RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZCCHC13Q8WW36 166 aaKnown RBP4.46□□□□□ -1.7
VPS39-202ENST00000348544 LELP1Q5T871 98 aa4.45□□□□□ -1.7
VPS39-202ENST00000348544 PRR15Q8IV56 129 aa4.45□□□□□ -1.7
VPS39-202ENST00000348544 Q8N377 158 aa4.45□□□□□ -1.7
VPS39-202ENST00000348544 Q1T7F1 81 aa4.45□□□□□ -1.7
VPS39-202ENST00000348544 DEFB113Q30KQ7 82 aa4.45□□□□□ -1.7
VPS39-202ENST00000348544 DEFB105AQ8NG35 78 aa4.45□□□□□ -1.7
VPS39-202ENST00000348544 ANK3Q12955 4377 aaKnown RBP4.44□□□□□ -1.7
VPS39-202ENST00000348544 IGLV5-48A0A075B6I7 105 aa4.44□□□□□ -1.7
VPS39-202ENST00000348544 A0A1W2PNM2 257 aa4.44□□□□□ -1.7
VPS39-202ENST00000348544 DEFB135Q30KP9 77 aa4.44□□□□□ -1.7
VPS39-202ENST00000348544 KPRPQ5T749 579 aaPredicted RBP4.44□□□□□ -1.7
VPS39-202ENST00000348544 Q6ZRU5 148 aa4.44□□□□□ -1.7
VPS39-202ENST00000348544 CAMK2N2Q96S95 79 aa4.44□□□□□ -1.7
VPS39-202ENST00000348544 FLNAP21333 2647 aaKnown RBP4.44□□□□□ -1.7
VPS39-202ENST00000348544 EGFEM1PQ0D2K5 195 aa4.43□□□□□ -1.7
VPS39-202ENST00000348544 MTORP42345 2549 aa4.43□□□□□ -1.7
VPS39-202ENST00000348544 PSPHP1O15172 72 aa4.43□□□□□ -1.7
VPS39-202ENST00000348544 HTN3P15516 51 aa4.43□□□□□ -1.7
VPS39-202ENST00000348544 KRTAP26-1Q6PEX3 210 aa4.43□□□□□ -1.7
VPS39-202ENST00000348544 VWFP04275 2813 aa4.42□□□□□ -1.7
VPS39-202ENST00000348544 DSCR10P59022 87 aa4.42□□□□□ -1.7
VPS39-202ENST00000348544 C15orf56Q8N910 161 aa4.42□□□□□ -1.7
VPS39-202ENST00000348544 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.42□□□□□ -1.7
VPS39-202ENST00000348544 TRAV22A0A0B4J277 110 aa4.42□□□□□ -1.7
VPS39-202ENST00000348544 PRR4Q16378 134 aa4.42□□□□□ -1.7
VPS39-202ENST00000348544 ST20-AS1Q8NBB2 130 aa4.42□□□□□ -1.7
VPS39-202ENST00000348544 ZNF462Q96JM2 2506 aa4.42□□□□□ -1.7
VPS39-202ENST00000348544 PMAIP1Q13794 54 aa4.41□□□□□ -1.7
VPS39-202ENST00000348544 K7EQZ3 153 aa4.41□□□□□ -1.7
VPS39-202ENST00000348544 Q8NAQ8 132 aa4.41□□□□□ -1.7
VPS39-202ENST00000348544 KCNQ1DNQ9H478 68 aa4.41□□□□□ -1.7
VPS39-202ENST00000348544 ETDCA0A1B0GVM5 59 aa4.4□□□□□ -1.7
VPS39-202ENST00000348544 A8MU10 97 aa4.4□□□□□ -1.7
VPS39-202ENST00000348544 KRTAP10-3P60369 221 aa4.4□□□□□ -1.7
VPS39-202ENST00000348544 SERTAD4-AS1Q5TG53 156 aa4.4□□□□□ -1.7
VPS39-202ENST00000348544 HIVEP2P31629 2446 aa4.4□□□□□ -1.7
VPS39-202ENST00000348544 ACANP16112 2415 aa4.4□□□□□ -1.7
VPS39-202ENST00000348544 WFDC10BQ8IUB3 73 aa4.4□□□□□ -1.71
VPS39-202ENST00000348544 C7orf33Q8WU49 177 aa4.4□□□□□ -1.71
VPS39-202ENST00000348544 Q9BRP9 147 aa4.4□□□□□ -1.71
VPS39-202ENST00000348544 C1orf137Q5JT78 98 aa4.39□□□□□ -1.71
VPS39-202ENST00000348544 Q8NBF4 154 aa4.39□□□□□ -1.71
VPS39-202ENST00000348544 CYP4F30PQ9H0H9 118 aa4.39□□□□□ -1.71
VPS39-202ENST00000348544 UBR5O95071 2799 aaPredicted RBP4.39□□□□□ -1.71
VPS39-202ENST00000348544 PSCAO43653 123 aa4.39□□□□□ -1.71
VPS39-202ENST00000348544 PRB2P02812 416 aaPredicted RBP4.39□□□□□ -1.71
VPS39-202ENST00000348544 HIVEP1P15822 2718 aa4.39□□□□□ -1.71
VPS39-202ENST00000348544 A8MUN3 132 aa4.39□□□□□ -1.71
VPS39-202ENST00000348544 A0A1B0GW54 56 aa4.38□□□□□ -1.71
VPS39-202ENST00000348544 KRTAP4-16G5E9R7 235 aaPredicted RBP4.38□□□□□ -1.71
VPS39-202ENST00000348544 KRTAP1-1Q07627 177 aa4.38□□□□□ -1.71
VPS39-202ENST00000348544 SPRR4Q96PI1 79 aa4.38□□□□□ -1.71
VPS39-202ENST00000348544 UNC79Q9P2D8 2635 aa4.38□□□□□ -1.71
VPS39-202ENST00000348544 Q6ZRX8 168 aa4.38□□□□□ -1.71
VPS39-202ENST00000348544 NKAPP1Q8N9T2 125 aa4.37□□□□□ -1.71
VPS39-202ENST00000348544 RPL37AP8A6NKH3 93 aa4.37□□□□□ -1.71
VPS39-202ENST00000348544 HCG22E2RYF7 251 aa4.37□□□□□ -1.71
VPS39-202ENST00000348544 SPART-AS1P0CW21 52 aa4.37□□□□□ -1.71
VPS39-202ENST00000348544 A0A0G2JQZ4 141 aa4.36□□□□□ -1.71
VPS39-202ENST00000348544 A0A1W2PNN7 141 aa4.36□□□□□ -1.71
VPS39-202ENST00000348544 SYCNQ0VAF6 134 aa4.36□□□□□ -1.71
VPS39-202ENST00000348544 Q5VV11 94 aa4.36□□□□□ -1.71
VPS39-202ENST00000348544 DHRS4-AS1Q9P1J3 65 aa4.36□□□□□ -1.71
VPS39-202ENST00000348544 FAM168BA1KXE4 195 aa4.35□□□□□ -1.71
VPS39-202ENST00000348544 APOC4P55056 127 aa4.35□□□□□ -1.71
VPS39-202ENST00000348544 FAM229AH3BQW9 127 aa4.35□□□□□ -1.71
VPS39-202ENST00000348544 DEFB116Q30KQ4 102 aa4.35□□□□□ -1.71
VPS39-202ENST00000348544 SPRR1AP35321 89 aa4.34□□□□□ -1.71
VPS39-202ENST00000348544 KRTAP7-1Q8IUC3 87 aa4.34□□□□□ -1.71
VPS39-202ENST00000348544 PKD1L1Q8TDX9 2849 aa4.34□□□□□ -1.71
VPS39-202ENST00000348544 IGLV1-50A0A075B6I6 118 aa4.34□□□□□ -1.72
VPS39-202ENST00000348544 WFDC13Q8IUB5 93 aa4.34□□□□□ -1.72
VPS39-202ENST00000348544 B9D2Q9BPU9 175 aa4.33□□□□□ -1.72
VPS39-202ENST00000348544 FASNP49327 2511 aaKnown RBP4.32□□□□□ -1.72
VPS39-202ENST00000348544 IGKV2D-24A0A075B6R9 120 aa4.32□□□□□ -1.72
VPS39-202ENST00000348544 NDUFB1O75438 58 aa4.32□□□□□ -1.72
VPS39-202ENST00000348544 LINC00476Q8WZB0 136 aa4.32□□□□□ -1.72
VPS39-202ENST00000348544 LINC00208Q96KT6 92 aa4.32□□□□□ -1.72
VPS39-202ENST00000348544 Q8N9P0 234 aaPredicted RBP4.32□□□□□ -1.72
VPS39-202ENST00000348544 TENM1Q9UKZ4 2725 aa4.32□□□□□ -1.72
VPS39-202ENST00000348544 C16orf90A8MZG2 172 aa4.31□□□□□ -1.72
VPS39-202ENST00000348544 PLA2G2DQ9UNK4 145 aa4.31□□□□□ -1.72
VPS39-202ENST00000348544 PDZD2O15018 2839 aa4.31□□□□□ -1.72
VPS39-202ENST00000348544 IGLV5-37A0A075B6J1 123 aa4.31□□□□□ -1.72
VPS39-202ENST00000348544 KRTAP29-1A8MX34 341 aaPredicted RBP4.31□□□□□ -1.72
VPS39-202ENST00000348544 RPL37AP61513 92 aaKnown RBP4.31□□□□□ -1.72
VPS39-202ENST00000348544 USP24Q9UPU5 2620 aa4.31□□□□□ -1.72
VPS39-202ENST00000348544 MP68P56378 58 aa4.3□□□□□ -1.72
VPS39-202ENST00000348544 IGFL1Q6UW32 110 aa4.3□□□□□ -1.72
VPS39-202ENST00000348544 RETNQ9HD89 108 aa4.3□□□□□ -1.72
VPS39-202ENST00000348544 F8P00451 2351 aa4.3□□□□□ -1.72
VPS39-202ENST00000348544 TLX1NBP0CAT3 122 aa4.3□□□□□ -1.72
VPS39-202ENST00000348544 UBE2BP63146 152 aa4.3□□□□□ -1.72
VPS39-202ENST00000348544 CD164Q04900 197 aa4.3□□□□□ -1.72
VPS39-202ENST00000348544 LINC00588Q9Y4M8 146 aa4.3□□□□□ -1.72
VPS39-202ENST00000348544 CHKB-CPT1BH3BT56 60 aa4.29□□□□□ -1.72
VPS39-202ENST00000348544 SPANXA2-OT1Q8N9U9 137 aa4.29□□□□□ -1.72
VPS39-202ENST00000348544 FLNBO75369 2602 aaKnown RBP4.29□□□□□ -1.72
VPS39-202ENST00000348544 PRR15LQ9BU68 103 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms