RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TNFP01375 233 aa0.07□□□□□ -2.4
CD44-238ENST00000534296 PIGYQ3MUY2 71 aa0.07□□□□□ -2.4
CD44-238ENST00000534296 MGST2Q99735 147 aa0.07□□□□□ -2.4
CD44-238ENST00000534296 USF3Q68DE3 2245 aa0.07□□□□□ -2.4
CD44-238ENST00000534296 ABCC2Q92887 1545 aa0.07□□□□□ -2.4
CD44-238ENST00000534296 PZPP20742 1482 aa0.06□□□□□ -2.4
CD44-238ENST00000534296 F8VRH5 84 aa0.06□□□□□ -2.4
CD44-238ENST00000534296 SSSCA1O60232 199 aa0.06□□□□□ -2.4
CD44-238ENST00000534296 FGF7P21781 194 aa0.06□□□□□ -2.4
CD44-238ENST00000534296 CATR1Q13166 79 aa0.06□□□□□ -2.4
CD44-238ENST00000534296 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.06□□□□□ -2.4
CD44-238ENST00000534296 FAIMQ9NVQ4 179 aa0.06□□□□□ -2.4
CD44-238ENST00000534296 ZFYVE16Q7Z3T8 1539 aa0.06□□□□□ -2.4
CD44-238ENST00000534296 BTAF1O14981 1849 aa0.06□□□□□ -2.4
CD44-238ENST00000534296 AKAIN1P0CW23 69 aa0.05□□□□□ -2.4
CD44-238ENST00000534296 Q6JHZ5 121 aa0.05□□□□□ -2.4
CD44-238ENST00000534296 TP53AIP1Q9HCN2 124 aa0.05□□□□□ -2.4
CD44-238ENST00000534296 UQCR10Q9UDW1 63 aa0.05□□□□□ -2.4
CD44-238ENST00000534296 EIF4G3O43432 1585 aaKnown RBP0.05□□□□□ -2.4
CD44-238ENST00000534296 CLTCL1P53675 1640 aa0.05□□□□□ -2.4
CD44-238ENST00000534296 ROCK2O75116 1388 aaKnown RBP0.05□□□□□ -2.4
CD44-238ENST00000534296 KTN1Q86UP2 1357 aaKnown RBP0.05□□□□□ -2.4
CD44-238ENST00000534296 CPSF1Q10570 1443 aaKnown RBP0.04□□□□□ -2.4
CD44-238ENST00000534296 NCOA3Q9Y6Q9 1424 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 LRRIQ1Q96JM4 1722 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 TOGARAM1Q9Y4F4 1720 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 CCDC88BA6NC98 1476 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 ATP10BO94823 1461 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 ATP7BP35670 1465 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 EFCAB5A4FU69 1503 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 DIP2CQ9Y2E4 1556 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 GOLGA4Q13439 2230 aaKnown RBP0.04□□□□□ -2.4
CD44-238ENST00000534296 TRBV7-3A0A075B6L6 115 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 EFCAB10A6NFE3 127 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 BCE1O60756 84 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 AMELXQ99217 191 aa0.04□□□□□ -2.4
CD44-238ENST00000534296 CCDC18Q5T9S5 1454 aa0.03□□□□□ -2.4
CD44-238ENST00000534296 NFAT5O94916 1531 aa0.03□□□□□ -2.4
CD44-238ENST00000534296 EIF2AK4Q9P2K8 1649 aaKnown RBP0.03□□□□□ -2.4
CD44-238ENST00000534296 A0A1B0GV90 55 aa0.03□□□□□ -2.4
CD44-238ENST00000534296 SNAPC5O75971 98 aa0.03□□□□□ -2.4
CD44-238ENST00000534296 NDUFA4L2Q9NRX3 87 aa0.03□□□□□ -2.4
CD44-238ENST00000534296 TIAM2Q8IVF5 1701 aa0.03□□□□□ -2.4
CD44-238ENST00000534296 DNAJC13O75165 2243 aa0.03□□□□□ -2.4
CD44-238ENST00000534296 ABCC3O15438 1527 aa0.03□□□□□ -2.41
CD44-238ENST00000534296 MROH2BQ7Z745 1585 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 PARP4Q9UKK3 1724 aaKnown RBP0.02□□□□□ -2.41
CD44-238ENST00000534296 TRBV6-1A0A0K0K1D8 114 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 FAM24AA6NFZ4 105 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 DLEU1O43261 78 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 WHAMMP3Q1A5X7 153 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 MRPL54Q6P161 138 aaKnown RBP0.02□□□□□ -2.41
CD44-238ENST00000534296 COMMD6Q7Z4G1 85 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 PP6455Q8WZ26 134 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 SPANXDQ9BXN6 97 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 LINC00472Q9H8W2 130 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 SAMD9LQ8IVG5 1584 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 SCN7AQ01118 1682 aa0.02□□□□□ -2.41
CD44-238ENST00000534296 QSER1Q2KHR3 1735 aa0.01□□□□□ -2.41
CD44-238ENST00000534296 IGLC7A0M8Q6 106 aa0.01□□□□□ -2.41
CD44-238ENST00000534296 OOSP1A8MZH6 123 aa0.01□□□□□ -2.41
CD44-238ENST00000534296 HMGN4O00479 90 aa0.01□□□□□ -2.41
CD44-238ENST00000534296 SFT2D2O95562 160 aa0.01□□□□□ -2.41
CD44-238ENST00000534296 MGPP08493 103 aa0.01□□□□□ -2.41
CD44-238ENST00000534296 RPL13AP3Q6NVV1 102 aa0.01□□□□□ -2.41
CD44-238ENST00000534296 C5orf38Q86SI9 138 aa0.01□□□□□ -2.41
CD44-238ENST00000534296 MYO3AQ8NEV4 1616 aa0.01□□□□□ -2.41
CD44-238ENST00000534296 PTPN23Q9H3S7 1636 aa0.01□□□□□ -2.41
CD44-238ENST00000534296 F6UZH7 168 aa0□□□□□ -2.41
CD44-238ENST00000534296 CHKB-CPT1BH3BT56 60 aa0□□□□□ -2.41
CD44-238ENST00000534296 SPRR1AP35321 89 aa0□□□□□ -2.41
CD44-238ENST00000534296 UBA52P62987 128 aaKnown RBP0□□□□□ -2.41
CD44-238ENST00000534296 CLTCQ00610 1675 aaKnown RBP0□□□□□ -2.41
CD44-238ENST00000534296 SCRIBQ14160 1630 aa0□□□□□ -2.41
CD44-238ENST00000534296 C9orf153Q5TBE3 101 aa0□□□□□ -2.41
CD44-238ENST00000534296 RICTORQ6R327 1708 aa0□□□□□ -2.41
CD44-238ENST00000534296 ABCA5Q8WWZ7 1642 aa0□□□□□ -2.41
CD44-238ENST00000534296 TSLPQ969D9 159 aa0□□□□□ -2.41
CD44-238ENST00000534296 LINC01558Q9Y6Z2 57 aa0□□□□□ -2.41
CD44-238ENST00000534296 DEPDC5O75140 1603 aa-0.01□□□□□ -2.41
CD44-238ENST00000534296 HFM1A2PYH4 1435 aa-0.01□□□□□ -2.41
CD44-238ENST00000534296 UBE2L5PA0A1B0GUS4 154 aa-0.01□□□□□ -2.41
CD44-238ENST00000534296 ATP5EP56381 51 aaPredicted RBP-0.01□□□□□ -2.41
CD44-238ENST00000534296 UBE2L3P68036 154 aaKnown RBP-0.01□□□□□ -2.41
CD44-238ENST00000534296 SARNPP82979 210 aaKnown RBP-0.01□□□□□ -2.41
CD44-238ENST00000534296 FDCSPQ8NFU4 85 aa-0.01□□□□□ -2.41
CD44-238ENST00000534296 LINC00474Q9P2X8 69 aa-0.01□□□□□ -2.41
CD44-238ENST00000534296 XRN1Q8IZH2 1706 aaKnown RBP-0.01□□□□□ -2.41
CD44-238ENST00000534296 KIF1AQ12756 1690 aa-0.02□□□□□ -2.41
CD44-238ENST00000534296 LINC00587B1AMM8 73 aa-0.02□□□□□ -2.41
CD44-238ENST00000534296 GNG11P61952 73 aa-0.02□□□□□ -2.41
CD44-238ENST00000534296 MT1HP80294 61 aa-0.02□□□□□ -2.41
CD44-238ENST00000534296 SVBPQ8N300 66 aa-0.02□□□□□ -2.41
CD44-238ENST00000534296 C2orf88Q9BSF0 95 aa-0.02□□□□□ -2.41
CD44-238ENST00000534296 NXT2Q9NPJ8 142 aaKnown RBP-0.02□□□□□ -2.41
CD44-238ENST00000534296 MROH1Q8NDA8 1641 aa-0.02□□□□□ -2.41
CD44-238ENST00000534296 POLA1P09884 1462 aaPredicted RBP-0.03□□□□□ -2.41
CD44-238ENST00000534296 CLIP1P30622 1438 aa-0.03□□□□□ -2.41
CD44-238ENST00000534296 NRAPQ86VF7 1730 aa-0.03□□□□□ -2.41
CD44-238ENST00000534296 LOC730098B7Z3J9 87 aa-0.03□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms