RNA–Protein interactions for RNA: ENST00000478658.1

USF3-202, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 8,461 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-202ENST00000478658 R4GN34 69 aa3.65□□□□□ -1.83
USF3-202ENST00000478658 NOTCH2Q04721 2471 aa3.65□□□□□ -1.83
USF3-202ENST00000478658 C4orf26Q17RF5 130 aa3.64□□□□□ -1.83
USF3-202ENST00000478658 OXTP01178 125 aa3.64□□□□□ -1.83
USF3-202ENST00000478658 PRR3P79522 188 aaKnown RBP3.63□□□□□ -1.83
USF3-202ENST00000478658 PHF5AQ7RTV0 110 aaKnown RBP3.63□□□□□ -1.83
USF3-202ENST00000478658 ADAMTSL4-AS1Q5T5F5 129 aa3.63□□□□□ -1.83
USF3-202ENST00000478658 Q75L30 129 aa3.63□□□□□ -1.83
USF3-202ENST00000478658 COL4A1P02462 1669 aa3.62□□□□□ -1.83
USF3-202ENST00000478658 DEFB1P60022 68 aa3.62□□□□□ -1.83
USF3-202ENST00000478658 NAV2Q8IVL1 2488 aa3.62□□□□□ -1.83
USF3-202ENST00000478658 DSCR10P59022 87 aa3.62□□□□□ -1.83
USF3-202ENST00000478658 A8MTW9 85 aa3.61□□□□□ -1.83
USF3-202ENST00000478658 KRTAP16-1A8MUX0 517 aa3.61□□□□□ -1.83
USF3-202ENST00000478658 ROMO1P60602 79 aa3.6□□□□□ -1.83
USF3-202ENST00000478658 SPRNQ5BIV9 151 aa3.6□□□□□ -1.83
USF3-202ENST00000478658 ZNF462Q96JM2 2506 aa3.6□□□□□ -1.83
USF3-202ENST00000478658 BDP1A6H8Y1 2624 aa3.6□□□□□ -1.83
USF3-202ENST00000478658 IGFL1Q6UW32 110 aa3.6□□□□□ -1.83
USF3-202ENST00000478658 NDUFAF8A1L188 74 aa3.59□□□□□ -1.83
USF3-202ENST00000478658 C9orf92A6NGG3 77 aa3.59□□□□□ -1.83
USF3-202ENST00000478658 ZCCHC13Q8WW36 166 aaKnown RBP3.59□□□□□ -1.83
USF3-202ENST00000478658 LITAFQ99732 161 aa3.59□□□□□ -1.83
USF3-202ENST00000478658 PRO0461Q9UI25 63 aa3.59□□□□□ -1.83
USF3-202ENST00000478658 NCOR2Q9Y618 2525 aa3.59□□□□□ -1.83
USF3-202ENST00000478658 A0A1W2PNM2 257 aa3.59□□□□□ -1.84
USF3-202ENST00000478658 TSPEAR-AS2P59090 65 aa3.58□□□□□ -1.84
USF3-202ENST00000478658 MTORP42345 2549 aa3.58□□□□□ -1.84
USF3-202ENST00000478658 CNBPP62633 177 aaKnown RBP3.58□□□□□ -1.84
USF3-202ENST00000478658 FP248Q71RG6 208 aaPredicted RBP3.57□□□□□ -1.84
USF3-202ENST00000478658 FAM218AQ96MZ4 157 aa3.57□□□□□ -1.84
USF3-202ENST00000478658 Q8N9P0 234 aaPredicted RBP3.57□□□□□ -1.84
USF3-202ENST00000478658 ABCA12Q86UK0 2595 aa3.56□□□□□ -1.84
USF3-202ENST00000478658 A0A1W2PNN7 141 aa3.56□□□□□ -1.84
USF3-202ENST00000478658 RPL37P61927 97 aaKnown RBP3.56□□□□□ -1.84
USF3-202ENST00000478658 PRR26Q8N8Z3 221 aa3.56□□□□□ -1.84
USF3-202ENST00000478658 P0C880 135 aa3.55□□□□□ -1.84
USF3-202ENST00000478658 SPRR4Q96PI1 79 aa3.55□□□□□ -1.84
USF3-202ENST00000478658 POLQO75417 2590 aa3.55□□□□□ -1.84
USF3-202ENST00000478658 WIPF1O43516 503 aa3.55□□□□□ -1.84
USF3-202ENST00000478658 A0A087WTM6 91 aa3.54□□□□□ -1.84
USF3-202ENST00000478658 LINC01558Q9Y6Z2 57 aa3.54□□□□□ -1.84
USF3-202ENST00000478658 SPATA8Q6RVD6 105 aa3.54□□□□□ -1.84
USF3-202ENST00000478658 C18orf65Q6ZTR6 163 aa3.54□□□□□ -1.84
USF3-202ENST00000478658 C11orf21Q9P2W6 132 aa3.53□□□□□ -1.84
USF3-202ENST00000478658 C10orf99Q6UWK7 81 aa3.53□□□□□ -1.84
USF3-202ENST00000478658 A0A1W2PNU3 283 aaPredicted RBP3.5□□□□□ -1.85
USF3-202ENST00000478658 M0QZ58 72 aa3.5□□□□□ -1.85
USF3-202ENST00000478658 PP632Q6XCG6 107 aa3.5□□□□□ -1.85
USF3-202ENST00000478658 Q8N1X5 172 aa3.5□□□□□ -1.85
USF3-202ENST00000478658 CHD8Q9HCK8 2581 aa3.5□□□□□ -1.85
USF3-202ENST00000478658 C19orf73Q9NVV2 129 aa3.49□□□□□ -1.85
USF3-202ENST00000478658 OCR1Q9BZK8 76 aa3.49□□□□□ -1.85
USF3-202ENST00000478658 Q8N377 158 aa3.48□□□□□ -1.85
USF3-202ENST00000478658 ZFHX2Q9C0A1 2572 aaPredicted RBP3.48□□□□□ -1.85
USF3-202ENST00000478658 SPTBN4Q9H254 2564 aa3.48□□□□□ -1.85
USF3-202ENST00000478658 FAM168BA1KXE4 195 aa3.47□□□□□ -1.85
USF3-202ENST00000478658 KMT2BQ9UMN6 2715 aaPredicted RBP3.46□□□□□ -1.85
USF3-202ENST00000478658 COL4A2P08572 1712 aa3.46□□□□□ -1.85
USF3-202ENST00000478658 C20orf166-AS1Q96NR2 134 aa3.46□□□□□ -1.86
USF3-202ENST00000478658 JMJD1CQ15652 2540 aa3.45□□□□□ -1.86
USF3-202ENST00000478658 SETD2Q9BYW2 2564 aaPredicted RBP3.45□□□□□ -1.86
USF3-202ENST00000478658 A0A087X002 238 aa3.45□□□□□ -1.86
USF3-202ENST00000478658 WISP2O76076 250 aa3.44□□□□□ -1.86
USF3-202ENST00000478658 FASNP49327 2511 aaKnown RBP3.43□□□□□ -1.86
USF3-202ENST00000478658 MMP24-AS1A0A0U1RRL7 71 aa3.43□□□□□ -1.86
USF3-202ENST00000478658 LINC00612Q8N6U2 182 aa3.43□□□□□ -1.86
USF3-202ENST00000478658 TNP1P09430 55 aa3.42□□□□□ -1.86
USF3-202ENST00000478658 RPS29P62273 56 aaKnown RBP3.42□□□□□ -1.86
USF3-202ENST00000478658 SMR3AQ99954 134 aa3.41□□□□□ -1.86
USF3-202ENST00000478658 GAS8-AS1O95177 125 aa3.4□□□□□ -1.87
USF3-202ENST00000478658 NOTCH2NLQ7Z3S9 236 aa3.4□□□□□ -1.87
USF3-202ENST00000478658 PRO2289Q9P1D8 64 aa3.39□□□□□ -1.87
USF3-202ENST00000478658 Q5VSD8 79 aa3.39□□□□□ -1.87
USF3-202ENST00000478658 KRTAP24-1Q3LI83 254 aa3.38□□□□□ -1.87
USF3-202ENST00000478658 KLK9Q2XQG4 91 aa3.38□□□□□ -1.87
USF3-202ENST00000478658 DMBT1Q9UGM3 2413 aaPredicted RBP3.38□□□□□ -1.87
USF3-202ENST00000478658 A0A096LNJ9 63 aa3.38□□□□□ -1.87
USF3-202ENST00000478658 SPRR1BP22528 89 aa3.37□□□□□ -1.87
USF3-202ENST00000478658 PLAC8Q9NZF1 115 aa3.37□□□□□ -1.87
USF3-202ENST00000478658 URB1-AS1Q96HZ7 61 aa3.37□□□□□ -1.87
USF3-202ENST00000478658 PANO1I0J062 215 aa3.37□□□□□ -1.87
USF3-202ENST00000478658 SMR3BP02814 79 aaPredicted RBP3.37□□□□□ -1.87
USF3-202ENST00000478658 K7EIL1 84 aa3.36□□□□□ -1.87
USF3-202ENST00000478658 Q6ZR54 194 aa3.36□□□□□ -1.87
USF3-202ENST00000478658 ADM2Q7Z4H4 148 aa3.35□□□□□ -1.87
USF3-202ENST00000478658 USP24Q9UPU5 2620 aa3.35□□□□□ -1.87
USF3-202ENST00000478658 SMCPP49901 116 aaPredicted RBP3.35□□□□□ -1.87
USF3-202ENST00000478658 A0A1W2PPR1 153 aa3.34□□□□□ -1.88
USF3-202ENST00000478658 CASC10Q5T4H9 136 aa3.33□□□□□ -1.88
USF3-202ENST00000478658 Q5W150 140 aa3.33□□□□□ -1.88
USF3-202ENST00000478658 PIEZO2Q9H5I5 2752 aa3.33□□□□□ -1.88
USF3-202ENST00000478658 LINC00310P59036 64 aa3.31□□□□□ -1.88
USF3-202ENST00000478658 Q8NDZ9 215 aa3.31□□□□□ -1.88
USF3-202ENST00000478658 CENPEQ02224 2701 aa3.31□□□□□ -1.88
USF3-202ENST00000478658 STAB1Q9NY15 2570 aa3.31□□□□□ -1.88
USF3-202ENST00000478658 ANKRD11Q6UB99 2663 aaPredicted RBP3.3□□□□□ -1.88
USF3-202ENST00000478658 MGAM2Q2M2H8 2515 aa3.29□□□□□ -1.88
USF3-202ENST00000478658 ANAPC11Q9NYG5 84 aa3.29□□□□□ -1.88
USF3-202ENST00000478658 KRTAP25-1Q3LHN0 102 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 89.4 ms