RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 IGKCP01834 107 aa1.77□□□□□ -2.13
MCF2-208ENST00000519895 SPRR1AP35321 89 aa1.77□□□□□ -2.13
MCF2-208ENST00000519895 CD164Q04900 197 aa1.77□□□□□ -2.13
MCF2-208ENST00000519895 AHNAKQ09666 5890 aaKnown RBP1.77□□□□□ -2.13
MCF2-208ENST00000519895 COX6A2Q02221 97 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 LINC00337Q8N6G1 96 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 PPDPFLQ8WWR9 84 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 HIGD1BQ9P298 99 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 CDKN2A-AS1Q9UH64 79 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 LOC389332A0A1B0GUA5 103 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 XCL1P47992 114 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 CKS1BP61024 79 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 PRR3P79522 188 aaKnown RBP1.76□□□□□ -2.13
MCF2-208ENST00000519895 KRTAP13-1Q8IUC0 172 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 KRTAP3-1Q9BYR8 98 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 TRAV13-1A0A0B4J241 112 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 RPL37AP8A6NKH3 93 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 M0R378 163 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 KIAA1644Q3SXP7 199 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 SCXQ7RTU7 201 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 HIST3H2BBQ8N257 126 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 KCNQ1DNQ9H478 68 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 ERG28Q9UKR5 140 aa1.76□□□□□ -2.13
MCF2-208ENST00000519895 CIRBP-AS1Q8TBR5 109 aa1.75□□□□□ -2.13
MCF2-208ENST00000519895 A0A096LNI7 61 aa1.75□□□□□ -2.13
MCF2-208ENST00000519895 A0A1B0GX51 115 aa1.75□□□□□ -2.13
MCF2-208ENST00000519895 BCE1O60756 84 aa1.75□□□□□ -2.13
MCF2-208ENST00000519895 FABP4P15090 132 aa1.75□□□□□ -2.13
MCF2-208ENST00000519895 SPRR1BP22528 89 aa1.75□□□□□ -2.13
MCF2-208ENST00000519895 LINC01600Q96MT4 127 aa1.75□□□□□ -2.13
MCF2-208ENST00000519895 ZNF706Q9Y5V0 76 aaPredicted RBP1.75□□□□□ -2.13
MCF2-208ENST00000519895 A0A087WYN8 130 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 FAM240AA0A1B0GVK7 77 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 J3QQQ9 107 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 LINC00483Q53H64 154 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 MEIG1Q5JSS6 88 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 DIRC1Q969H9 104 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 PSORS1C2Q9UIG4 136 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 MACF1Q9UPN3 7388 aaKnown RBP1.74□□□□□ -2.13
MCF2-208ENST00000519895 IGLV6-57P01721 117 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 C9orf129Q5T035 196 aaKnown RBP1.74□□□□□ -2.13
MCF2-208ENST00000519895 KRTAP5-10Q6L8G5 202 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 C5orf38Q86SI9 138 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 KRTAP4-16G5E9R7 235 aaPredicted RBP1.74□□□□□ -2.13
MCF2-208ENST00000519895 IGLV7-43P04211 117 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 LGALS3P17931 250 aaKnown RBP1.74□□□□□ -2.13
MCF2-208ENST00000519895 PFN2P35080 140 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 RPL28P46779 137 aaKnown RBP1.74□□□□□ -2.13
MCF2-208ENST00000519895 KRTAP10-8P60410 259 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 Q5XG85 94 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 UNQ6190/PRO20217Q6UXQ8 127 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 MRPL55Q7Z7F7 128 aaKnown RBP1.74□□□□□ -2.13
MCF2-208ENST00000519895 LITAFQ99732 161 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 NDUFA12Q9UI09 145 aa1.74□□□□□ -2.13
MCF2-208ENST00000519895 ZNF861PO60384 105 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 C3orf79P0CE67 100 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 SPAG11AQ6PDA7 123 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 OPRPNQ99935 248 aaPredicted RBP1.73□□□□□ -2.13
MCF2-208ENST00000519895 JOSD1Q15040 202 aaPredicted RBP1.73□□□□□ -2.13
MCF2-208ENST00000519895 SLC25A34Q6PIV7 304 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 KRTAP7-1Q8IUC3 87 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 HIST1H2BLQ99880 126 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 SND1-IT1Q9HBX3 110 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 AHNAK2Q8IVF2 5795 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 NDUFV3P56181 108 aaKnown RBP1.73□□□□□ -2.13
MCF2-208ENST00000519895 OCIAD2Q56VL3 154 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 C9orf116Q5BN46 136 aaPredicted RBP1.73□□□□□ -2.13
MCF2-208ENST00000519895 STPG4Q8N801 248 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 NHP2Q9NX24 153 aaKnown RBP1.73□□□□□ -2.13
MCF2-208ENST00000519895 DHRS4-AS1Q9P1J3 65 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 C22orf24Q9Y442 160 aa1.73□□□□□ -2.13
MCF2-208ENST00000519895 MUC17Q685J3 4493 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 TRAV13-2A0A0B4J235 113 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 A0A1W2PNN7 141 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 ZNF815PA8K554 130 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 SPINK8P0C7L1 97 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 HIGD2BQ4VC39 106 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 TMEM170BQ5T4T1 132 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 CLPSL2Q6UWE3 100 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 COX8AP10176 69 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 S100A2P29034 98 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 ZC2HC1BQ5TFG8 222 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 SSBP3-AS1Q7Z2R9 100 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 HIST1H4GQ99525 98 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 TMEM126AQ9H061 195 aa1.72□□□□□ -2.13
MCF2-208ENST00000519895 IGLV8-61A0A075B6I0 122 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 A0A0B4J2C4 111 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 CHTF8P0CG12 524 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 NDUFA6P56556 154 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 NKAPP1Q8N9T2 125 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 A0A1B0GW54 56 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 ASB16-AS1Q495Z4 193 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 SOSTDC1Q6X4U4 206 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 FP248Q71RG6 208 aaPredicted RBP1.71□□□□□ -2.14
MCF2-208ENST00000519895 LINC00308Q8TCZ7 52 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.71□□□□□ -2.14
MCF2-208ENST00000519895 FAM19A2Q8N3H0 131 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 SMIM20Q8N5G0 67 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 LINC00167Q96N53 147 aa1.71□□□□□ -2.14
MCF2-208ENST00000519895 IGLV5-48A0A075B6I7 105 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms