RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 A0A1B0GUV1 79 aa9□□□□□ -0.97
SHMT2-226ENST00000556825 SPAG11AQ6PDA7 123 aa9□□□□□ -0.97
SHMT2-226ENST00000556825 A6NDX4 124 aa8.99□□□□□ -0.97
SHMT2-226ENST00000556825 DNAJC9-AS1A6NH13 148 aa8.99□□□□□ -0.97
SHMT2-226ENST00000556825 H0Y9P7 68 aa8.99□□□□□ -0.97
SHMT2-226ENST00000556825 IGLV7-46A0A075B6I9 117 aa8.97□□□□□ -0.97
SHMT2-226ENST00000556825 A0A0J9YWU9 116 aa8.97□□□□□ -0.97
SHMT2-226ENST00000556825 MSMBP08118 114 aa8.97□□□□□ -0.97
SHMT2-226ENST00000556825 CLPSL2Q6UWE3 100 aa8.97□□□□□ -0.97
SHMT2-226ENST00000556825 UNQ6190/PRO20217Q6UXQ8 127 aa8.97□□□□□ -0.97
SHMT2-226ENST00000556825 MAP6D1Q9H9H5 199 aa8.97□□□□□ -0.97
SHMT2-226ENST00000556825 UTP20O75691 2785 aaKnown RBP8.97□□□□□ -0.97
SHMT2-226ENST00000556825 B4DSR2 109 aa8.97□□□□□ -0.97
SHMT2-226ENST00000556825 LINC00476Q8WZB0 136 aa8.97□□□□□ -0.97
SHMT2-226ENST00000556825 NOP10Q9NPE3 64 aaKnown RBP8.97□□□□□ -0.97
SHMT2-226ENST00000556825 UNC79Q9P2D8 2635 aa8.97□□□□□ -0.97
SHMT2-226ENST00000556825 IGKV2D-24A0A075B6R9 120 aa8.96□□□□□ -0.97
SHMT2-226ENST00000556825 CRYBG3Q68DQ2 2970 aa8.96□□□□□ -0.98
SHMT2-226ENST00000556825 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.95□□□□□ -0.982e-7■■■■□ 25.4
SHMT2-226ENST00000556825 H3BUX3 64 aa8.95□□□□□ -0.98
SHMT2-226ENST00000556825 DEFB116Q30KQ4 102 aa8.95□□□□□ -0.98
SHMT2-226ENST00000556825 Q8NBF4 154 aa8.95□□□□□ -0.98
SHMT2-226ENST00000556825 ANKRD17O75179 2603 aaKnown RBP8.94□□□□□ -0.98
SHMT2-226ENST00000556825 Q8N377 158 aa8.94□□□□□ -0.98
SHMT2-226ENST00000556825 CHCHD10Q8WYQ3 142 aaPredicted RBP8.94□□□□□ -0.98
SHMT2-226ENST00000556825 SPRR4Q96PI1 79 aa8.94□□□□□ -0.98
SHMT2-226ENST00000556825 RETNLBQ9BQ08 111 aa8.94□□□□□ -0.98
SHMT2-226ENST00000556825 H0Y9J4 135 aa8.93□□□□□ -0.98
SHMT2-226ENST00000556825 WFDC13Q8IUB5 93 aa8.93□□□□□ -0.98
SHMT2-226ENST00000556825 UBR5O95071 2799 aaPredicted RBP8.93□□□□□ -0.98
SHMT2-226ENST00000556825 LRRK2Q5S007 2527 aa8.92□□□□□ -0.98
SHMT2-226ENST00000556825 MAP1AP78559 2803 aaPredicted RBP8.92□□□□□ -0.98
SHMT2-226ENST00000556825 DEFB112Q30KQ8 113 aa8.92□□□□□ -0.98
SHMT2-226ENST00000556825 RTL8CO15255 209 aa8.92□□□□□ -0.98
SHMT2-226ENST00000556825 WNK1Q9H4A3 2382 aa8.92□□□□□ -0.98
SHMT2-226ENST00000556825 CSPG4Q6UVK1 2322 aa8.91□□□□□ -0.98
SHMT2-226ENST00000556825 C10orf99Q6UWK7 81 aa8.91□□□□□ -0.98
SHMT2-226ENST00000556825 C1orf137Q5JT78 98 aa8.9□□□□□ -0.98
SHMT2-226ENST00000556825 DEFB105AQ8NG35 78 aa8.9□□□□□ -0.98
SHMT2-226ENST00000556825 CELSR2Q9HCU4 2923 aa8.9□□□□□ -0.98
SHMT2-226ENST00000556825 CSMD2Q7Z408 3487 aa8.9□□□□□ -0.98
SHMT2-226ENST00000556825 OXLD1Q5BKU9 147 aa8.9□□□□□ -0.98
SHMT2-226ENST00000556825 TENM4Q6N022 2769 aa8.9□□□□□ -0.99
SHMT2-226ENST00000556825 XAGE1AQ9HD64 81 aa8.89□□□□□ -0.99
SHMT2-226ENST00000556825 ZNF706Q9Y5V0 76 aaPredicted RBP8.89□□□□□ -0.99
SHMT2-226ENST00000556825 GVQW2A0A096LPI5 108 aaPredicted RBP8.89□□□□□ -0.99
SHMT2-226ENST00000556825 KRTAP29-1A8MX34 341 aaPredicted RBP8.89□□□□□ -0.99
SHMT2-226ENST00000556825 KRTAP10-9P60411 292 aa8.89□□□□□ -0.99
SHMT2-226ENST00000556825 WFDC10BQ8IUB3 73 aa8.88□□□□□ -0.99
SHMT2-226ENST00000556825 HECTD1Q9ULT8 2610 aa8.88□□□□□ -0.99
SHMT2-226ENST00000556825 CENPEQ02224 2701 aa8.87□□□□□ -0.99
SHMT2-226ENST00000556825 IGLV10-54A0A075B6I4 117 aa8.87□□□□□ -0.99
SHMT2-226ENST00000556825 TNP2Q05952 138 aa8.87□□□□□ -0.99
SHMT2-226ENST00000556825 MAPK1IP1LQ8NDC0 245 aa8.87□□□□□ -0.99
SHMT2-226ENST00000556825 USP9YO00507 2555 aaPredicted RBP8.87□□□□□ -0.99
SHMT2-226ENST00000556825 DEFB113Q30KQ7 82 aa8.86□□□□□ -0.99
SHMT2-226ENST00000556825 POLQO75417 2590 aa8.86□□□□□ -0.99
SHMT2-226ENST00000556825 IGLV1-51P01701 117 aa8.86□□□□□ -0.99
SHMT2-226ENST00000556825 PTPN13Q12923 2485 aa8.86□□□□□ -0.99
SHMT2-226ENST00000556825 IGLV1-50A0A075B6I6 118 aa8.85□□□□□ -0.99
SHMT2-226ENST00000556825 C16orf74Q96GX8 76 aa8.85□□□□□ -0.99
SHMT2-226ENST00000556825 ZNF702PQ9H963 129 aa8.85□□□□□ -0.99
SHMT2-226ENST00000556825 C7orf33Q8WU49 177 aa8.84□□□□□ -0.99
SHMT2-226ENST00000556825 FBN2P35556 2912 aa8.84□□□□□ -0.99
SHMT2-226ENST00000556825 REG3AQ06141 175 aa8.83□□□□□ -1
SHMT2-226ENST00000556825 C6orf48Q9UBA6 75 aa8.82□□□□□ -1
SHMT2-226ENST00000556825 ABCA12Q86UK0 2595 aa8.82□□□□□ -1
SHMT2-226ENST00000556825 SLURP1P55000 103 aa8.82□□□□□ -1
SHMT2-226ENST00000556825 CSAG1Q6PB30 78 aa8.82□□□□□ -1
SHMT2-226ENST00000556825 C2CD3Q4AC94 2353 aa8.82□□□□□ -1
SHMT2-226ENST00000556825 IGLV5-37A0A075B6J1 123 aa8.8□□□□□ -1
SHMT2-226ENST00000556825 Q6ZR54 194 aa8.8□□□□□ -1
SHMT2-226ENST00000556825 ANGP03950 147 aaKnown RBP8.79□□□□□ -1
SHMT2-226ENST00000556825 GYPEP15421 78 aa8.78□□□□□ -1
SHMT2-226ENST00000556825 ZANQ9Y493 2812 aa8.78□□□□□ -1
SHMT2-226ENST00000556825 Q6YL49 198 aa8.77□□□□□ -1.01
SHMT2-226ENST00000556825 CSNK1G2-AS1Q8NCQ2 148 aa8.77□□□□□ -1.01
SHMT2-226ENST00000556825 HRES1P13985 223 aa8.77□□□□□ -1.01
SHMT2-226ENST00000556825 APCP25054 2843 aa8.76□□□□□ -1.01
SHMT2-226ENST00000556825 KRTAP1-3Q8IUG1 177 aa8.76□□□□□ -1.01
SHMT2-226ENST00000556825 TEX15Q9BXT5 2789 aa8.76□□□□□ -1.01
SHMT2-226ENST00000556825 C1orf134Q5TEV5 83 aa8.76□□□□□ -1.01
SHMT2-226ENST00000556825 DHRS4-AS1Q9P1J3 65 aa8.76□□□□□ -1.01
SHMT2-226ENST00000556825 MYO9AB2RTY4 2548 aa8.75□□□□□ -1.01
SHMT2-226ENST00000556825 CREBBPQ92793 2442 aa8.75□□□□□ -1.01
SHMT2-226ENST00000556825 DEFB136Q30KP8 78 aa8.74□□□□□ -1.01
SHMT2-226ENST00000556825 PCOTHQ58A44 107 aa8.74□□□□□ -1.01
SHMT2-226ENST00000556825 IGHV6-1A0A0B4J1U7 121 aa8.73□□□□□ -1.01
SHMT2-226ENST00000556825 SPATA8Q6RVD6 105 aa8.73□□□□□ -1.01
SHMT2-226ENST00000556825 GIG44P09565 113 aaPredicted RBP8.72□□□□□ -1.01
SHMT2-226ENST00000556825 NBPF19A0A087WUL8 3843 aa8.72□□□□□ -1.01
SHMT2-226ENST00000556825 RPL37AP61513 92 aaKnown RBP8.72□□□□□ -1.01
SHMT2-226ENST00000556825 A0A096LPF7 62 aa8.7□□□□□ -1.02
SHMT2-226ENST00000556825 KRTAP21-3Q3LHN1 58 aa8.7□□□□□ -1.02
SHMT2-226ENST00000556825 MXRA5Q9NR99 2828 aa8.7□□□□□ -1.02
SHMT2-226ENST00000556825 ITPR3Q14573 2671 aa8.69□□□□□ -1.02
SHMT2-226ENST00000556825 TEP1Q99973 2627 aaKnown RBP8.69□□□□□ -1.02
SHMT2-226ENST00000556825 EGFEM1PQ0D2K5 195 aa8.68□□□□□ -1.02
SHMT2-226ENST00000556825 TLN2Q9Y4G6 2542 aa8.68□□□□□ -1.02
SHMT2-226ENST00000556825 Q6ZRX8 168 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms