RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 C14orf177Q52M58 125 aa11.78□□□□□ -0.52
USP39-201ENST00000323701 IGKV2-24A0A0C4DH68 120 aa11.78□□□□□ -0.52
USP39-201ENST00000323701 SMIM20Q8N5G0 67 aa11.78□□□□□ -0.52
USP39-201ENST00000323701 ACYP1P07311 99 aa11.77□□□□□ -0.53
USP39-201ENST00000323701 FAM19A5Q7Z5A7 132 aaPredicted RBP11.77□□□□□ -0.53
USP39-201ENST00000323701 PLA2G2DQ9UNK4 145 aa11.77□□□□□ -0.53
USP39-201ENST00000323701 Q8N814 137 aa11.76□□□□□ -0.53
USP39-201ENST00000323701 NKAPP1Q8N9T2 125 aa11.76□□□□□ -0.53
USP39-201ENST00000323701 IMUPQ9GZP8 106 aa11.76□□□□□ -0.53
USP39-201ENST00000323701 A0A087WTM6 91 aa11.75□□□□□ -0.53
USP39-201ENST00000323701 ZNF73O43830 326 aaPredicted RBP11.75□□□□□ -0.53
USP39-201ENST00000323701 CHTF8P0CG12 524 aa11.75□□□□□ -0.53
USP39-201ENST00000323701 RPL37AP8A6NKH3 93 aa11.74□□□□□ -0.53
USP39-201ENST00000323701 C16orf90A8MZG2 172 aa11.74□□□□□ -0.53
USP39-201ENST00000323701 C9orf163Q8N9P6 203 aa11.74□□□□□ -0.53
USP39-201ENST00000323701 A0A1W2PNN7 141 aa11.73□□□□□ -0.53
USP39-201ENST00000323701 IGLV5-37A0A075B6J1 123 aa11.72□□□□□ -0.53
USP39-201ENST00000323701 DNAH11Q96DT5 4516 aa11.72□□□□□ -0.53
USP39-201ENST00000323701 LINC00575Q6W349 94 aa11.72□□□□□ -0.53
USP39-201ENST00000323701 LINC00167Q96N53 147 aa11.72□□□□□ -0.53
USP39-201ENST00000323701 SACSQ9NZJ4 4579 aa11.72□□□□□ -0.53
USP39-201ENST00000323701 PANO1I0J062 215 aa11.71□□□□□ -0.53
USP39-201ENST00000323701 C1orf134Q5TEV5 83 aa11.71□□□□□ -0.53
USP39-201ENST00000323701 DIRC1Q969H9 104 aa11.71□□□□□ -0.53
USP39-201ENST00000323701 SDIM1Q6ZPB5 146 aa11.71□□□□□ -0.54
USP39-201ENST00000323701 C3orf84H3BNL1 204 aa11.7□□□□□ -0.54
USP39-201ENST00000323701 DNAL4O96015 105 aa11.7□□□□□ -0.54
USP39-201ENST00000323701 FAT2Q9NYQ8 4349 aa11.7□□□□□ -0.54
USP39-201ENST00000323701 KCNQ1DNQ9H478 68 aa11.69□□□□□ -0.54
USP39-201ENST00000323701 SMCR5Q8TEV8 140 aa11.69□□□□□ -0.54
USP39-201ENST00000323701 IGLV1-50A0A075B6I6 118 aa11.68□□□□□ -0.54
USP39-201ENST00000323701 FAM236AA0A1B0GUQ0 79 aa11.68□□□□□ -0.54
USP39-201ENST00000323701 FAM236BA0A1B0GV22 79 aa11.68□□□□□ -0.54
USP39-201ENST00000323701 MRPL55Q7Z7F7 128 aaKnown RBP11.68□□□□□ -0.54
USP39-201ENST00000323701 ELOF1P60002 83 aaKnown RBP11.68□□□□□ -0.54
USP39-201ENST00000323701 LINC00643Q86TS7 51 aa11.68□□□□□ -0.54
USP39-201ENST00000323701 COX7BP24311 80 aa11.66□□□□□ -0.54
USP39-201ENST00000323701 DNAH5Q8TE73 4624 aa11.65□□□□□ -0.54
USP39-201ENST00000323701 hADV29S1A0JD25 119 aa11.65□□□□□ -0.54
USP39-201ENST00000323701 TNP2Q05952 138 aa11.65□□□□□ -0.54
USP39-201ENST00000323701 A0A1B0GX51 115 aa11.64□□□□□ -0.55
USP39-201ENST00000323701 LINC00528Q8N1L1 170 aa11.64□□□□□ -0.55
USP39-201ENST00000323701 PKD1P98161 4303 aa11.63□□□□□ -0.55
USP39-201ENST00000323701 KRTAP4-16G5E9R7 235 aaPredicted RBP11.63□□□□□ -0.55
USP39-201ENST00000323701 ORMDL1Q9P0S3 153 aa11.63□□□□□ -0.55
USP39-201ENST00000323701 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.63□□□□□ -0.55
USP39-201ENST00000323701 TRBV7-6A0A0J9YX20 115 aa11.62□□□□□ -0.55
USP39-201ENST00000323701 KRTAP11-1Q8IUC1 163 aa11.62□□□□□ -0.55
USP39-201ENST00000323701 C3orf22Q8N5N4 141 aa11.62□□□□□ -0.55
USP39-201ENST00000323701 RTL8CO15255 209 aa11.62□□□□□ -0.55
