RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 ETDCA0A1B0GVM5 59 aa11.87□□□□□ -0.51
COL9A3-202ENST00000452372 PPDPFQ9H3Y8 114 aa11.87□□□□□ -0.51
COL9A3-202ENST00000452372 RPL13AP40429 203 aaKnown RBP11.86□□□□□ -0.51
COL9A3-202ENST00000452372 LINC00518Q8N0U6 118 aa11.86□□□□□ -0.51
COL9A3-202ENST00000452372 HIGD2AQ9BW72 106 aa11.86□□□□□ -0.51
COL9A3-202ENST00000452372 TRAV23DV6A0A075B6W5 121 aa11.84□□□□□ -0.51
COL9A3-202ENST00000452372 B5MCH6 92 aa11.83□□□□□ -0.52
COL9A3-202ENST00000452372 MUSTN1Q8IVN3 82 aa11.83□□□□□ -0.52
COL9A3-202ENST00000452372 CBY1Q9Y3M2 126 aa11.83□□□□□ -0.52
COL9A3-202ENST00000452372 A0A087X002 238 aa11.82□□□□□ -0.52
COL9A3-202ENST00000452372 CRYGAP11844 174 aa11.82□□□□□ -0.52
COL9A3-202ENST00000452372 JOSD1Q15040 202 aaPredicted RBP11.82□□□□□ -0.52
COL9A3-202ENST00000452372 FAM229BQ4G0N7 80 aa11.82□□□□□ -0.52
COL9A3-202ENST00000452372 OR13C6PQ8NH95 151 aa11.82□□□□□ -0.52
COL9A3-202ENST00000452372 ANAPC11Q9NYG5 84 aa11.82□□□□□ -0.52
COL9A3-202ENST00000452372 ZNF73O43830 326 aaPredicted RBP11.81□□□□□ -0.52
COL9A3-202ENST00000452372 SMCR5Q8TEV8 140 aa11.8□□□□□ -0.52
COL9A3-202ENST00000452372 COX8AP10176 69 aa11.79□□□□□ -0.52
COL9A3-202ENST00000452372 Q6ZRX8 168 aa11.78□□□□□ -0.52
COL9A3-202ENST00000452372 TMA7Q9Y2S6 64 aaKnown RBP11.78□□□□□ -0.52
COL9A3-202ENST00000452372 DLEU1O43261 78 aa11.77□□□□□ -0.53
COL9A3-202ENST00000452372 SPRR4Q96PI1 79 aa11.77□□□□□ -0.53
COL9A3-202ENST00000452372 ZNF706Q9Y5V0 76 aaPredicted RBP11.77□□□□□ -0.53
COL9A3-202ENST00000452372 LPAP08519 4548 aa11.76□□□□□ -0.53
COL9A3-202ENST00000452372 Q9BRP9 147 aa11.76□□□□□ -0.53
COL9A3-202ENST00000452372 HINT1P49773 126 aaPredicted RBP11.75□□□□□ -0.53
COL9A3-202ENST00000452372 KRTAP13-2Q52LG2 175 aa11.75□□□□□ -0.53
COL9A3-202ENST00000452372 TYMSOSQ8TAI1 123 aa11.75□□□□□ -0.53
COL9A3-202ENST00000452372 VAMP8Q9BV40 100 aa11.75□□□□□ -0.53
COL9A3-202ENST00000452372 PAM16Q9Y3D7 125 aa11.75□□□□□ -0.53
COL9A3-202ENST00000452372 SPATA45Q537H7 98 aa11.74□□□□□ -0.53
COL9A3-202ENST00000452372 ERC2-IT1O76042 136 aa11.73□□□□□ -0.53
COL9A3-202ENST00000452372 C14orf144Q96I85 54 aa11.73□□□□□ -0.53
COL9A3-202ENST00000452372 A6NDN8 102 aa11.72□□□□□ -0.53
COL9A3-202ENST00000452372 TRAV13-2A0A0B4J235 113 aa11.7□□□□□ -0.54
COL9A3-202ENST00000452372 PYY3Q5JQD4 70 aa11.7□□□□□ -0.54
COL9A3-202ENST00000452372 C6orf99Q4VX62 202 aa11.69□□□□□ -0.54
COL9A3-202ENST00000452372 HIST1H4GQ99525 98 aa11.69□□□□□ -0.54
COL9A3-202ENST00000452372 A4D1N5 150 aa11.68□□□□□ -0.54
COL9A3-202ENST00000452372 LINC00483Q53H64 154 aa11.68□□□□□ -0.54
COL9A3-202ENST00000452372 SLC25A34Q6PIV7 304 aa11.68□□□□□ -0.54
COL9A3-202ENST00000452372 COX7BP24311 80 aa11.67□□□□□ -0.54
COL9A3-202ENST00000452372 ELOF1P60002 83 aaKnown RBP11.67□□□□□ -0.54
COL9A3-202ENST00000452372 HIGD1BQ9P298 99 aa11.67□□□□□ -0.54
COL9A3-202ENST00000452372 TRBV7-6A0A0J9YX20 115 aa11.66□□□□□ -0.54
COL9A3-202ENST00000452372 GAGE2AQ6NT46 116 aa11.66□□□□□ -0.54
COL9A3-202ENST00000452372 C3orf22Q8N5N4 141 aa11.66□□□□□ -0.54
COL9A3-202ENST00000452372 DHRS4-AS1Q9P1J3 65 aa11.65□□□□□ -0.54
COL9A3-202ENST00000452372 C2orf91Q6ZV80 131 aa11.62□□□□□ -0.55
COL9A3-202ENST00000452372 SMIM11BQ8TCY0 68 aa11.62□□□□□ -0.55
COL9A3-202ENST00000452372 A0A1B0GWB2 263 aa11.61□□□□□ -0.55
COL9A3-202ENST00000452372 LINC00304Q8N9R0 145 aa11.61□□□□□ -0.55
COL9A3-202ENST00000452372 ST20-AS1Q8NBB2 130 aa11.61□□□□□ -0.55
COL9A3-202ENST00000452372 TSPAN13O95857 204 aa11.6□□□□□ -0.55
COL9A3-202ENST00000452372 C12orf57Q99622 126 aa11.57□□□□□ -0.56
COL9A3-202ENST00000452372 CTAG1AP78358 180 aa11.56□□□□□ -0.56
COL9A3-202ENST00000452372 TAL2Q16559 108 aa11.56□□□□□ -0.56
COL9A3-202ENST00000452372 SPRR1BP22528 89 aa11.55□□□□□ -0.56
COL9A3-202ENST00000452372 SPAG11AQ6PDA7 123 aa11.54□□□□□ -0.56
COL9A3-202ENST00000452372 IGLV9-49A0A0B4J1Y8 123 aa11.53□□□□□ -0.56
COL9A3-202ENST00000452372 CFC1BP0CG36 223 aa11.53□□□□□ -0.56
COL9A3-202ENST00000452372 CFC1P0CG37 223 aa11.53□□□□□ -0.56
COL9A3-202ENST00000452372 VAMP3Q15836 100 aa11.53□□□□□ -0.56
COL9A3-202ENST00000452372 SSBP3-AS1Q7Z2R9 100 aa11.53□□□□□ -0.56
COL9A3-202ENST00000452372 Q8NBF4 154 aa11.53□□□□□ -0.56
COL9A3-202ENST00000452372 CEND1Q8N111 149 aa11.52□□□□□ -0.57
COL9A3-202ENST00000452372 MOBPQ13875 183 aa11.51□□□□□ -0.57
COL9A3-202ENST00000452372 C4orf48Q5BLP8 95 aa11.51□□□□□ -0.57
COL9A3-202ENST00000452372 NHP2Q9NX24 153 aaKnown RBP11.51□□□□□ -0.57
COL9A3-202ENST00000452372 A0A0B4J2C4 111 aa11.49□□□□□ -0.57
COL9A3-202ENST00000452372 RAB37Q96AX2 223 aa11.49□□□□□ -0.57
COL9A3-202ENST00000452372 TEX49A0A1B0GTD5 131 aa11.48□□□□□ -0.57
COL9A3-202ENST00000452372 DEFB105AQ8NG35 78 aa11.48□□□□□ -0.57
COL9A3-202ENST00000452372 MUC2Q02817 5179 aa11.48□□□□□ -0.57
COL9A3-202ENST00000452372 SLC25A20O43772 301 aa11.47□□□□□ -0.57
COL9A3-202ENST00000452372 PRR4Q16378 134 aa11.47□□□□□ -0.57
COL9A3-202ENST00000452372 LINC00575Q6W349 94 aa11.47□□□□□ -0.57
COL9A3-202ENST00000452372 UQCR10Q9UDW1 63 aa11.47□□□□□ -0.57
COL9A3-202ENST00000452372 IGLV5-48A0A075B6I7 105 aa11.46□□□□□ -0.57
COL9A3-202ENST00000452372 TMEM238LA0A1B0GVL6 79 aa11.46□□□□□ -0.57
COL9A3-202ENST00000452372 A6NJY4 79 aa11.46□□□□□ -0.57
COL9A3-202ENST00000452372 BVES-AS1Q5T3Y7 98 aa11.46□□□□□ -0.57
COL9A3-202ENST00000452372 C9orf153Q5TBE3 101 aa11.46□□□□□ -0.57
COL9A3-202ENST00000452372 LAMTOR3Q9UHA4 124 aa11.46□□□□□ -0.57
COL9A3-202ENST00000452372 SPINK1P00995 79 aa11.45□□□□□ -0.58
COL9A3-202ENST00000452372 FXYD2P54710 66 aa11.45□□□□□ -0.58
COL9A3-202ENST00000452372 LINC01547P58512 204 aaPredicted RBP11.45□□□□□ -0.58
COL9A3-202ENST00000452372 HSD52Q0P140 79 aa11.45□□□□□ -0.58
COL9A3-202ENST00000452372 H7C2G1 150 aa11.44□□□□□ -0.58
COL9A3-202ENST00000452372 hADV29S1A0JD25 119 aa11.43□□□□□ -0.58
COL9A3-202ENST00000452372 PRO1854Q9UHT4 67 aa11.42□□□□□ -0.58
COL9A3-202ENST00000452372 SMIM29Q86T20 159 aa11.41□□□□□ -0.58
COL9A3-202ENST00000452372 Q1RN00 199 aa11.4□□□□□ -0.58
COL9A3-202ENST00000452372 Q8N377 158 aa11.4□□□□□ -0.58
COL9A3-202ENST00000452372 RETNLBQ9BQ08 111 aa11.4□□□□□ -0.58
COL9A3-202ENST00000452372 RPS29P62273 56 aaKnown RBP11.38□□□□□ -0.59
COL9A3-202ENST00000452372 H0YGX0 51 aa11.37□□□□□ -0.59
COL9A3-202ENST00000452372 SMIM6P0DI80 62 aa11.37□□□□□ -0.59
COL9A3-202ENST00000452372 Q6ZQY7 126 aa11.37□□□□□ -0.59
COL9A3-202ENST00000452372 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms