RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	LINC01545	Q5VT33	79 aa		0.82	□□□□□ -2.28
PRKDC-208	ENST00000536710	PSMG3	Q9BT73	122 aa	Predicted RBP	0.82	□□□□□ -2.28
PRKDC-208	ENST00000536710	VPS13B	Q7Z7G8	4022 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	DNAH11	Q96DT5	4516 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	HERC1	Q15751	4861 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	TMEM14DP	A8MWL7	114 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710		G3V318	75 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710		H3BSH0	61 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710		H3BUA1	57 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	PRH1	P02810	166 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	SAA2	P0DJI9	122 aa	Predicted RBP	0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	ELOF1	P60002	83 aa	Known RBP	0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	CCDC58	Q4VC31	144 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	ACBD7	Q8N6N7	88 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	VSTM2A	Q8TAG5	236 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	LEAP2	Q969E1	77 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	NDUFA12	Q9UI09	145 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	GNG8	Q9UK08	70 aa		0.81	□□□□□ -2.28
PRKDC-208	ENST00000536710	DYNC1H1	Q14204	4646 aa	Known RBP	0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	LOC100130705	A0A1B0GUX0	176 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	GNGT2	O14610	69 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	NCR2	O95944	276 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	GNGT1	P63211	74 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	DEFA5	Q01523	94 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	INSL4	Q14641	139 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	RPL39P5	Q59GN2	51 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	DEFB121	Q5J5C9	76 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	C6orf201	Q7Z4U5	140 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	ARL11	Q969Q4	196 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	FAM107B	Q9H098	131 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	AP4S1	Q9Y587	144 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	APOB	P04114	4563 aa	Known RBP	0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	MYCBP2	O75592	4640 aa		0.8	□□□□□ -2.28
PRKDC-208	ENST00000536710	DNAH5	Q8TE73	4624 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	SRRM2	Q9UQ35	2752 aa	Known RBP	0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	IGLC7	A0M8Q6	106 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	RBAKDN	A6NC62	111 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	EFCAB10	A6NFE3	127 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	FAM223B	A6NKX1	122 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	MCRIP1	C9JLW8	97 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710		F2Z2F3	143 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	HIST1H1D	P16402	221 aa	Known RBP	0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	CBLN1	P23435	193 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	DEFB114	Q30KQ6	69 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	FAM223A	Q8IWN6	122 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	TTC9C	Q8N5M4	171 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	TMEM167A	Q8TBQ9	72 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	USMG5	Q96IX5	58 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	APLN	Q9ULZ1	77 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	LRP1B	Q9NZR2	4599 aa		0.79	□□□□□ -2.28
PRKDC-208	ENST00000536710	PKHD1L1	Q86WI1	4243 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	FAT3	Q8TDW7	4589 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	TRBV7-1	A0A0A6YYK4	115 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	TRAV1-2	A0A0B4J238	106 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	TRAV12-3	A0A0B4J271	114 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710		A8MTW9	85 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710		K7EIM0	57 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	TPPP2	P59282	170 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	NPC2	P61916	151 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	RPS25	P62851	125 aa	Known RBP	0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	PPP3R1	P63098	170 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	WT1-AS	Q06250	92 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	SPCS2	Q15005	226 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	SPANXN1	Q5VSR9	72 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	C8orf59	Q8N0T1	100 aa	Predicted RBP	0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	ARHGAP5-AS1	Q96IT6	56 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	UBR4	Q5T4S7	5183 aa		0.78	□□□□□ -2.28
PRKDC-208	ENST00000536710	HMCN2	Q8NDA2	5059 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710		I3L2K1	104 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	NDUFA4	O00483	81 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	APELA	P0DMC3	54 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	PLGLA	Q15195	96 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	DEFB135	Q30KP9	77 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	RPL7L1	Q6DKI1	246 aa	Known RBP	0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	ZNF818P	Q6ZRF7	136 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	TMEM203	Q969S6	136 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	PFDN5	Q99471	154 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	S100A13	Q99584	98 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	NDUFA4L2	Q9NRX3	87 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	ABRACL	Q9P1F3	81 aa		0.77	□□□□□ -2.29
PRKDC-208	ENST00000536710	RNF213	Q63HN8	5207 aa		0.76	□□□□□ -2.29
PRKDC-208	ENST00000536710	IGLC1	P0CG04	106 aa		0.76	□□□□□ -2.29
PRKDC-208	ENST00000536710	RRAS2	P62070	204 aa	Predicted RBP	0.76	□□□□□ -2.29
PRKDC-208	ENST00000536710	PRCD	Q00LT1	54 aa		0.76	□□□□□ -2.29
PRKDC-208	ENST00000536710		Q6ZUT4	128 aa		0.76	□□□□□ -2.29
PRKDC-208	ENST00000536710	C20orf197	Q8N268	126 aa		0.76	□□□□□ -2.29
PRKDC-208	ENST00000536710	LSM10	Q969L4	123 aa	Known RBP	0.76	□□□□□ -2.29
PRKDC-208	ENST00000536710	RHPN1-AS1	Q9BWJ2	59 aa		0.76	□□□□□ -2.29
PRKDC-208	ENST00000536710	FXYD6	Q9H0Q3	95 aa		0.76	□□□□□ -2.29
PRKDC-208	ENST00000536710	FAT1	Q14517	4588 aa		0.75	□□□□□ -2.29
PRKDC-208	ENST00000536710	LRP1	Q07954	4544 aa	Known RBP	0.75	□□□□□ -2.29
PRKDC-208	ENST00000536710	DNAH8	Q96JB1	4490 aa		0.75	□□□□□ -2.29
PRKDC-208	ENST00000536710	PDCD5	O14737	125 aa		0.75	□□□□□ -2.29
PRKDC-208	ENST00000536710	DEFB4A	O15263	64 aa		0.75	□□□□□ -2.29
PRKDC-208	ENST00000536710	PITX3	O75364	302 aa		0.75	□□□□□ -2.29
PRKDC-208	ENST00000536710	TRAPPC2	P0DI81	140 aa		0.75	□□□□□ -2.29
PRKDC-208	ENST00000536710	TRAPPC2B	P0DI82	140 aa		0.75	□□□□□ -2.29
PRKDC-208	ENST00000536710	DEFB131A	P59861	70 aa		0.75	□□□□□ -2.29
PRKDC-208	ENST00000536710	SSBP1	Q04837	148 aa	Known RBP	0.75	□□□□□ -2.29

Retrieved 100 of 20,778 RNA–protein pairs in 109.3 ms