USP39-201ENST00000323701 INAFM2P0DMQ5 153 aa11.61□□□□□ -0.55
USP39-201ENST00000323701 Q6ZQY7 126 aa11.61□□□□□ -0.55
USP39-201ENST00000323701 DNAH8Q96JB1 4490 aa11.61□□□□□ -0.55
USP39-201ENST00000323701 GAGE2AQ6NT46 116 aa11.61□□□□□ -0.55
USP39-201ENST00000323701 SRRM2Q9UQ35 2752 aaKnown RBP11.61□□□□□ -0.55
USP39-201ENST00000323701 UQCRQO14949 82 aa11.6□□□□□ -0.55
USP39-201ENST00000323701 SPRR1AP35321 89 aa11.6□□□□□ -0.55
USP39-201ENST00000323701 PHF5AQ7RTV0 110 aaKnown RBP11.6□□□□□ -0.55
USP39-201ENST00000323701 OBSCN-AS1Q96MR7 158 aa11.6□□□□□ -0.55
USP39-201ENST00000323701 C14orf132Q9NPU4 83 aa11.6□□□□□ -0.55
USP39-201ENST00000323701 C9orf153Q5TBE3 101 aa11.6□□□□□ -0.55
USP39-201ENST00000323701 PRYO14603 147 aa11.58□□□□□ -0.56
USP39-201ENST00000323701 Q9BRP9 147 aa11.57□□□□□ -0.56
USP39-201ENST00000323701 SPACA4Q8TDM5 124 aa11.56□□□□□ -0.56
USP39-201ENST00000323701 Q6ZRX8 168 aa11.55□□□□□ -0.56
USP39-201ENST00000323701 KRTAP10-2P60368 255 aa11.55□□□□□ -0.56
USP39-201ENST00000323701 REG3GQ6UW15 175 aa11.54□□□□□ -0.56
USP39-201ENST00000323701 IGLV5-52A0A0A0MRZ9 124 aa11.54□□□□□ -0.56
USP39-201ENST00000323701 TMEM256-PLSCR3K7ERE1 68 aa11.53□□□□□ -0.56
USP39-201ENST00000323701 DPH3Q96FX2 82 aa11.53□□□□□ -0.56
USP39-201ENST00000323701 LINC00474Q9P2X8 69 aa11.53□□□□□ -0.56
USP39-201ENST00000323701 KMT2CQ8NEZ4 4911 aaKnown RBP11.53□□□□□ -0.56
USP39-201ENST00000323701 ETDCA0A1B0GVM5 59 aa11.52□□□□□ -0.56
USP39-201ENST00000323701 COX7CP15954 63 aa11.52□□□□□ -0.56
USP39-201ENST00000323701 HIST1H4AP62805 103 aaKnown RBP11.52□□□□□ -0.57
USP39-201ENST00000323701 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.51□□□□□ -0.57
USP39-201ENST00000323701 ERC2-IT1O76042 136 aa11.51□□□□□ -0.57
USP39-201ENST00000323701 PKIGQ9Y2B9 76 aa11.5□□□□□ -0.57
USP39-201ENST00000323701 ATOX1O00244 68 aa11.5□□□□□ -0.57
USP39-201ENST00000323701 PKHD1P08F94 4074 aa11.49□□□□□ -0.57
USP39-201ENST00000323701 UBE2BP63146 152 aa11.49□□□□□ -0.57
USP39-201ENST00000323701 EPM2AB3EWF7 344 aa11.48□□□□□ -0.57
USP39-201ENST00000323701 CRYGAP11844 174 aa11.48□□□□□ -0.57
USP39-201ENST00000323701 PRLHP81277 87 aa11.48□□□□□ -0.57
USP39-201ENST00000323701 LINC00846Q9NV44 126 aa11.48□□□□□ -0.57
USP39-201ENST00000323701 RYR2Q92736 4967 aa11.48□□□□□ -0.57
USP39-201ENST00000323701 ST20-AS1Q8NBB2 130 aa11.47□□□□□ -0.57
USP39-201ENST00000323701 LINC01547P58512 204 aaPredicted RBP11.46□□□□□ -0.57
USP39-201ENST00000323701 FAM19A1Q7Z5A9 133 aa11.45□□□□□ -0.58
USP39-201ENST00000323701 DEFB105AQ8NG35 78 aa11.45□□□□□ -0.58
USP39-201ENST00000323701 DHRS4-AS1Q9P1J3 65 aa11.45□□□□□ -0.58
USP39-201ENST00000323701 J3KT08 172 aa11.45□□□□□ -0.58
USP39-201ENST00000323701 LAMTOR3Q9UHA4 124 aa11.44□□□□□ -0.58
USP39-201ENST00000323701 Q8N377 158 aa11.43□□□□□ -0.58
USP39-201ENST00000323701 FAM30AQ9NZY2 134 aa11.43□□□□□ -0.58
USP39-201ENST00000323701 CCKP06307 115 aa11.43□□□□□ -0.58
USP39-201ENST00000323701 Q6JHZ5 121 aa11.43□□□□□ -0.58
USP39-201ENST00000323701 LCE6AA0A183 80 aa11.41□□□□□ -0.58
USP39-201ENST00000323701 RPS28P62857 69 aaKnown RBP11.41□□□□□ -0.58
USP39-201ENST00000323701 PLAC8Q9NZF1 115 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms