RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TRACP01848 142 aa13.24□□□□□ -0.29
VPS28-208ENST00000527797 COX7BP24311 80 aa13.24□□□□□ -0.29
VPS28-208ENST00000527797 UBE2BP63146 152 aa13.21□□□□□ -0.29
VPS28-208ENST00000527797 SACSQ9NZJ4 4579 aa13.21□□□□□ -0.3
VPS28-208ENST00000527797 C9JAW5 83 aa13.21□□□□□ -0.3
VPS28-208ENST00000527797 F8W1H4 67 aa13.21□□□□□ -0.3
VPS28-208ENST00000527797 SNCGO76070 127 aa13.21□□□□□ -0.3
VPS28-208ENST00000527797 ELOF1P60002 83 aaKnown RBP13.21□□□□□ -0.3
VPS28-208ENST00000527797 A0A1B0GX51 115 aa13.2□□□□□ -0.3
VPS28-208ENST00000527797 SPRR1AP35321 89 aa13.2□□□□□ -0.3
VPS28-208ENST00000527797 REG3GQ6UW15 175 aa13.2□□□□□ -0.3
VPS28-208ENST00000527797 LINC00575Q6W349 94 aa13.2□□□□□ -0.3
VPS28-208ENST00000527797 PLAC8Q9NZF1 115 aa13.2□□□□□ -0.3
VPS28-208ENST00000527797 MTURNQ8N3F0 131 aa13.19□□□□□ -0.3
VPS28-208ENST00000527797 PRO0461Q9UI25 63 aa13.19□□□□□ -0.3
VPS28-208ENST00000527797 DNAL4O96015 105 aa13.18□□□□□ -0.3
VPS28-208ENST00000527797 ETDCA0A1B0GVM5 59 aa13.17□□□□□ -0.3
VPS28-208ENST00000527797 SLC25A20O43772 301 aa13.17□□□□□ -0.3
VPS28-208ENST00000527797 KRTAP10-1P60331 282 aa13.17□□□□□ -0.3
VPS28-208ENST00000527797 hADV29S1A0JD25 119 aa13.16□□□□□ -0.3
VPS28-208ENST00000527797 KRTAP4-16G5E9R7 235 aaPredicted RBP13.16□□□□□ -0.3
VPS28-208ENST00000527797 LINC00528Q8N1L1 170 aa13.16□□□□□ -0.3
VPS28-208ENST00000527797 FRAS1Q86XX4 4008 aa13.15□□□□□ -0.3
VPS28-208ENST00000527797 FAM30AQ9NZY2 134 aa13.14□□□□□ -0.31
VPS28-208ENST00000527797 B5MCH6 92 aa13.13□□□□□ -0.31
VPS28-208ENST00000527797 KRTAP11-1Q8IUC1 163 aa13.13□□□□□ -0.31
VPS28-208ENST00000527797 A0A1B0GVY2 172 aa13.13□□□□□ -0.31
VPS28-208ENST00000527797 INAFM2P0DMQ5 153 aa13.12□□□□□ -0.31
VPS28-208ENST00000527797 SMCPP49901 116 aaPredicted RBP13.12□□□□□ -0.31
VPS28-208ENST00000527797 Q6ZRX8 168 aa13.12□□□□□ -0.31
VPS28-208ENST00000527797 Q6ZSA8 131 aa13.12□□□□□ -0.31
VPS28-208ENST00000527797 ANKRD29Q8N6D5 301 aa13.11□□□□□ -0.31
VPS28-208ENST00000527797 H3BT86 120 aa13.1□□□□□ -0.31
VPS28-208ENST00000527797 RYR2Q92736 4967 aa13.1□□□□□ -0.31
VPS28-208ENST00000527797 HECTD4Q9Y4D8 3996 aa13.09□□□□□ -0.31
VPS28-208ENST00000527797 BAALC-AS2P0C853 105 aa13.09□□□□□ -0.31
VPS28-208ENST00000527797 FAM19A1Q7Z5A9 133 aa13.09□□□□□ -0.31
VPS28-208ENST00000527797 CIRBP-AS1Q8TBR5 109 aa13.09□□□□□ -0.31
VPS28-208ENST00000527797 ORMDL1Q9P0S3 153 aa13.09□□□□□ -0.31
VPS28-208ENST00000527797 DHRS4-AS1Q9P1J3 65 aa13.09□□□□□ -0.31
VPS28-208ENST00000527797 LINC01600Q96MT4 127 aa13.07□□□□□ -0.32
VPS28-208ENST00000527797 FAT2Q9NYQ8 4349 aa13.07□□□□□ -0.32
VPS28-208ENST00000527797 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.06□□□□□ -0.32
VPS28-208ENST00000527797 SCXQ7RTU7 201 aa13.06□□□□□ -0.32
VPS28-208ENST00000527797 DNAH11Q96DT5 4516 aa13.05□□□□□ -0.32
VPS28-208ENST00000527797 Q6ZQY7 126 aa13.05□□□□□ -0.32
VPS28-208ENST00000527797 Q9BRP9 147 aa13.05□□□□□ -0.32
VPS28-208ENST00000527797 BCE1O60756 84 aa13.04□□□□□ -0.32
VPS28-208ENST00000527797 ETDBQ3ZM63 59 aa13.03□□□□□ -0.32
VPS28-208ENST00000527797 KMT2CQ8NEZ4 4911 aaKnown RBP13.03□□□□□ -0.32
VPS28-208ENST00000527797 PRLHP81277 87 aa13.02□□□□□ -0.32
VPS28-208ENST00000527797 UBE2AP49459 152 aa13.02□□□□□ -0.33
VPS28-208ENST00000527797 H0Y9J4 135 aa13.01□□□□□ -0.33
VPS28-208ENST00000527797 OCIAD2Q56VL3 154 aa13.01□□□□□ -0.33
VPS28-208ENST00000527797 H3BQ85 93 aa13□□□□□ -0.33
VPS28-208ENST00000527797 TMEM256-PLSCR3K7ERE1 68 aa13□□□□□ -0.33
VPS28-208ENST00000527797 GHRHP01286 108 aa13□□□□□ -0.33
VPS28-208ENST00000527797 PSORS1C2Q9UIG4 136 aa13□□□□□ -0.33
VPS28-208ENST00000527797 TEN1Q86WV5 123 aa12.99□□□□□ -0.33
VPS28-208ENST00000527797 SMCR5Q8TEV8 140 aa12.99□□□□□ -0.33
VPS28-208ENST00000527797 PKD1P98161 4303 aa12.99□□□□□ -0.33
VPS28-208ENST00000527797 HAMPP81172 84 aa12.98□□□□□ -0.33
VPS28-208ENST00000527797 HIGD2AQ9BW72 106 aa12.97□□□□□ -0.33
VPS28-208ENST00000527797 ERC2-IT1O76042 136 aa12.96□□□□□ -0.33
VPS28-208ENST00000527797 C1orf137Q5JT78 98 aa12.96□□□□□ -0.33
VPS28-208ENST00000527797 DNAH5Q8TE73 4624 aa12.95□□□□□ -0.34
VPS28-208ENST00000527797 KRTAP13-1Q8IUC0 172 aa12.94□□□□□ -0.34
VPS28-208ENST00000527797 DEFB105AQ8NG35 78 aa12.92□□□□□ -0.34
VPS28-208ENST00000527797 ST20-AS1Q8NBB2 130 aa12.91□□□□□ -0.34
VPS28-208ENST00000527797 TEX49A0A1B0GTD5 131 aa12.91□□□□□ -0.34
VPS28-208ENST00000527797 PPDPFLQ8WWR9 84 aa12.91□□□□□ -0.34
VPS28-208ENST00000527797 LINC01547P58512 204 aaPredicted RBP12.88□□□□□ -0.35
VPS28-208ENST00000527797 LAMTOR3Q9UHA4 124 aa12.88□□□□□ -0.35
VPS28-208ENST00000527797 IGLV5-48A0A075B6I7 105 aa12.88□□□□□ -0.35
VPS28-208ENST00000527797 Q8N377 158 aa12.88□□□□□ -0.35
VPS28-208ENST00000527797 ZNF861PO60384 105 aa12.87□□□□□ -0.35
VPS28-208ENST00000527797 IGLV7-43P04211 117 aa12.87□□□□□ -0.35
VPS28-208ENST00000527797 JMJD7-PLA2G4BH0Y9G9 81 aa12.86□□□□□ -0.35
VPS28-208ENST00000527797 XGP55808 180 aa12.85□□□□□ -0.35
VPS28-208ENST00000527797 OBSCN-AS1Q96MR7 158 aa12.85□□□□□ -0.35
VPS28-208ENST00000527797 DNAH8Q96JB1 4490 aa12.85□□□□□ -0.35
VPS28-208ENST00000527797 NDUFV3P56181 108 aaKnown RBP12.84□□□□□ -0.35
VPS28-208ENST00000527797 A0A1B0GV72 72 aa12.82□□□□□ -0.36
VPS28-208ENST00000527797 J3QR89 54 aa12.81□□□□□ -0.36
VPS28-208ENST00000527797 K7ERU9 68 aa12.8□□□□□ -0.36
VPS28-208ENST00000527797 RBM3P98179 157 aaKnown RBP12.8□□□□□ -0.36
VPS28-208ENST00000527797 RYR3Q15413 4870 aa12.79□□□□□ -0.36
VPS28-208ENST00000527797 GAGE2AQ6NT46 116 aa12.79□□□□□ -0.36
VPS28-208ENST00000527797 C14orf132Q9NPU4 83 aa12.79□□□□□ -0.36
VPS28-208ENST00000527797 ZNF706Q9Y5V0 76 aaPredicted RBP12.78□□□□□ -0.36
VPS28-208ENST00000527797 SPRR1BP22528 89 aa12.77□□□□□ -0.36
VPS28-208ENST00000527797 C3orf22Q8N5N4 141 aa12.77□□□□□ -0.37
VPS28-208ENST00000527797 SMIM29Q86T20 159 aa12.75□□□□□ -0.37
VPS28-208ENST00000527797 SPRR4Q96PI1 79 aa12.75□□□□□ -0.37
VPS28-208ENST00000527797 DSCR8Q96T75 97 aa12.74□□□□□ -0.37
VPS28-208ENST00000527797 SMR3BP02814 79 aaPredicted RBP12.73□□□□□ -0.37
VPS28-208ENST00000527797 RPL37AP61513 92 aaKnown RBP12.73□□□□□ -0.37
VPS28-208ENST00000527797 DYNC1H1Q14204 4646 aaKnown RBP12.72□□□□□ -0.37
VPS28-208ENST00000527797 F8WEM9 126 aa12.72□□□□□ -0.37
VPS28-208ENST00000527797 LRP1BQ9NZR2 4599 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms