RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 UBE2D1P51668 147 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 HBBP68871 147 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 ERHP84090 104 aaKnown RBP1.34□□□□□ -2.19
HMGB1-201ENST00000326004 RHOHQ15669 191 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 ATXN8Q156A1 80 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 SPANXN5Q5MJ07 72 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 LINC01590Q5TEZ4 76 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 LYPD5Q6UWN5 251 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 SOSTDC1Q6X4U4 206 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 NDUFA11Q86Y39 141 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 Q8N8P6 123 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 LINC01600Q96MT4 127 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 LHFPL6Q9Y693 200 aa1.34□□□□□ -2.19
HMGB1-201ENST00000326004 ANAPC1Q9H1A4 1944 aa1.34□□□□□ -2.2
HMGB1-201ENST00000326004 HECTD4Q9Y4D8 3996 aa1.34□□□□□ -2.2
HMGB1-201ENST00000326004 FSIP2Q5CZC0 6907 aa1.34□□□□□ -2.2
HMGB1-201ENST00000326004 TRGV4A0A0C4DH28 118 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 IGKV3D-7A0A0C4DH55 119 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 A0A0G2JQZ4 141 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 TRBV27A0A0K0K1C4 114 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 HIGD1CA8MV81 97 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 NDUFB3O43676 98 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 HBDP02042 147 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 IFI6P09912 130 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 EDDM3BP56851 147 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 UBE2BP63146 152 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 ZNF818PQ6ZRF7 136 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 C20orf197Q8N268 126 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 Q8N2B8 174 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 NPCDR1Q9BY65 106 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 BPESC1Q9GZL8 116 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 PRO1854Q9UHT4 67 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 PLCE1Q9P212 2302 aa1.33□□□□□ -2.2
HMGB1-201ENST00000326004 CSMD3Q7Z407 3707 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 FRAS1Q86XX4 4008 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 A0A087WVE0 104 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 TMEM30CPA0ZSE6 113 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 IBA57-AS1B1ANH7 110 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 E7EUB6 86 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 H7BZZ5 65 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 NDUFA3O95167 84 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 HMGN2P05204 90 aaKnown RBP1.32□□□□□ -2.2
HMGB1-201ENST00000326004 BLCAPP62952 87 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 NNATQ16517 81 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 TPRXLQ17RH7 258 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 Q6JHZ5 121 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 Q6ZQT0 140 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 Q6ZTI0 123 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 FAM216BQ8N7L0 139 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 SPTSSAQ969W0 71 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 TIMM21Q9BVV7 248 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 R4GMQ9 66 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 LYSTQ99698 3801 aa1.32□□□□□ -2.2
HMGB1-201ENST00000326004 IGKV1D-42A0A075B6H8 117 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 TRAV23DV6A0A075B6W5 121 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 A0A096LNT2 108 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 ZNF815PA8K554 130 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 DEFB108AA8MXU0 73 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 F8WEM9 126 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 M0R135 149 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 IGHV3-33P01772 117 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 PLNP26678 52 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 CKS2P33552 79 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 ATP5EP56381 51 aaPredicted RBP1.31□□□□□ -2.2
HMGB1-201ENST00000326004 C9orf163Q8N9P6 203 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 TMEM263Q8WUH6 116 aaKnown RBP1.31□□□□□ -2.2
HMGB1-201ENST00000326004 DYNLRB1Q9NP97 96 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 MRPL35Q9NZE8 188 aaKnown RBP1.31□□□□□ -2.2
HMGB1-201ENST00000326004 SNURFQ9Y675 71 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 DNAH9Q9NYC9 4486 aa1.31□□□□□ -2.2
HMGB1-201ENST00000326004 WNK2Q9Y3S1 2297 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 IGLV3-9A0A075B6K5 115 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.3□□□□□ -2.2
HMGB1-201ENST00000326004 PIGBOS1A0A0B4J2F0 54 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 CLPSL1A2RUU4 121 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 D6R8Y8 96 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 IGHV3-30P01768 117 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 TFF1P04155 84 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 IGHV3-30-5P0DP03 117 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 PLGLAQ15195 96 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 ESRGQ1W209 222 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 SPINK9Q5DT21 86 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 LINC00322Q6ZN03 302 aaPredicted RBP1.3□□□□□ -2.2
HMGB1-201ENST00000326004 C7orf65Q6ZTY9 151 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 LINC00269Q8N2A0 174 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 SPTSSBQ8NFR3 76 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 SPACA4Q8TDM5 124 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 CLEC2BQ92478 149 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 TMEM167BQ9NRX6 74 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 UBE2D4Q9Y2X8 147 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 FAT4Q6V0I7 4981 aa1.3□□□□□ -2.2
HMGB1-201ENST00000326004 FLG2Q5D862 2391 aaPredicted RBP1.29□□□□□ -2.2
HMGB1-201ENST00000326004 TRAV13-2A0A0B4J235 113 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 TRAV3A0A0B4J244 114 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 TRAV12-3A0A0B4J271 114 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 A0A0J9YY99 117 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 TRBV30A0A0K0K1B3 111 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 A0A1B0GUT8 65 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 A6NN06 94 aa1.29□□□□□ -2.2
HMGB1-201ENST00000326004 COX6CP09669 75 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms