RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 A0A1W2PNU3 283 aaPredicted RBP4.91□□□□□ -1.62
VPS53-204ENST00000437048 FAM104AQ969W3 186 aa4.9□□□□□ -1.63
VPS53-204ENST00000437048 MAP1AP78559 2803 aaPredicted RBP4.9□□□□□ -1.63
VPS53-204ENST00000437048 DNAH10OSP0CZ25 163 aa4.9□□□□□ -1.63
VPS53-204ENST00000437048 A0A087X002 238 aa4.89□□□□□ -1.63
VPS53-204ENST00000437048 PRLHP81277 87 aa4.89□□□□□ -1.63
VPS53-204ENST00000437048 A0A1B0GVX0 72 aa4.89□□□□□ -1.63
VPS53-204ENST00000437048 UNC79Q9P2D8 2635 aa4.89□□□□□ -1.63
VPS53-204ENST00000437048 IGLV5-48A0A075B6I7 105 aa4.89□□□□□ -1.63
VPS53-204ENST00000437048 PLA2G2AP14555 144 aa4.88□□□□□ -1.63
VPS53-204ENST00000437048 COL6A5A8TX70 2615 aa4.88□□□□□ -1.63
VPS53-204ENST00000437048 A0A0A0MQY5 61 aa4.88□□□□□ -1.63
VPS53-204ENST00000437048 C18orf65Q6ZTR6 163 aa4.88□□□□□ -1.63
VPS53-204ENST00000437048 Q9UF83 564 aa4.88□□□□□ -1.63
VPS53-204ENST00000437048 C15orf56Q8N910 161 aa4.87□□□□□ -1.63
VPS53-204ENST00000437048 TEX15Q9BXT5 2789 aa4.87□□□□□ -1.63
VPS53-204ENST00000437048 FLNAP21333 2647 aaKnown RBP4.87□□□□□ -1.63
VPS53-204ENST00000437048 X6R8D5 127 aa4.87□□□□□ -1.63
VPS53-204ENST00000437048 SPINK1P00995 79 aa4.87□□□□□ -1.63
VPS53-204ENST00000437048 LINC01554Q52M75 96 aa4.87□□□□□ -1.63
VPS53-204ENST00000437048 PRO3102Q9H379 93 aa4.87□□□□□ -1.63
VPS53-204ENST00000437048 C1orf134Q5TEV5 83 aa4.86□□□□□ -1.63
VPS53-204ENST00000437048 PRR34Q9NV39 138 aa4.86□□□□□ -1.63
VPS53-204ENST00000437048 OCR1Q9BZK8 76 aa4.86□□□□□ -1.63
VPS53-204ENST00000437048 C8orf17Q9NRJ1 99 aa4.85□□□□□ -1.63
VPS53-204ENST00000437048 K7EQZ3 153 aa4.85□□□□□ -1.63
VPS53-204ENST00000437048 Q6ZSN1 163 aa4.85□□□□□ -1.63
VPS53-204ENST00000437048 IGLV7-46A0A075B6I9 117 aa4.85□□□□□ -1.63
VPS53-204ENST00000437048 DEFB116Q30KQ4 102 aa4.84□□□□□ -1.63
VPS53-204ENST00000437048 IGLV5-37A0A075B6J1 123 aa4.84□□□□□ -1.63
VPS53-204ENST00000437048 ST20-AS1Q8NBB2 130 aa4.84□□□□□ -1.63
VPS53-204ENST00000437048 SPRR4Q96PI1 79 aa4.84□□□□□ -1.63
VPS53-204ENST00000437048 HELZ2Q9BYK8 2649 aaKnown RBP4.83□□□□□ -1.64
VPS53-204ENST00000437048 SETXQ7Z333 2677 aaKnown RBP4.83□□□□□ -1.64
VPS53-204ENST00000437048 RBM12B-AS1Q9P1G2 102 aa4.83□□□□□ -1.64
VPS53-204ENST00000437048 IGLV1-50A0A075B6I6 118 aa4.83□□□□□ -1.64
VPS53-204ENST00000437048 CHTF8P0CG12 524 aa4.82□□□□□ -1.64
VPS53-204ENST00000437048 LINC01558Q9Y6Z2 57 aa4.81□□□□□ -1.64
VPS53-204ENST00000437048 LINC00483Q53H64 154 aa4.8□□□□□ -1.64
VPS53-204ENST00000437048 TEP1Q99973 2627 aaKnown RBP4.8□□□□□ -1.64
VPS53-204ENST00000437048 LINC00612Q8N6U2 182 aa4.8□□□□□ -1.64
VPS53-204ENST00000437048 PHF5AQ7RTV0 110 aaKnown RBP4.79□□□□□ -1.64
VPS53-204ENST00000437048 IGFL1Q6UW32 110 aa4.78□□□□□ -1.64
VPS53-204ENST00000437048 UTP20O75691 2785 aaKnown RBP4.78□□□□□ -1.64
VPS53-204ENST00000437048 CNBPP62633 177 aaKnown RBP4.77□□□□□ -1.65
VPS53-204ENST00000437048 ZNF861PO60384 105 aa4.77□□□□□ -1.65
VPS53-204ENST00000437048 GCN1Q92616 2671 aaKnown RBP4.77□□□□□ -1.65
VPS53-204ENST00000437048 TYMSOSQ8TAI1 123 aa4.76□□□□□ -1.65
VPS53-204ENST00000437048 INAFM1C9JVW0 142 aa4.76□□□□□ -1.65
VPS53-204ENST00000437048 M0R2N4 97 aa4.76□□□□□ -1.65
VPS53-204ENST00000437048 Q8N377 158 aa4.76□□□□□ -1.65
VPS53-204ENST00000437048 LY6G6CO95867 125 aa4.76□□□□□ -1.65
VPS53-204ENST00000437048 CAMK2N1Q7Z7J9 78 aa4.76□□□□□ -1.65
VPS53-204ENST00000437048 Q8NAQ8 132 aa4.75□□□□□ -1.65
VPS53-204ENST00000437048 SPACA4Q8TDM5 124 aa4.75□□□□□ -1.65
VPS53-204ENST00000437048 NBDYA0A0U1RRE5 68 aa4.74□□□□□ -1.65
VPS53-204ENST00000437048 Q8N9P0 234 aaPredicted RBP4.74□□□□□ -1.65
VPS53-204ENST00000437048 NSD1Q96L73 2696 aaPredicted RBP4.74□□□□□ -1.65
VPS53-204ENST00000437048 FAM229BQ4G0N7 80 aa4.74□□□□□ -1.65
VPS53-204ENST00000437048 KMT2BQ9UMN6 2715 aaPredicted RBP4.74□□□□□ -1.65
VPS53-204ENST00000437048 PLA2G1BP04054 148 aaKnown RBP4.73□□□□□ -1.65
VPS53-204ENST00000437048 ITPR2Q14571 2701 aa4.72□□□□□ -1.65
VPS53-204ENST00000437048 Q96NJ1 140 aa4.71□□□□□ -1.65
VPS53-204ENST00000437048 A0A0G2JQZ4 141 aa4.71□□□□□ -1.66
VPS53-204ENST00000437048 A0A1W2PNN7 141 aa4.71□□□□□ -1.66
VPS53-204ENST00000437048 CSNK1G2-AS1Q8NCQ2 148 aa4.71□□□□□ -1.66
VPS53-204ENST00000437048 A0A1B0GU33 70 aa4.71□□□□□ -1.66
VPS53-204ENST00000437048 Q5XG85 94 aa4.71□□□□□ -1.66
VPS53-204ENST00000437048 C9orf163Q8N9P6 203 aa4.7□□□□□ -1.66
VPS53-204ENST00000437048 C9orf129Q5T035 196 aaKnown RBP4.7□□□□□ -1.66
VPS53-204ENST00000437048 COX6B2Q6YFQ2 88 aa4.7□□□□□ -1.66
VPS53-204ENST00000437048 IGLV8-61A0A075B6I0 122 aa4.7□□□□□ -1.66
VPS53-204ENST00000437048 LINC00588Q9Y4M8 146 aa4.69□□□□□ -1.66
VPS53-204ENST00000437048 LINC00304Q8N9R0 145 aa4.69□□□□□ -1.66
VPS53-204ENST00000437048 RTL8CO15255 209 aa4.69□□□□□ -1.66
VPS53-204ENST00000437048 ZNF292O60281 2723 aa4.69□□□□□ -1.66
VPS53-204ENST00000437048 H3BS24 57 aa4.68□□□□□ -1.66
VPS53-204ENST00000437048 SMR3AQ99954 134 aa4.68□□□□□ -1.66
VPS53-204ENST00000437048 A0A1W2PNM2 257 aa4.67□□□□□ -1.66
VPS53-204ENST00000437048 SPRR1BP22528 89 aa4.66□□□□□ -1.66
VPS53-204ENST00000437048 CEP350Q5VT06 3117 aa4.66□□□□□ -1.66
VPS53-204ENST00000437048 HRES1P13985 223 aa4.66□□□□□ -1.66
VPS53-204ENST00000437048 APLNQ9ULZ1 77 aa4.65□□□□□ -1.66
VPS53-204ENST00000437048 FP248Q71RG6 208 aaPredicted RBP4.65□□□□□ -1.67
VPS53-204ENST00000437048 KRTAP10-9P60411 292 aa4.64□□□□□ -1.67
VPS53-204ENST00000437048 DSCR10P59022 87 aa4.64□□□□□ -1.67
VPS53-204ENST00000437048 Q5VV11 94 aa4.64□□□□□ -1.67
VPS53-204ENST00000437048 DNAH12Q6ZR08 3092 aa4.62□□□□□ -1.67
VPS53-204ENST00000437048 SPRR1AP35321 89 aa4.62□□□□□ -1.67
VPS53-204ENST00000437048 IGLV7-43P04211 117 aa4.62□□□□□ -1.67
VPS53-204ENST00000437048 A0A0C4DFX4 3053 aa4.61□□□□□ -1.67
VPS53-204ENST00000437048 APCP25054 2843 aa4.6□□□□□ -1.67
VPS53-204ENST00000437048 A0A1W2PPR1 153 aa4.58□□□□□ -1.68
VPS53-204ENST00000437048 ROMO1P60602 79 aa4.58□□□□□ -1.68
VPS53-204ENST00000437048 PSORS1C2Q9UIG4 136 aa4.58□□□□□ -1.68
VPS53-204ENST00000437048 Q6ZR54 194 aa4.58□□□□□ -1.68
VPS53-204ENST00000437048 C19orf73Q9NVV2 129 aa4.58□□□□□ -1.68
VPS53-204ENST00000437048 KRTAP16-1A8MUX0 517 aa4.57□□□□□ -1.68
VPS53-204ENST00000437048 TRANK1O15050 2925 aa4.57□□□□□ -1.68
VPS53-204ENST00000437048 IGSF10Q6WRI0 2623 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms