075B6P5 120 aa3.91□□□□□ -1.78
VPS39-209ENST00000568029 NDUFAF8A1L188 74 aa3.91□□□□□ -1.78
VPS39-209ENST00000568029 F8WDY8 70 aa3.91□□□□□ -1.78
VPS39-209ENST00000568029 SNCGO76070 127 aa3.91□□□□□ -1.78
VPS39-209ENST00000568029 IGKV2D-28P01615 120 aa3.91□□□□□ -1.78
VPS39-209ENST00000568029 ESRGQ1W209 222 aa3.91□□□□□ -1.78
VPS39-209ENST00000568029 LINC00337Q8N6G1 96 aa3.91□□□□□ -1.78
VPS39-209ENST00000568029 VPS13BQ7Z7G8 4022 aa3.91□□□□□ -1.78
VPS39-209ENST00000568029 GVQW2A0A096LPI5 108 aaPredicted RBP3.9□□□□□ -1.79
VPS39-209ENST00000568029 RTL8CO15255 209 aa3.9□□□□□ -1.79
VPS39-209ENST00000568029 BAALC-AS2P0C853 105 aa3.9□□□□□ -1.79
VPS39-209ENST00000568029 LINC01556Q5JQF7 62 aa3.9□□□□□ -1.79
VPS39-209ENST00000568029 WFDC10BQ8IUB3 73 aa3.9□□□□□ -1.79
VPS39-209ENST00000568029 SMIM11BQ8TCY0 68 aa3.9□□□□□ -1.79
VPS39-209ENST00000568029 TMEM126AQ9H061 195 aa3.9□□□□□ -1.79
VPS39-209ENST00000568029 DNAL4O96015 105 aa3.89□□□□□ -1.79
VPS39-209ENST00000568029 UNQ6190/PRO20217Q6UXQ8 127 aa3.89□□□□□ -1.79
VPS39-209ENST00000568029 A0A1B0GX51 115 aa3.88□□□□□ -1.79
VPS39-209ENST00000568029 NUPR2A6NF83 97 aa3.88□□□□□ -1.79
VPS39-209ENST00000568029 DNAH10OSP0CZ25 163 aa3.88□□□□□ -1.79
VPS39-209ENST00000568029 SCGB1A1P11684 91 aa3.88□□□□□ -1.79
VPS39-209ENST00000568029 C9orf116Q5BN46 136 aaPredicted RBP3.88□□□□□ -1.79
VPS39-209ENST00000568029 S100A7L2Q5SY68 101 aa3.88□□□□□ -1.79
VPS39-209ENST00000568029 C6orf223Q8N319 242 aa3.88□□□□□ -1.79
VPS39-209ENST00000568029 RMI2Q96E14 147 aa3.88□□□□□ -1.79
VPS39-209ENST00000568029 IGKV2D-24A0A075B6R9 120 aa3.87□□□□□ -1.79
VPS39-209ENST00000568029 TEX49A0A1B0GTD5 131 aa3.87□□□□□ -1.79
VPS39-209ENST00000568029 CAMK2N2Q96S95 79 aa3.87□□□□□ -1.79
VPS39-209ENST00000568029 EPM2AB3EWF7 344 aa3.86□□□□□ -1.79
VPS39-209ENST00000568029 ACYP1P07311 99 aa3.86□□□□□ -1.79
VPS39-209ENST00000568029 INAFM2P0DMQ5 153 aa3.86□□□□□ -1.79
VPS39-209ENST00000568029 C14orf177Q52M58 125 aa3.86□□□□□ -1.79
VPS39-209ENST00000568029 KRTAP26-1Q6PEX3 210 aa3.86□□□□□ -1.79
VPS39-209ENST00000568029 KRTAP7-1Q8IUC3 87 aa3.86□□□□□ -1.79
VPS39-209ENST00000568029 LINC00526Q96FQ7 95 aa3.86□□□□□ -1.79
VPS39-209ENST00000568029 H3BQ85 93 aa3.85□□□□□ -1.79
VPS39-209ENST00000568029 LECT2O14960 151 aa3.85□□□□□ -1.79
VPS39-209ENST00000568029 PRR3P79522 188 aaKnown RBP3.85□□□□□ -1.79
VPS39-209ENST00000568029 HIGD2BQ4VC39 106 aa3.85□□□□□ -1.79
VPS39-209ENST00000568029 C6orf48Q9UBA6 75 aa3.85□□□□□ -1.79
VPS39-209ENST00000568029 FAM240AA0A1B0GVK7 77 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 NDUFC2-KCTD14E9PQ53 114 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 M0R2N4 97 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 M0R378 163 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 NCR3O14931 201 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 SYCNQ0VAF6 134 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 LINC00336Q6ZUF6 198 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 C15orf56Q8N910 161 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 Q8NBF4 154 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 Q9HAA7 133 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 ORMDL1Q9P0S3 153 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 LINC00588Q9Y4M8 146 aa3.84□□□□□ -1.79
VPS39-209ENST00000568029 TRBV7-6A0A0J9YX20 115 aa3.83□□□□□ -1.8
VPS39-209ENST00000568029 KRTAP16-1A8MUX0 517 aa3.83□□□□□ -1.8
VPS39-209ENST00000568029 TMEM256-PLSCR3K7ERE1 68 aa3.83□□□□□ -1.8
VPS39-209ENST00000568029 IGLV6-57P01721 117 aa3.83□□□□□ -1.8
VPS39-209ENST00000568029 RPL18AQ02543 176 aaKnown RBP3.83□□□□□ -1.8
VPS39-209ENST00000568029 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.83□□□□□ -1.8
VPS39-209ENST00000568029 Q6ZRU5 148 aa3.83□□□□□ -1.8
VPS39-209ENST00000568029 Q8N814 137 aa3.83□□□□□ -1.8
VPS39-209ENST00000568029 LINC00167Q96N53 147 aa3.83□□□□□ -1.8
VPS39-209ENST00000568029 UPK3BQ9BT76 320 aa3.83□□□□□ -1.8
VPS39-209ENST00000568029 KRTAP10-7P60409 375 aaPredicted RBP3.82□□□□□ -1.8
VPS39-209ENST00000568029 C6orf99Q4VX62 202 aa3.82□□□□□ -1.8
VPS39-209ENST00000568029 LINC00575Q6W349 94 aa3.82□□□□□ -1.8
VPS39-209ENST00000568029 XAGE1AQ9HD64 81 aa3.82□□□□□ -1.8
VPS39-209ENST00000568029 TRAV23DV6A0A075B6W5 121 aa3.81□□□□□ -1.8
VPS39-209ENST00000568029 hADV29S1A0JD25 119 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms