RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 DNAH11Q96DT5 4516 aa11.78□□□□□ -0.52
CLN3-204ENST00000357857 A0A087WYN8 130 aa11.77□□□□□ -0.52
CLN3-204ENST00000357857 TRBV7-6A0A0J9YX20 115 aa11.77□□□□□ -0.52
CLN3-204ENST00000357857 TRACP01848 142 aa11.77□□□□□ -0.52
CLN3-204ENST00000357857 MTURNQ8N3F0 131 aa11.77□□□□□ -0.52
CLN3-204ENST00000357857 C9JAW5 83 aa11.77□□□□□ -0.53
CLN3-204ENST00000357857 PHF5AQ7RTV0 110 aaKnown RBP11.77□□□□□ -0.53
CLN3-204ENST00000357857 COX7BP24311 80 aa11.76□□□□□ -0.53
CLN3-204ENST00000357857 PRO0461Q9UI25 63 aa11.76□□□□□ -0.53
CLN3-204ENST00000357857 EPM2AB3EWF7 344 aa11.75□□□□□ -0.53
CLN3-204ENST00000357857 F8W1H4 67 aa11.75□□□□□ -0.53
CLN3-204ENST00000357857 ELOF1P60002 83 aaKnown RBP11.74□□□□□ -0.53
CLN3-204ENST00000357857 A0A1B0GX51 115 aa11.74□□□□□ -0.53
CLN3-204ENST00000357857 LINC00575Q6W349 94 aa11.74□□□□□ -0.53
CLN3-204ENST00000357857 SPRR1AP35321 89 aa11.73□□□□□ -0.53
CLN3-204ENST00000357857 UBE2BP63146 152 aa11.73□□□□□ -0.53
CLN3-204ENST00000357857 DNAL4O96015 105 aa11.72□□□□□ -0.53
CLN3-204ENST00000357857 REG3GQ6UW15 175 aa11.72□□□□□ -0.53
CLN3-204ENST00000357857 PKD1P98161 4303 aa11.72□□□□□ -0.53
CLN3-204ENST00000357857 SLC25A20O43772 301 aa11.72□□□□□ -0.53
CLN3-204ENST00000357857 SNCGO76070 127 aa11.72□□□□□ -0.53
CLN3-204ENST00000357857 PLAC8Q9NZF1 115 aa11.72□□□□□ -0.53
CLN3-204ENST00000357857 SMCPP49901 116 aaPredicted RBP11.71□□□□□ -0.54
CLN3-204ENST00000357857 DNAH5Q8TE73 4624 aa11.7□□□□□ -0.54
CLN3-204ENST00000357857 ETDCA0A1B0GVM5 59 aa11.7□□□□□ -0.54
CLN3-204ENST00000357857 KRTAP4-16G5E9R7 235 aaPredicted RBP11.7□□□□□ -0.54
CLN3-204ENST00000357857 LINC00528Q8N1L1 170 aa11.7□□□□□ -0.54
CLN3-204ENST00000357857 hADV29S1A0JD25 119 aa11.69□□□□□ -0.54
CLN3-204ENST00000357857 KRTAP10-1P60331 282 aa11.69□□□□□ -0.54
CLN3-204ENST00000357857 RYR3Q15413 4870 aa11.68□□□□□ -0.54
CLN3-204ENST00000357857 RYR2Q92736 4967 aa11.68□□□□□ -0.54
CLN3-204ENST00000357857 B5MCH6 92 aa11.68□□□□□ -0.54
CLN3-204ENST00000357857 KRTAP11-1Q8IUC1 163 aa11.68□□□□□ -0.54
CLN3-204ENST00000357857 H3BT86 120 aa11.67□□□□□ -0.54
CLN3-204ENST00000357857 ANKRD29Q8N6D5 301 aa11.67□□□□□ -0.54
CLN3-204ENST00000357857 Q6ZRX8 168 aa11.66□□□□□ -0.54
CLN3-204ENST00000357857 FAM30AQ9NZY2 134 aa11.66□□□□□ -0.54
CLN3-204ENST00000357857 A0A1B0GVY2 172 aa11.65□□□□□ -0.54
CLN3-204ENST00000357857 BAALC-AS2P0C853 105 aa11.65□□□□□ -0.54
CLN3-204ENST00000357857 Q6ZSA8 131 aa11.65□□□□□ -0.54
CLN3-204ENST00000357857 LINC01600Q96MT4 127 aa11.65□□□□□ -0.54
CLN3-204ENST00000357857 INAFM2P0DMQ5 153 aa11.64□□□□□ -0.55
CLN3-204ENST00000357857 ORMDL1Q9P0S3 153 aa11.63□□□□□ -0.55
CLN3-204ENST00000357857 DNAH8Q96JB1 4490 aa11.62□□□□□ -0.55
CLN3-204ENST00000357857 FAM19A1Q7Z5A9 133 aa11.62□□□□□ -0.55
CLN3-204ENST00000357857 DHRS4-AS1Q9P1J3 65 aa11.62□□□□□ -0.55
CLN3-204ENST00000357857 ETDBQ3ZM63 59 aa11.61□□□□□ -0.55
CLN3-204ENST00000357857 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.6□□□□□ -0.55
CLN3-204ENST00000357857 Q6ZQY7 126 aa11.6□□□□□ -0.55
CLN3-204ENST00000357857 CIRBP-AS1Q8TBR5 109 aa11.6□□□□□ -0.55
CLN3-204ENST00000357857 Q9BRP9 147 aa11.6□□□□□ -0.55
CLN3-204ENST00000357857 SCXQ7RTU7 201 aa11.59□□□□□ -0.55
CLN3-204ENST00000357857 PRLHP81277 87 aa11.58□□□□□ -0.56
CLN3-204ENST00000357857 TEN1Q86WV5 123 aa11.58□□□□□ -0.56
CLN3-204ENST00000357857 BCE1O60756 84 aa11.57□□□□□ -0.56
CLN3-204ENST00000357857 H0Y9J4 135 aa11.55□□□□□ -0.56
CLN3-204ENST00000357857 TMEM256-PLSCR3K7ERE1 68 aa11.55□□□□□ -0.56
CLN3-204ENST00000357857 UBE2AP49459 152 aa11.55□□□□□ -0.56
CLN3-204ENST00000357857 OCIAD2Q56VL3 154 aa11.55□□□□□ -0.56
CLN3-204ENST00000357857 SMCR5Q8TEV8 140 aa11.55□□□□□ -0.56
CLN3-204ENST00000357857 H3BQ85 93 aa11.55□□□□□ -0.56
CLN3-204ENST00000357857 PSORS1C2Q9UIG4 136 aa11.55□□□□□ -0.56
CLN3-204ENST00000357857 GHRHP01286 108 aa11.54□□□□□ -0.56
CLN3-204ENST00000357857 HAMPP81172 84 aa11.53□□□□□ -0.56
CLN3-204ENST00000357857 ERC2-IT1O76042 136 aa11.52□□□□□ -0.56
CLN3-204ENST00000357857 HIGD2AQ9BW72 106 aa11.52□□□□□ -0.56
CLN3-204ENST00000357857 PPDPFLQ8WWR9 84 aa11.51□□□□□ -0.57
CLN3-204ENST00000357857 TEX49A0A1B0GTD5 131 aa11.5□□□□□ -0.57
CLN3-204ENST00000357857 C1orf137Q5JT78 98 aa11.5□□□□□ -0.57
CLN3-204ENST00000357857 KRTAP13-1Q8IUC0 172 aa11.5□□□□□ -0.57
CLN3-204ENST00000357857 ST20-AS1Q8NBB2 130 aa11.49□□□□□ -0.57
CLN3-204ENST00000357857 PKHD1P08F94 4074 aa11.48□□□□□ -0.57
CLN3-204ENST00000357857 DEFB105AQ8NG35 78 aa11.48□□□□□ -0.57
CLN3-204ENST00000357857 LINC01547P58512 204 aaPredicted RBP11.46□□□□□ -0.57
CLN3-204ENST00000357857 IGLV5-48A0A075B6I7 105 aa11.46□□□□□ -0.58
CLN3-204ENST00000357857 Q8N377 158 aa11.46□□□□□ -0.58
CLN3-204ENST00000357857 LAMTOR3Q9UHA4 124 aa11.45□□□□□ -0.58
CLN3-204ENST00000357857 LRP1BQ9NZR2 4599 aa11.44□□□□□ -0.58
CLN3-204ENST00000357857 OBSCN-AS1Q96MR7 158 aa11.44□□□□□ -0.58
CLN3-204ENST00000357857 A0A1B0GV72 72 aa11.43□□□□□ -0.58
CLN3-204ENST00000357857 JMJD7-PLA2G4BH0Y9G9 81 aa11.43□□□□□ -0.58
CLN3-204ENST00000357857 DYNC1H1Q14204 4646 aaKnown RBP11.42□□□□□ -0.58
CLN3-204ENST00000357857 ZNF861PO60384 105 aa11.42□□□□□ -0.58
CLN3-204ENST00000357857 IGLV7-43P04211 117 aa11.42□□□□□ -0.58
CLN3-204ENST00000357857 NDUFV3P56181 108 aaKnown RBP11.42□□□□□ -0.58
CLN3-204ENST00000357857 K7ERU9 68 aa11.41□□□□□ -0.58
CLN3-204ENST00000357857 J3QR89 54 aa11.4□□□□□ -0.58
CLN3-204ENST00000357857 XGP55808 180 aa11.4□□□□□ -0.58
CLN3-204ENST00000357857 C14orf132Q9NPU4 83 aa11.39□□□□□ -0.59
CLN3-204ENST00000357857 RBM3P98179 157 aaKnown RBP11.38□□□□□ -0.59
CLN3-204ENST00000357857 GAGE2AQ6NT46 116 aa11.36□□□□□ -0.59
CLN3-204ENST00000357857 C3orf22Q8N5N4 141 aa11.36□□□□□ -0.59
CLN3-204ENST00000357857 SPRR1BP22528 89 aa11.35□□□□□ -0.59
CLN3-204ENST00000357857 SMIM29Q86T20 159 aa11.34□□□□□ -0.59
CLN3-204ENST00000357857 ZNF706Q9Y5V0 76 aaPredicted RBP11.34□□□□□ -0.59
CLN3-204ENST00000357857 SPRR4Q96PI1 79 aa11.33□□□□□ -0.6
CLN3-204ENST00000357857 DSCR8Q96T75 97 aa11.32□□□□□ -0.6
CLN3-204ENST00000357857 SRRM2Q9UQ35 2752 aaKnown RBP11.3□□□□□ -0.6
CLN3-204ENST00000357857 LOC110117498A0A087WWA1 95 aa11.3□□□□□ -0.6
CLN3-204ENST00000357857 F8WEM9 126 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms