RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 C2orf91Q6ZV80 131 aa5.99□□□□□ -1.45
LIMCH1-202ENST00000381753 VPREB1P12018 145 aa5.99□□□□□ -1.45
LIMCH1-202ENST00000381753 FAM19A4Q96LR4 140 aa5.99□□□□□ -1.45
LIMCH1-202ENST00000381753 IGLV8-61A0A075B6I0 122 aa5.98□□□□□ -1.45
LIMCH1-202ENST00000381753 A0A087WVE0 104 aa5.98□□□□□ -1.45
LIMCH1-202ENST00000381753 TMEM254Q8TBM7 123 aa5.97□□□□□ -1.45
LIMCH1-202ENST00000381753 CFAP46Q8IYW2 2715 aa5.97□□□□□ -1.45
LIMCH1-202ENST00000381753 IGLV5-39A0A0G2JS06 123 aa5.97□□□□□ -1.45
LIMCH1-202ENST00000381753 CXCL6P80162 114 aa5.97□□□□□ -1.45
LIMCH1-202ENST00000381753 ADAMTSL4-AS1Q5T5F5 129 aa5.97□□□□□ -1.45
LIMCH1-202ENST00000381753 A0A1W2PNN7 141 aa5.96□□□□□ -1.45
LIMCH1-202ENST00000381753 ELOF1P60002 83 aaKnown RBP5.96□□□□□ -1.45
LIMCH1-202ENST00000381753 PCSK5Q92824 1860 aa5.96□□□□□ -1.45
LIMCH1-202ENST00000381753 A0A1B0GW54 56 aa5.95□□□□□ -1.46
LIMCH1-202ENST00000381753 TRAV22A0A0B4J277 110 aa5.95□□□□□ -1.46
LIMCH1-202ENST00000381753 SMIM29Q86T20 159 aa5.95□□□□□ -1.46
LIMCH1-202ENST00000381753 TSPEAR-AS2P59090 65 aa5.94□□□□□ -1.46
LIMCH1-202ENST00000381753 ITPR3Q14573 2671 aa5.94□□□□□ -1.46
LIMCH1-202ENST00000381753 COX8CQ7Z4L0 72 aa5.94□□□□□ -1.46
LIMCH1-202ENST00000381753 TEP1Q99973 2627 aaKnown RBP5.93□□□□□ -1.46
LIMCH1-202ENST00000381753 GIG44P09565 113 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-202ENST00000381753 STAB1Q9NY15 2570 aa5.93□□□□□ -1.46
LIMCH1-202ENST00000381753 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-202ENST00000381753 H3BPC8 53 aa5.92□□□□□ -1.46
LIMCH1-202ENST00000381753 SPINT4Q6UDR6 99 aa5.92□□□□□ -1.46
LIMCH1-202ENST00000381753 SPRR4Q96PI1 79 aa5.92□□□□□ -1.46
LIMCH1-202ENST00000381753 FLNAP21333 2647 aaKnown RBP5.92□□□□□ -1.46
LIMCH1-202ENST00000381753 KRTAP10-1P60331 282 aa5.92□□□□□ -1.46
LIMCH1-202ENST00000381753 PRR34Q9NV39 138 aa5.91□□□□□ -1.46
LIMCH1-202ENST00000381753 SRCAPQ6ZRS2 3230 aa5.9□□□□□ -1.46
LIMCH1-202ENST00000381753 LOC101927531A0A1B0GV80 90 aa5.9□□□□□ -1.47
LIMCH1-202ENST00000381753 KRTAP10-2P60368 255 aa5.9□□□□□ -1.47
LIMCH1-202ENST00000381753 MRPL34Q9BQ48 92 aaKnown RBP5.9□□□□□ -1.47
LIMCH1-202ENST00000381753 CAMK2N1Q7Z7J9 78 aa5.88□□□□□ -1.47
LIMCH1-202ENST00000381753 TLX1NBP0CAT3 122 aa5.88□□□□□ -1.47
LIMCH1-202ENST00000381753 LINC00310P59036 64 aa5.88□□□□□ -1.47
LIMCH1-202ENST00000381753 FAM229BQ4G0N7 80 aa5.87□□□□□ -1.47
LIMCH1-202ENST00000381753 C9orf129Q5T035 196 aaKnown RBP5.87□□□□□ -1.47
LIMCH1-202ENST00000381753 Q8N1X5 172 aa5.87□□□□□ -1.47
LIMCH1-202ENST00000381753 CRIPTQ9P021 101 aa5.87□□□□□ -1.47
LIMCH1-202ENST00000381753 CENPFP49454 3210 aa5.86□□□□□ -1.47
LIMCH1-202ENST00000381753 IGFL1Q6UW32 110 aa5.86□□□□□ -1.47
LIMCH1-202ENST00000381753 K7EQZ3 153 aa5.85□□□□□ -1.47
LIMCH1-202ENST00000381753 PLAC8Q9NZF1 115 aa5.85□□□□□ -1.47
LIMCH1-202ENST00000381753 HRES1P13985 223 aa5.85□□□□□ -1.47
LIMCH1-202ENST00000381753 KCNQ1DNQ9H478 68 aa5.85□□□□□ -1.47
LIMCH1-202ENST00000381753 A8MWP4 228 aa5.83□□□□□ -1.48
LIMCH1-202ENST00000381753 KLK9Q2XQG4 91 aa5.83□□□□□ -1.48
LIMCH1-202ENST00000381753 LINC01600Q96MT4 127 aa5.82□□□□□ -1.48
LIMCH1-202ENST00000381753 TRBV7-4A0A0J9YYF1 115 aa5.81□□□□□ -1.48
LIMCH1-202ENST00000381753 A0A1B0GVX0 72 aa5.81□□□□□ -1.48
LIMCH1-202ENST00000381753 PLAC4Q8WY50 150 aa5.81□□□□□ -1.48
LIMCH1-202ENST00000381753 URB1-AS1Q96HZ7 61 aa5.81□□□□□ -1.48
LIMCH1-202ENST00000381753 RPS28P62857 69 aaKnown RBP5.8□□□□□ -1.48
LIMCH1-202ENST00000381753 NOTCH1P46531 2555 aa5.8□□□□□ -1.48
LIMCH1-202ENST00000381753 C8orf17Q9NRJ1 99 aa5.79□□□□□ -1.48
LIMCH1-202ENST00000381753 IGLV5-48A0A075B6I7 105 aa5.79□□□□□ -1.48
LIMCH1-202ENST00000381753 LOC110117498A0A087WWA1 95 aa5.79□□□□□ -1.48
LIMCH1-202ENST00000381753 IGLV5-45A0A087WSX0 123 aa5.78□□□□□ -1.48
LIMCH1-202ENST00000381753 CSAG1Q6PB30 78 aa5.78□□□□□ -1.48
LIMCH1-202ENST00000381753 CR1P17927 2039 aa5.78□□□□□ -1.48
LIMCH1-202ENST00000381753 Q6ZQT0 140 aa5.77□□□□□ -1.48
LIMCH1-202ENST00000381753 FP248Q71RG6 208 aaPredicted RBP5.77□□□□□ -1.49
LIMCH1-202ENST00000381753 GCN1Q92616 2671 aaKnown RBP5.77□□□□□ -1.49
LIMCH1-202ENST00000381753 CD164Q04900 197 aa5.77□□□□□ -1.49
LIMCH1-202ENST00000381753 UQCR11O14957 56 aa5.76□□□□□ -1.49
LIMCH1-202ENST00000381753 A0A096LNJ9 63 aa5.75□□□□□ -1.49
LIMCH1-202ENST00000381753 COL6A5A8TX70 2615 aa5.74□□□□□ -1.49
LIMCH1-202ENST00000381753 A0A0G2JQZ4 141 aa5.73□□□□□ -1.49
LIMCH1-202ENST00000381753 A0A0D9SG42 100 aa5.73□□□□□ -1.49
LIMCH1-202ENST00000381753 SMCPP49901 116 aaPredicted RBP5.73□□□□□ -1.49
LIMCH1-202ENST00000381753 ERC2-IT1O76042 136 aa5.72□□□□□ -1.49
LIMCH1-202ENST00000381753 LITAFQ99732 161 aa5.72□□□□□ -1.49
LIMCH1-202ENST00000381753 UNC79Q9P2D8 2635 aa5.72□□□□□ -1.49
LIMCH1-202ENST00000381753 S4R3F8 94 aa5.72□□□□□ -1.49
LIMCH1-202ENST00000381753 LINC01546A6NGU7 62 aa5.71□□□□□ -1.49
LIMCH1-202ENST00000381753 Q6ZR54 194 aa5.71□□□□□ -1.5
LIMCH1-202ENST00000381753 COA5Q86WW8 74 aa5.7□□□□□ -1.5
LIMCH1-202ENST00000381753 FAM218AQ96MZ4 157 aa5.7□□□□□ -1.5
LIMCH1-202ENST00000381753 TEX15Q9BXT5 2789 aa5.69□□□□□ -1.5
LIMCH1-202ENST00000381753 MIR22HGQ0VDD5 57 aa5.69□□□□□ -1.5
LIMCH1-202ENST00000381753 KRTAP1-5Q9BYS1 174 aa5.68□□□□□ -1.5
LIMCH1-202ENST00000381753 PRO0461Q9UI25 63 aa5.68□□□□□ -1.5
LIMCH1-202ENST00000381753 PRR15Q8IV56 129 aa5.68□□□□□ -1.5
LIMCH1-202ENST00000381753 LINC00483Q53H64 154 aa5.68□□□□□ -1.5
LIMCH1-202ENST00000381753 H3BS24 57 aa5.67□□□□□ -1.5
LIMCH1-202ENST00000381753 CDC42SE1Q9NRR8 79 aa5.67□□□□□ -1.5
LIMCH1-202ENST00000381753 LUZP6Q538Z0 58 aa5.66□□□□□ -1.5
LIMCH1-202ENST00000381753 LCA10Q71F78 164 aa5.65□□□□□ -1.5
LIMCH1-202ENST00000381753 CYP4F30PQ9H0H9 118 aa5.65□□□□□ -1.5
LIMCH1-202ENST00000381753 R4GN34 69 aa5.65□□□□□ -1.51
LIMCH1-202ENST00000381753 Q8N377 158 aa5.64□□□□□ -1.51
LIMCH1-202ENST00000381753 BPTFQ12830 3046 aa5.64□□□□□ -1.51
LIMCH1-202ENST00000381753 A8MUN3 132 aa5.62□□□□□ -1.51
LIMCH1-202ENST00000381753 FAM104AQ969W3 186 aa5.62□□□□□ -1.51
LIMCH1-202ENST00000381753 ZCCHC13Q8WW36 166 aaKnown RBP5.61□□□□□ -1.51
LIMCH1-202ENST00000381753 CEP350Q5VT06 3117 aa5.61□□□□□ -1.51
LIMCH1-202ENST00000381753 DMBT1Q9UGM3 2413 aaPredicted RBP5.6□□□□□ -1.51
LIMCH1-202ENST00000381753 NBEAL1Q6ZS30 2694 aa5.6□□□□□ -1.51
LIMCH1-202ENST00000381753 KTN1-AS1Q86SY8 53 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms