RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 CORTO00230 105 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 SSSCA1O60232 199 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 SPINK8P0C7L1 97 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 MGST2Q99735 147 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 DPH3P1Q9H4G8 78 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 CDC42SE2Q9NRR3 84 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 LINC01558Q9Y6Z2 57 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 V9GYH0 126 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 NSD3Q9BZ95 1437 aa-0.05□□□□□ -2.42
CD44-215ENST00000525241 KTN1Q86UP2 1357 aaKnown RBP-0.06□□□□□ -2.42
CD44-215ENST00000525241 KNDC1Q76NI1 1749 aa-0.06□□□□□ -2.42
CD44-215ENST00000525241 PIGBOS1A0A0B4J2F0 54 aa-0.06□□□□□ -2.42
CD44-215ENST00000525241 HMGN4O00479 90 aa-0.06□□□□□ -2.42
CD44-215ENST00000525241 MRPL54Q6P161 138 aaKnown RBP-0.06□□□□□ -2.42
CD44-215ENST00000525241 FANCAO15360 1455 aa-0.06□□□□□ -2.42
CD44-215ENST00000525241 ATP10BO94823 1461 aa-0.06□□□□□ -2.42
CD44-215ENST00000525241 ARHGAP5Q13017 1502 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 PDCD11Q14690 1871 aaKnown RBP-0.07□□□□□ -2.42
CD44-215ENST00000525241 DNAJC13O75165 2243 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 IGLC7A0M8Q6 106 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 C10orf142B7Z368 130 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 BCE1O60756 84 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 MT1HP80294 61 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 C9orf153Q5TBE3 101 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 MYOZ3Q8TDC0 251 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 SPRR4Q96PI1 79 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 DYNLRB1Q9NP97 96 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 PARP4Q9UKK3 1724 aaKnown RBP-0.07□□□□□ -2.42
CD44-215ENST00000525241 TOGARAM1Q9Y4F4 1720 aa-0.07□□□□□ -2.42
CD44-215ENST00000525241 CCDC88BA6NC98 1476 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 UBE2L5PA0A1B0GUS4 154 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 F8VRH5 84 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 UQCR11O14957 56 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 SPINK1P00995 79 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 GNG4P50150 75 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 TPPP2P59282 170 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 UBE2L3P68036 154 aaKnown RBP-0.08□□□□□ -2.42
CD44-215ENST00000525241 SMIM4Q8WVI0 70 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 PRO0255Q9UI72 69 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 SCAPERQ9BY12 1400 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 ABCC2Q92887 1545 aa-0.08□□□□□ -2.42
CD44-215ENST00000525241 ANKRD36A6QL64 1941 aa-0.09□□□□□ -2.42
CD44-215ENST00000525241 KIAA1551Q9HCM1 1747 aa-0.09□□□□□ -2.42
CD44-215ENST00000525241 HFM1A2PYH4 1435 aa-0.09□□□□□ -2.42
CD44-215ENST00000525241 A0A0D9SFI3 127 aa-0.09□□□□□ -2.42
CD44-215ENST00000525241 CTXND1A0A1B0GTU2 59 aa-0.09□□□□□ -2.42
CD44-215ENST00000525241 IFNGP01579 166 aa-0.09□□□□□ -2.42
CD44-215ENST00000525241 BAGE2Q86Y30 109 aa-0.09□□□□□ -2.42
CD44-215ENST00000525241 FAM167A-AS1Q96KT0 104 aa-0.09□□□□□ -2.42
CD44-215ENST00000525241 U3KQA8 63 aa-0.09□□□□□ -2.42
CD44-215ENST00000525241 DEPDC5O75140 1603 aa-0.09□□□□□ -2.42
CD44-215ENST00000525241 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.09□□□□□ -2.42
CD44-215ENST00000525241 UBR3Q6ZT12 1888 aa-0.1□□□□□ -2.42
CD44-215ENST00000525241 TIAM2Q8IVF5 1701 aa-0.1□□□□□ -2.42
CD44-215ENST00000525241 SAMD9LQ8IVG5 1584 aa-0.1□□□□□ -2.42
CD44-215ENST00000525241 TRAV22A0A0B4J277 110 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 F6UZH7 168 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 SMIM6P0DI80 62 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 ATP5EP56381 51 aaPredicted RBP-0.1□□□□□ -2.43
CD44-215ENST00000525241 UBE2D3P61077 147 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 UBE2D2P62837 147 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 COX17Q14061 63 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 FAM213BQ8TBF2 198 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 CLTCL1P53675 1640 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 SCRIBQ14160 1630 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 MYO3AQ8NEV4 1616 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 RICTORQ6R327 1708 aa-0.1□□□□□ -2.43
CD44-215ENST00000525241 PPP3R1P63098 170 aa-0.11□□□□□ -2.43
CD44-215ENST00000525241 WFDC2Q14508 124 aa-0.11□□□□□ -2.43
CD44-215ENST00000525241 Q6JHZ5 121 aa-0.11□□□□□ -2.43
CD44-215ENST00000525241 TMEM203Q969S6 136 aa-0.11□□□□□ -2.43
CD44-215ENST00000525241 XRN1Q8IZH2 1706 aaKnown RBP-0.11□□□□□ -2.43
CD44-215ENST00000525241 EFCAB5A4FU69 1503 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 LMTK2Q8IWU2 1503 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 QSER1Q2KHR3 1735 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 LOC285095A0A1B0GVY8 99 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 SFT2D2O95562 160 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 HAMPP81172 84 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 TMEM170BQ5T4T1 132 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 TP53AIP1Q9HCN2 124 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 NPVFQ9HCQ7 196 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 CCDC18Q5T9S5 1454 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 KIF1AQ12756 1690 aa-0.12□□□□□ -2.43
CD44-215ENST00000525241 NFAT5O94916 1531 aa-0.13□□□□□ -2.43
CD44-215ENST00000525241 CHKB-CPT1BH3BT56 60 aa-0.13□□□□□ -2.43
CD44-215ENST00000525241 M0R3E3 92 aa-0.13□□□□□ -2.43
CD44-215ENST00000525241 SNAPC5O75971 98 aa-0.13□□□□□ -2.43
CD44-215ENST00000525241 Q8IZM0 81 aa-0.13□□□□□ -2.43
CD44-215ENST00000525241 NRAPQ86VF7 1730 aa-0.13□□□□□ -2.43
CD44-215ENST00000525241 ABCC3O15438 1527 aa-0.13□□□□□ -2.43
CD44-215ENST00000525241 CLIP1P30622 1438 aa-0.13□□□□□ -2.43
CD44-215ENST00000525241 MROH2BQ7Z745 1585 aa-0.14□□□□□ -2.43
CD44-215ENST00000525241 FAM24AA6NFZ4 105 aa-0.14□□□□□ -2.43
CD44-215ENST00000525241 IGLC1P0CG04 106 aa-0.14□□□□□ -2.43
CD44-215ENST00000525241 MT1HL1P0DM35 61 aa-0.14□□□□□ -2.43
CD44-215ENST00000525241 DCDP81605 110 aaKnown RBP-0.14□□□□□ -2.43
CD44-215ENST00000525241 Q0VG73 95 aa-0.14□□□□□ -2.43
CD44-215ENST00000525241 FAM223AQ8IWN6 122 aa-0.14□□□□□ -2.43
CD44-215ENST00000525241 SPCS1Q9Y6A9 102 aa-0.14□□□□□ -2.43
CD44-215ENST00000525241 ABCA5Q8WWZ7 1642 aa-0.14□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 147 ms