RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TCL1BO95988 128 aa9.77□□□□□ -0.85
CLN3-201ENST00000333496 IFITM1P13164 125 aa9.77□□□□□ -0.85
CLN3-201ENST00000333496 KRTAP11-1Q8IUC1 163 aa9.77□□□□□ -0.85
CLN3-201ENST00000333496 PSORS1C2Q9UIG4 136 aa9.77□□□□□ -0.85
CLN3-201ENST00000333496 SCGB1C2P0DMR2 95 aa9.76□□□□□ -0.85
CLN3-201ENST00000333496 MTURNQ8N3F0 131 aa9.75□□□□□ -0.85
CLN3-201ENST00000333496 SMCPP49901 116 aaPredicted RBP9.74□□□□□ -0.85
CLN3-201ENST00000333496 Q1RN00 199 aa9.74□□□□□ -0.85
CLN3-201ENST00000333496 SFTA2Q6UW10 78 aa9.74□□□□□ -0.85
CLN3-201ENST00000333496 TEN1Q86WV5 123 aa9.74□□□□□ -0.85
CLN3-201ENST00000333496 COPS9Q8WXC6 57 aa9.74□□□□□ -0.85
CLN3-201ENST00000333496 XAGE1AQ9HD64 81 aa9.74□□□□□ -0.85
CLN3-201ENST00000333496 TNXBP22105 4242 aa9.74□□□□□ -0.85
CLN3-201ENST00000333496 EIF4EBP3O60516 100 aaPredicted RBP9.74□□□□□ -0.85
CLN3-201ENST00000333496 SCGB1A1P11684 91 aa9.73□□□□□ -0.85
CLN3-201ENST00000333496 SERTAD4-AS1Q5TG53 156 aa9.73□□□□□ -0.85
CLN3-201ENST00000333496 PPDPFLQ8WWR9 84 aa9.73□□□□□ -0.85
CLN3-201ENST00000333496 ZNF625Q96I27 306 aaPredicted RBP9.73□□□□□ -0.85
CLN3-201ENST00000333496 MT1HL1P0DM35 61 aa9.72□□□□□ -0.85
CLN3-201ENST00000333496 ATXN8Q156A1 80 aa9.72□□□□□ -0.85
CLN3-201ENST00000333496 SPINK6Q6UWN8 80 aa9.72□□□□□ -0.85
CLN3-201ENST00000333496 HERV-K104P63124 156 aa9.71□□□□□ -0.86
CLN3-201ENST00000333496 C1orf137Q5JT78 98 aa9.71□□□□□ -0.86
CLN3-201ENST00000333496 ADAMTSL4-AS1Q5T5F5 129 aa9.71□□□□□ -0.86
CLN3-201ENST00000333496 SIGMAR1Q99720 223 aa9.71□□□□□ -0.86
CLN3-201ENST00000333496 PPDPFQ9H3Y8 114 aa9.71□□□□□ -0.86
CLN3-201ENST00000333496 LINC01600Q96MT4 127 aa9.7□□□□□ -0.86
CLN3-201ENST00000333496 SLC25A20O43772 301 aa9.69□□□□□ -0.86
CLN3-201ENST00000333496 COX6CP09669 75 aa9.69□□□□□ -0.86
CLN3-201ENST00000333496 C22orf24Q9Y442 160 aa9.69□□□□□ -0.86
CLN3-201ENST00000333496 H7C2G1 150 aa9.68□□□□□ -0.86
CLN3-201ENST00000333496 TRIAP1O43715 76 aa9.67□□□□□ -0.86
CLN3-201ENST00000333496 C9JAW5 83 aa9.67□□□□□ -0.86
CLN3-201ENST00000333496 IGLV7-43P04211 117 aa9.67□□□□□ -0.86
CLN3-201ENST00000333496 UBE2BP63146 152 aa9.67□□□□□ -0.86
CLN3-201ENST00000333496 ANKRD29Q8N6D5 301 aa9.67□□□□□ -0.86
CLN3-201ENST00000333496 PFN2P35080 140 aa9.66□□□□□ -0.86
CLN3-201ENST00000333496 MEIG1Q5JSS6 88 aa9.66□□□□□ -0.86
CLN3-201ENST00000333496 LINC00308Q8TCZ7 52 aa9.65□□□□□ -0.86
CLN3-201ENST00000333496 PLA2G2DQ9UNK4 145 aa9.65□□□□□ -0.86
CLN3-201ENST00000333496 TRBV10-2A0A0K0K1G8 114 aa9.64□□□□□ -0.87
CLN3-201ENST00000333496 RPL13AP40429 203 aaKnown RBP9.64□□□□□ -0.87
CLN3-201ENST00000333496 NPC2P61916 151 aa9.64□□□□□ -0.87
CLN3-201ENST00000333496 H3BT86 120 aa9.63□□□□□ -0.87
CLN3-201ENST00000333496 REG3GQ6UW15 175 aa9.63□□□□□ -0.87
CLN3-201ENST00000333496 MRPL55Q7Z7F7 128 aaKnown RBP9.63□□□□□ -0.87
CLN3-201ENST00000333496 A0A0U1RRA0 63 aa9.62□□□□□ -0.87
CLN3-201ENST00000333496 COX17Q14061 63 aa9.62□□□□□ -0.87
CLN3-201ENST00000333496 DAND5Q8N907 189 aa9.62□□□□□ -0.87
CLN3-201ENST00000333496 IGLV5-37A0A075B6J1 123 aa9.61□□□□□ -0.87
CLN3-201ENST00000333496 LST1O00453 97 aa9.61□□□□□ -0.87
CLN3-201ENST00000333496 LINC00167Q96N53 147 aa9.61□□□□□ -0.87
CLN3-201ENST00000333496 SND1-IT1Q9HBX3 110 aa9.61□□□□□ -0.87
CLN3-201ENST00000333496 LINC00158P58513 81 aa9.6□□□□□ -0.87
CLN3-201ENST00000333496 KRTAP10-8P60410 259 aa9.6□□□□□ -0.87
CLN3-201ENST00000333496 CDIP1Q9H305 208 aa9.6□□□□□ -0.87
CLN3-201ENST00000333496 RPL37AP8A6NKH3 93 aa9.59□□□□□ -0.87
CLN3-201ENST00000333496 MIR7-3HGQ8N6C7 128 aa9.58□□□□□ -0.88
CLN3-201ENST00000333496 Q8NDZ9 215 aa9.58□□□□□ -0.88
CLN3-201ENST00000333496 DIRC1Q969H9 104 aa9.58□□□□□ -0.88
CLN3-201ENST00000333496 H0Y9J4 135 aa9.57□□□□□ -0.88
CLN3-201ENST00000333496 VPREB1P12018 145 aa9.57□□□□□ -0.88
CLN3-201ENST00000333496 SOSTDC1Q6X4U4 206 aa9.56□□□□□ -0.88
CLN3-201ENST00000333496 NKAPP1Q8N9T2 125 aa9.56□□□□□ -0.88
CLN3-201ENST00000333496 TRAV13-2A0A0B4J235 113 aa9.55□□□□□ -0.88
CLN3-201ENST00000333496 ZNF861PO60384 105 aa9.54□□□□□ -0.88
CLN3-201ENST00000333496 CLEC2BQ92478 149 aa9.54□□□□□ -0.88
CLN3-201ENST00000333496 BCE1O60756 84 aa9.53□□□□□ -0.88
CLN3-201ENST00000333496 KRTAP1-4P0C5Y4 121 aa9.53□□□□□ -0.88
CLN3-201ENST00000333496 IGKV2-28A0A075B6P5 120 aa9.52□□□□□ -0.89
CLN3-201ENST00000333496 IGKV2D-28P01615 120 aa9.52□□□□□ -0.89
CLN3-201ENST00000333496 TRACP01848 142 aa9.52□□□□□ -0.89
CLN3-201ENST00000333496 HMCN2Q8NDA2 5059 aa9.51□□□□□ -0.89
CLN3-201ENST00000333496 IGLV1-50A0A075B6I6 118 aa9.51□□□□□ -0.89
CLN3-201ENST00000333496 TEX49A0A1B0GTD5 131 aa9.5□□□□□ -0.89
CLN3-201ENST00000333496 A0A1B0GV72 72 aa9.5□□□□□ -0.89
CLN3-201ENST00000333496 FAM240AA0A1B0GVK7 77 aa9.5□□□□□ -0.89
CLN3-201ENST00000333496 MT-ATP8P03928 68 aa9.49□□□□□ -0.89
CLN3-201ENST00000333496 PRR26Q8N8Z3 221 aa9.49□□□□□ -0.89
CLN3-201ENST00000333496 RPL28P46779 137 aaKnown RBP9.49□□□□□ -0.89
CLN3-201ENST00000333496 KRTAP13-1Q8IUC0 172 aa9.49□□□□□ -0.89
CLN3-201ENST00000333496 TMEM126AQ9H061 195 aa9.46□□□□□ -0.89
CLN3-201ENST00000333496 M0R378 163 aa9.45□□□□□ -0.9
CLN3-201ENST00000333496 SNCGO76070 127 aa9.45□□□□□ -0.9
CLN3-201ENST00000333496 LINC00337Q8N6G1 96 aa9.44□□□□□ -0.9
CLN3-201ENST00000333496 NDUFC2O95298 119 aa9.43□□□□□ -0.9
CLN3-201ENST00000333496 ACYP1P07311 99 aa9.43□□□□□ -0.9
CLN3-201ENST00000333496 UBE2AP49459 152 aa9.43□□□□□ -0.9
CLN3-201ENST00000333496 H0YGX0 51 aa9.42□□□□□ -0.9
CLN3-201ENST00000333496 NCR3O14931 201 aa9.42□□□□□ -0.9
CLN3-201ENST00000333496 PRLHP81277 87 aa9.42□□□□□ -0.9
CLN3-201ENST00000333496 Q6Q795 121 aa9.42□□□□□ -0.9
CLN3-201ENST00000333496 FAM19A1Q7Z5A9 133 aa9.42□□□□□ -0.9
CLN3-201ENST00000333496 A0A087X002 238 aa9.39□□□□□ -0.91
CLN3-201ENST00000333496 DNAL4O96015 105 aa9.39□□□□□ -0.91
CLN3-201ENST00000333496 SMIM11BQ8TCY0 68 aa9.39□□□□□ -0.91
CLN3-201ENST00000333496 BAALC-AS2P0C853 105 aa9.38□□□□□ -0.91
CLN3-201ENST00000333496 FAM218AQ96MZ4 157 aa9.38□□□□□ -0.91
CLN3-201ENST00000333496 ANAPC11Q9NYG5 84 aa9.38□□□□□ -0.91
CLN3-201ENST00000333496 TRBV10-3A0A0K0K1G6 114 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms