RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 COX6CP09669 75 aa9.33□□□□□ -0.92
CPSF1-208ENST00000532560 SFTA2Q6UW10 78 aa9.33□□□□□ -0.92
CPSF1-208ENST00000532560 TCL1BO95988 128 aa9.32□□□□□ -0.92
CPSF1-208ENST00000532560 ATXN8Q156A1 80 aa9.32□□□□□ -0.92
CPSF1-208ENST00000532560 ETDBQ3ZM63 59 aa9.32□□□□□ -0.92
CPSF1-208ENST00000532560 XAGE1AQ9HD64 81 aa9.32□□□□□ -0.92
CPSF1-208ENST00000532560 DMBT1Q9UGM3 2413 aaPredicted RBP9.32□□□□□ -0.92
CPSF1-208ENST00000532560 SCGB1A1P11684 91 aa9.31□□□□□ -0.92
CPSF1-208ENST00000532560 TEN1Q86WV5 123 aa9.31□□□□□ -0.92
CPSF1-208ENST00000532560 OXTP01178 125 aa9.3□□□□□ -0.92
CPSF1-208ENST00000532560 Q1RN00 199 aa9.3□□□□□ -0.92
CPSF1-208ENST00000532560 PPDPFLQ8WWR9 84 aa9.3□□□□□ -0.92
CPSF1-208ENST00000532560 ZNF625Q96I27 306 aaPredicted RBP9.3□□□□□ -0.92
CPSF1-208ENST00000532560 PSORS1C2Q9UIG4 136 aa9.3□□□□□ -0.92
CPSF1-208ENST00000532560 SERTAD4-AS1Q5TG53 156 aa9.29□□□□□ -0.92
CPSF1-208ENST00000532560 J3QL48 77 aa9.28□□□□□ -0.92
CPSF1-208ENST00000532560 SMCPP49901 116 aaPredicted RBP9.28□□□□□ -0.92
CPSF1-208ENST00000532560 COX17Q14061 63 aa9.28□□□□□ -0.92
CPSF1-208ENST00000532560 ADAMTSL4-AS1Q5T5F5 129 aa9.28□□□□□ -0.92
CPSF1-208ENST00000532560 SIGMAR1Q99720 223 aa9.27□□□□□ -0.93
CPSF1-208ENST00000532560 PLA2G2DQ9UNK4 145 aa9.27□□□□□ -0.93
CPSF1-208ENST00000532560 SLC25A20O43772 301 aa9.26□□□□□ -0.93
CPSF1-208ENST00000532560 EIF4EBP3O60516 100 aaPredicted RBP9.26□□□□□ -0.93
CPSF1-208ENST00000532560 PFN2P35080 140 aa9.26□□□□□ -0.93
CPSF1-208ENST00000532560 SPINK6Q6UWN8 80 aa9.26□□□□□ -0.93
CPSF1-208ENST00000532560 KRTAP11-1Q8IUC1 163 aa9.26□□□□□ -0.93
CPSF1-208ENST00000532560 C22orf24Q9Y442 160 aa9.26□□□□□ -0.93
CPSF1-208ENST00000532560 UBE2BP63146 152 aa9.25□□□□□ -0.93
CPSF1-208ENST00000532560 C1orf137Q5JT78 98 aa9.25□□□□□ -0.93
CPSF1-208ENST00000532560 LINC00308Q8TCZ7 52 aa9.25□□□□□ -0.93
CPSF1-208ENST00000532560 IGLV5-37A0A075B6J1 123 aa9.24□□□□□ -0.93
CPSF1-208ENST00000532560 TRBV10-2A0A0K0K1G8 114 aa9.24□□□□□ -0.93
CPSF1-208ENST00000532560 H3BT86 120 aa9.23□□□□□ -0.93
CPSF1-208ENST00000532560 TRIAP1O43715 76 aa9.23□□□□□ -0.93
CPSF1-208ENST00000532560 MRPL55Q7Z7F7 128 aaKnown RBP9.23□□□□□ -0.93
CPSF1-208ENST00000532560 ANKRD29Q8N6D5 301 aa9.23□□□□□ -0.93
CPSF1-208ENST00000532560 SND1-IT1Q9HBX3 110 aa9.23□□□□□ -0.93
CPSF1-208ENST00000532560 FAT3Q8TDW7 4589 aa9.22□□□□□ -0.93
CPSF1-208ENST00000532560 C9JAW5 83 aa9.22□□□□□ -0.93
CPSF1-208ENST00000532560 H7C2G1 150 aa9.22□□□□□ -0.93
CPSF1-208ENST00000532560 MEIG1Q5JSS6 88 aa9.22□□□□□ -0.93
CPSF1-208ENST00000532560 LRP1Q07954 4544 aaKnown RBP9.22□□□□□ -0.93
CPSF1-208ENST00000532560 IGLV7-43P04211 117 aa9.21□□□□□ -0.94
CPSF1-208ENST00000532560 RPL13AP40429 203 aaKnown RBP9.21□□□□□ -0.94
CPSF1-208ENST00000532560 MTURNQ8N3F0 131 aa9.21□□□□□ -0.94
CPSF1-208ENST00000532560 LST1O00453 97 aa9.2□□□□□ -0.94
CPSF1-208ENST00000532560 NKAPP1Q8N9T2 125 aa9.2□□□□□ -0.94
CPSF1-208ENST00000532560 TRAV13-2A0A0B4J235 113 aa9.19□□□□□ -0.94
CPSF1-208ENST00000532560 LINC00158P58513 81 aa9.19□□□□□ -0.94
CPSF1-208ENST00000532560 REG3GQ6UW15 175 aa9.19□□□□□ -0.94
CPSF1-208ENST00000532560 VPREB1P12018 145 aa9.18□□□□□ -0.94
CPSF1-208ENST00000532560 LINC00167Q96N53 147 aa9.18□□□□□ -0.94
CPSF1-208ENST00000532560 MT1HL1P0DM35 61 aa9.17□□□□□ -0.94
CPSF1-208ENST00000532560 C21orf62-AS1Q17RA5 79 aa9.17□□□□□ -0.94
CPSF1-208ENST00000532560 A0A0U1RRA0 63 aa9.16□□□□□ -0.94
CPSF1-208ENST00000532560 DIRC1Q969H9 104 aa9.16□□□□□ -0.94
CPSF1-208ENST00000532560 NPC2P61916 151 aa9.15□□□□□ -0.94
CPSF1-208ENST00000532560 RPL37AP8A6NKH3 93 aa9.14□□□□□ -0.95
CPSF1-208ENST00000532560 H0Y9J4 135 aa9.14□□□□□ -0.95
CPSF1-208ENST00000532560 TRACP01848 142 aa9.14□□□□□ -0.95
CPSF1-208ENST00000532560 MIR7-3HGQ8N6C7 128 aa9.14□□□□□ -0.95
CPSF1-208ENST00000532560 DAND5Q8N907 189 aa9.14□□□□□ -0.95
CPSF1-208ENST00000532560 Q8NDZ9 215 aa9.14□□□□□ -0.95
CPSF1-208ENST00000532560 SOSTDC1Q6X4U4 206 aa9.13□□□□□ -0.95
CPSF1-208ENST00000532560 CDIP1Q9H305 208 aa9.13□□□□□ -0.95
CPSF1-208ENST00000532560 ZNF861PO60384 105 aa9.12□□□□□ -0.95
CPSF1-208ENST00000532560 BCE1O60756 84 aa9.12□□□□□ -0.95
CPSF1-208ENST00000532560 IGLV1-50A0A075B6I6 118 aa9.11□□□□□ -0.95
CPSF1-208ENST00000532560 FAM240AA0A1B0GVK7 77 aa9.11□□□□□ -0.95
CPSF1-208ENST00000532560 RPL28P46779 137 aaKnown RBP9.11□□□□□ -0.95
CPSF1-208ENST00000532560 IGKV2-28A0A075B6P5 120 aa9.1□□□□□ -0.95
CPSF1-208ENST00000532560 IGKV2D-28P01615 120 aa9.1□□□□□ -0.95
CPSF1-208ENST00000532560 H0YGX0 51 aa9.09□□□□□ -0.95
CPSF1-208ENST00000532560 M0R378 163 aa9.08□□□□□ -0.96
CPSF1-208ENST00000532560 ACYP1P07311 99 aa9.08□□□□□ -0.96
CPSF1-208ENST00000532560 CLEC2BQ92478 149 aa9.08□□□□□ -0.96
CPSF1-208ENST00000532560 KRTAP10-8P60410 259 aa9.07□□□□□ -0.96
CPSF1-208ENST00000532560 KRTAP13-1Q8IUC0 172 aa9.07□□□□□ -0.96
CPSF1-208ENST00000532560 TNXBP22105 4242 aa9.07□□□□□ -0.96
CPSF1-208ENST00000532560 KRTAP1-4P0C5Y4 121 aa9.06□□□□□ -0.96
CPSF1-208ENST00000532560 TMEM126AQ9H061 195 aa9.06□□□□□ -0.96
CPSF1-208ENST00000532560 UBE2AP49459 152 aa9.05□□□□□ -0.96
CPSF1-208ENST00000532560 TEX49A0A1B0GTD5 131 aa9.04□□□□□ -0.96
CPSF1-208ENST00000532560 A0A1B0GV72 72 aa9.04□□□□□ -0.96
CPSF1-208ENST00000532560 NCR3O14931 201 aa9.04□□□□□ -0.96
CPSF1-208ENST00000532560 NDUFC2O95298 119 aa9.04□□□□□ -0.96
CPSF1-208ENST00000532560 Q6Q795 121 aa9.03□□□□□ -0.96
CPSF1-208ENST00000532560 A0A1B0GX51 115 aa9.02□□□□□ -0.97
CPSF1-208ENST00000532560 PRYO14603 147 aa9.02□□□□□ -0.97
CPSF1-208ENST00000532560 SNCGO76070 127 aa9.02□□□□□ -0.97
CPSF1-208ENST00000532560 LINC00337Q8N6G1 96 aa9.02□□□□□ -0.97
CPSF1-208ENST00000532560 MT-ATP8P03928 68 aa9.01□□□□□ -0.97
CPSF1-208ENST00000532560 PRLHP81277 87 aa9.01□□□□□ -0.97
CPSF1-208ENST00000532560 FAM19A1Q7Z5A9 133 aa9.01□□□□□ -0.97
CPSF1-208ENST00000532560 PRR26Q8N8Z3 221 aa9.01□□□□□ -0.97
CPSF1-208ENST00000532560 TRBV10-3A0A0K0K1G6 114 aa9□□□□□ -0.97
CPSF1-208ENST00000532560 DNAL4O96015 105 aa9□□□□□ -0.97
CPSF1-208ENST00000532560 BAALC-AS2P0C853 105 aa9□□□□□ -0.97
CPSF1-208ENST00000532560 KCNQ1DNQ9H478 68 aa9□□□□□ -0.97
CPSF1-208ENST00000532560 SMIM11BQ8TCY0 68 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms