RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 Q75L30 129 aa3.23□□□□□ -1.89
PCDH9-201ENST00000377861 EML5Q05BV3 1969 aa3.23□□□□□ -1.89
PCDH9-201ENST00000377861 PRRC2AP48634 2157 aaKnown RBP3.23□□□□□ -1.89
PCDH9-201ENST00000377861 NBEAL1Q6ZS30 2694 aa3.23□□□□□ -1.89
PCDH9-201ENST00000377861 RAI1Q7Z5J4 1906 aaPredicted RBP3.23□□□□□ -1.89
PCDH9-201ENST00000377861 USP24Q9UPU5 2620 aa3.23□□□□□ -1.89
PCDH9-201ENST00000377861 C1orf134Q5TEV5 83 aa3.23□□□□□ -1.89
PCDH9-201ENST00000377861 DSCAML1Q8TD84 2053 aa3.23□□□□□ -1.89
PCDH9-201ENST00000377861 KTN1-AS1Q86SY8 53 aa3.22□□□□□ -1.89
PCDH9-201ENST00000377861 NBDYA0A0U1RRE5 68 aa3.22□□□□□ -1.89
PCDH9-201ENST00000377861 OXLD1Q5BKU9 147 aa3.22□□□□□ -1.89
PCDH9-201ENST00000377861 C4orf26Q17RF5 130 aa3.22□□□□□ -1.89
PCDH9-201ENST00000377861 MGAM2Q2M2H8 2515 aa3.22□□□□□ -1.89
PCDH9-201ENST00000377861 CFAP46Q8IYW2 2715 aa3.22□□□□□ -1.89
PCDH9-201ENST00000377861 NIPBLQ6KC79 2804 aaeCLIP3.22□□□□□ -1.89
PCDH9-201ENST00000377861 AKAP13Q12802 2813 aa3.21□□□□□ -1.9
PCDH9-201ENST00000377861 A0A1B0GVX0 72 aa3.21□□□□□ -1.9
PCDH9-201ENST00000377861 LINC01558Q9Y6Z2 57 aa3.21□□□□□ -1.9
PCDH9-201ENST00000377861 GOLGB1Q14789 3259 aaKnown RBP3.21□□□□□ -1.9
PCDH9-201ENST00000377861 RPS29P62273 56 aaKnown RBP3.21□□□□□ -1.9
PCDH9-201ENST00000377861 Q9UF83 564 aa3.21□□□□□ -1.9
PCDH9-201ENST00000377861 UTP20O75691 2785 aaKnown RBP3.21□□□□□ -1.9
PCDH9-201ENST00000377861 C7orf65Q6ZTY9 151 aa3.21□□□□□ -1.9
PCDH9-201ENST00000377861 SETXQ7Z333 2677 aaKnown RBP3.2□□□□□ -1.9
PCDH9-201ENST00000377861 INAFM1C9JVW0 142 aa3.2□□□□□ -1.9
PCDH9-201ENST00000377861 NBEAL2Q6ZNJ1 2754 aa3.2□□□□□ -1.9
PCDH9-201ENST00000377861 TEX15Q9BXT5 2789 aa3.2□□□□□ -1.9
PCDH9-201ENST00000377861 TRIOO75962 3097 aa3.2□□□□□ -1.9
PCDH9-201ENST00000377861 LCA10Q71F78 164 aa3.2□□□□□ -1.9
PCDH9-201ENST00000377861 RANBP2P49792 3224 aaKnown RBP3.2□□□□□ -1.9
PCDH9-201ENST00000377861 EIF4EBP3O60516 100 aaPredicted RBP3.2□□□□□ -1.9
PCDH9-201ENST00000377861 PTPRSQ13332 1948 aa3.19□□□□□ -1.9
PCDH9-201ENST00000377861 TNRC6BQ9UPQ9 1833 aaKnown RBP3.19□□□□□ -1.9
PCDH9-201ENST00000377861 RBM12B-AS1Q9P1G2 102 aa3.19□□□□□ -1.9
PCDH9-201ENST00000377861 SMIM29Q86T20 159 aa3.19□□□□□ -1.9
PCDH9-201ENST00000377861 CFAP54Q96N23 3096 aa3.19□□□□□ -1.9
PCDH9-201ENST00000377861 IGKV2-24A0A0C4DH68 120 aa3.19□□□□□ -1.9
PCDH9-201ENST00000377861 Q6ZR54 194 aa3.19□□□□□ -1.9
PCDH9-201ENST00000377861 DEFB4AO15263 64 aa3.19□□□□□ -1.9
PCDH9-201ENST00000377861 IGLV5-52A0A0A0MRZ9 124 aa3.18□□□□□ -1.9
PCDH9-201ENST00000377861 LINC00472Q9H8W2 130 aa3.18□□□□□ -1.9
PCDH9-201ENST00000377861 TACC2O95359 2948 aa3.18□□□□□ -1.9
PCDH9-201ENST00000377861 COL6A5A8TX70 2615 aa3.18□□□□□ -1.9
PCDH9-201ENST00000377861 IGFL1Q6UW32 110 aa3.18□□□□□ -1.9
PCDH9-201ENST00000377861 PCSK5Q92824 1860 aa3.18□□□□□ -1.9
PCDH9-201ENST00000377861 FRYQ5TBA9 3013 aa3.18□□□□□ -1.9
PCDH9-201ENST00000377861 SCXQ7RTU7 201 aa3.18□□□□□ -1.9
PCDH9-201ENST00000377861 IGSF10Q6WRI0 2623 aa3.18□□□□□ -1.9
PCDH9-201ENST00000377861 C18orf65Q6ZTR6 163 aa3.18□□□□□ -1.9
PCDH9-201ENST00000377861 KRTAP4-16G5E9R7 235 aaPredicted RBP3.17□□□□□ -1.9
PCDH9-201ENST00000377861 LAMA2P24043 3122 aaKnown RBP3.17□□□□□ -1.9
PCDH9-201ENST00000377861 MAST4O15021 2626 aa3.17□□□□□ -1.9
PCDH9-201ENST00000377861 COA5Q86WW8 74 aa3.17□□□□□ -1.9
PCDH9-201ENST00000377861 KALRNO60229 2985 aa3.17□□□□□ -1.9
PCDH9-201ENST00000377861 HTTP42858 3142 aa3.17□□□□□ -1.9
PCDH9-201ENST00000377861 FLNAP21333 2647 aaKnown RBP3.17□□□□□ -1.9
PCDH9-201ENST00000377861 C9orf129Q5T035 196 aaKnown RBP3.17□□□□□ -1.9
PCDH9-201ENST00000377861 PTPRBP23467 1997 aa3.17□□□□□ -1.9
PCDH9-201ENST00000377861 C8orf17Q9NRJ1 99 aa3.17□□□□□ -1.9
PCDH9-201ENST00000377861 LINC00483Q53H64 154 aa3.17□□□□□ -1.9
PCDH9-201ENST00000377861 PRB4P10163 310 aaPredicted RBP3.17□□□□□ -1.9
PCDH9-201ENST00000377861 A0A1W2PNM2 257 aa3.17□□□□□ -1.9
PCDH9-201ENST00000377861 PSPHP1O15172 72 aa3.17□□□□□ -1.9
PCDH9-201ENST00000377861 PLAC8Q9NZF1 115 aa3.16□□□□□ -1.9
PCDH9-201ENST00000377861 ZCCHC13Q8WW36 166 aaKnown RBP3.16□□□□□ -1.9
PCDH9-201ENST00000377861 ARHGAP32A7KAX9 2087 aa3.16□□□□□ -1.9
PCDH9-201ENST00000377861 DSCR10P59022 87 aa3.16□□□□□ -1.9
PCDH9-201ENST00000377861 ATMQ13315 3056 aa3.15□□□□□ -1.9
PCDH9-201ENST00000377861 UBR5O95071 2799 aaPredicted RBP3.15□□□□□ -1.9
PCDH9-201ENST00000377861 K7EQZ3 153 aa3.15□□□□□ -1.9
PCDH9-201ENST00000377861 KIAA1549Q9HCM3 1950 aa3.15□□□□□ -1.91
PCDH9-201ENST00000377861 Q8N9P0 234 aaPredicted RBP3.15□□□□□ -1.91
PCDH9-201ENST00000377861 KRTAP26-1Q6PEX3 210 aa3.15□□□□□ -1.91
PCDH9-201ENST00000377861 PRR26Q8N8Z3 221 aa3.15□□□□□ -1.91
PCDH9-201ENST00000377861 FP248Q71RG6 208 aaPredicted RBP3.14□□□□□ -1.91
PCDH9-201ENST00000377861 MGAQ8IWI9 3026 aa3.14□□□□□ -1.91
PCDH9-201ENST00000377861 ST20-AS1Q8NBB2 130 aa3.14□□□□□ -1.91
PCDH9-201ENST00000377861 ADGRG4Q8IZF6 3080 aa3.13□□□□□ -1.91
PCDH9-201ENST00000377861 HECTD1Q9ULT8 2610 aa3.13□□□□□ -1.91
PCDH9-201ENST00000377861 IGLV9-49A0A0B4J1Y8 123 aa3.13□□□□□ -1.91
PCDH9-201ENST00000377861 MIR22HGQ0VDD5 57 aa3.13□□□□□ -1.91
PCDH9-201ENST00000377861 MXRA5Q9NR99 2828 aa3.13□□□□□ -1.91
PCDH9-201ENST00000377861 KRTAP29-1A8MX34 341 aaPredicted RBP3.12□□□□□ -1.91
PCDH9-201ENST00000377861 PLA2G1BP04054 148 aaKnown RBP3.12□□□□□ -1.91
PCDH9-201ENST00000377861 SPINK6Q6UWN8 80 aa3.12□□□□□ -1.91
PCDH9-201ENST00000377861 ITPR2Q14571 2701 aa3.12□□□□□ -1.91
PCDH9-201ENST00000377861 CIRBP-AS1Q8TBR5 109 aa3.11□□□□□ -1.91
PCDH9-201ENST00000377861 PCNTO95613 3336 aa3.11□□□□□ -1.91
PCDH9-201ENST00000377861 KRTAP10-9P60411 292 aa3.11□□□□□ -1.91
PCDH9-201ENST00000377861 CRIPTQ9P021 101 aa3.11□□□□□ -1.91
PCDH9-201ENST00000377861 ZZEF1O43149 2961 aa3.11□□□□□ -1.91
PCDH9-201ENST00000377861 NOTCH1P46531 2555 aa3.1□□□□□ -1.91
PCDH9-201ENST00000377861 PSORS1C2Q9UIG4 136 aa3.1□□□□□ -1.91
PCDH9-201ENST00000377861 KRTAP1-3Q8IUG1 177 aa3.1□□□□□ -1.91
PCDH9-201ENST00000377861 IGLV7-43P04211 117 aa3.1□□□□□ -1.91
PCDH9-201ENST00000377861 SERTAD4-AS1Q5TG53 156 aa3.1□□□□□ -1.91
PCDH9-201ENST00000377861 DMAC1Q96GE9 116 aa3.09□□□□□ -1.91
PCDH9-201ENST00000377861 WWC2-AS2Q96NR7 200 aa3.09□□□□□ -1.91
PCDH9-201ENST00000377861 NF1P21359 2839 aa3.09□□□□□ -1.91
PCDH9-201ENST00000377861 TET2Q6N021 2002 aaPredicted RBP3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms