RNA–Protein interactions for RNA: ENST00000610401.4

SSBP3-216, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 3,168 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-216ENST00000610401 FAM19A5Q7Z5A7 132 aaPredicted RBP13.93□□□□□ -0.18
SSBP3-216ENST00000610401 SPAG11BQ08648 103 aa13.93□□□□□ -0.18
SSBP3-216ENST00000610401 HIGD2BQ4VC39 106 aa13.92□□□□□ -0.18
SSBP3-216ENST00000610401 CD164L2Q6UWJ8 174 aa13.92□□□□□ -0.18
SSBP3-216ENST00000610401 CMC4P56277 68 aaPredicted RBP13.91□□□□□ -0.18
SSBP3-216ENST00000610401 Q6ZQY7 126 aa13.91□□□□□ -0.18
SSBP3-216ENST00000610401 C20orf197Q8N268 126 aa13.91□□□□□ -0.18
SSBP3-216ENST00000610401 SERP2Q8N6R1 65 aa13.91□□□□□ -0.18
SSBP3-216ENST00000610401 CYSRT1A8MQ03 144 aa13.91□□□□□ -0.18
SSBP3-216ENST00000610401 TMEM256-PLSCR3K7ERE1 68 aa13.91□□□□□ -0.18
SSBP3-216ENST00000610401 OBSCN-AS1Q96MR7 158 aa13.9□□□□□ -0.18
SSBP3-216ENST00000610401 FBN1P35555 2871 aaKnown RBP13.9□□□□□ -0.18
SSBP3-216ENST00000610401 NOTCH1P46531 2555 aa13.9□□□□□ -0.18
SSBP3-216ENST00000610401 IGHV4-28A0A0C4DH34 117 aa13.89□□□□□ -0.19
SSBP3-216ENST00000610401 LY6G6DO95868 133 aa13.89□□□□□ -0.19
SSBP3-216ENST00000610401 UPK3BQ9BT76 320 aa13.89□□□□□ -0.19
SSBP3-216ENST00000610401 UBL5Q9BZL1 73 aa13.89□□□□□ -0.19
SSBP3-216ENST00000610401 A0A1B0GUV1 79 aa13.88□□□□□ -0.19
SSBP3-216ENST00000610401 KRTAP1-1Q07627 177 aa13.88□□□□□ -0.19
SSBP3-216ENST00000610401 CRYGAP11844 174 aa13.87□□□□□ -0.19
SSBP3-216ENST00000610401 RBM3P98179 157 aaKnown RBP13.87□□□□□ -0.19
SSBP3-216ENST00000610401 J3KT08 172 aa13.86□□□□□ -0.19
SSBP3-216ENST00000610401 MAST4O15021 2626 aa13.86□□□□□ -0.19
SSBP3-216ENST00000610401 JMJD7-PLA2G4BH0Y9G9 81 aa13.85□□□□□ -0.19
SSBP3-216ENST00000610401 TRBV10-3A0A0K0K1G6 114 aa13.84□□□□□ -0.19
SSBP3-216ENST00000610401 SNURFQ9Y675 71 aa13.83□□□□□ -0.19
SSBP3-216ENST00000610401 NSD1Q96L73 2696 aaPredicted RBP13.83□□□□□ -0.2
SSBP3-216ENST00000610401 LINC00575Q6W349 94 aa13.83□□□□□ -0.2
SSBP3-216ENST00000610401 FLNBO75369 2602 aaKnown RBP13.82□□□□□ -0.2
SSBP3-216ENST00000610401 TENM3Q9P273 2699 aa13.82□□□□□ -0.2
SSBP3-216ENST00000610401 OXTP01178 125 aa13.81□□□□□ -0.2
SSBP3-216ENST00000610401 STAB1Q9NY15 2570 aa13.8□□□□□ -0.2
SSBP3-216ENST00000610401 DPH3Q96FX2 82 aa13.79□□□□□ -0.2
SSBP3-216ENST00000610401 Q8N9L7 120 aa13.78□□□□□ -0.2
SSBP3-216ENST00000610401 TRAV10A0A0B4J240 114 aa13.78□□□□□ -0.2
SSBP3-216ENST00000610401 C16orf95Q9H693 158 aa13.77□□□□□ -0.21
SSBP3-216ENST00000610401 NBEAL1Q6ZS30 2694 aa13.76□□□□□ -0.21
SSBP3-216ENST00000610401 C4orf26Q17RF5 130 aa13.75□□□□□ -0.21
SSBP3-216ENST00000610401 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.75□□□□□ -0.21
SSBP3-216ENST00000610401 DEFB105AQ8NG35 78 aa13.75□□□□□ -0.21
SSBP3-216ENST00000610401 RETNQ9HD89 108 aa13.75□□□□□ -0.21
SSBP3-216ENST00000610401 Q6ZQT0 140 aa13.75□□□□□ -0.21
SSBP3-216ENST00000610401 NDUFC2O95298 119 aa13.74□□□□□ -0.21
SSBP3-216ENST00000610401 C6orf48Q9UBA6 75 aa13.74□□□□□ -0.21
SSBP3-216ENST00000610401 LINC01547P58512 204 aaPredicted RBP13.73□□□□□ -0.21
SSBP3-216ENST00000610401 COX17Q14061 63 aa13.73□□□□□ -0.21
SSBP3-216ENST00000610401 Q6ZVQ6 151 aa13.73□□□□□ -0.21
SSBP3-216ENST00000610401 LINC00612Q8N6U2 182 aa13.73□□□□□ -0.21
SSBP3-216ENST00000610401 COL6A5A8TX70 2615 aa13.73□□□□□ -0.21
SSBP3-216ENST00000610401 WFDC10BQ8IUB3 73 aa13.72□□□□□ -0.21
SSBP3-216ENST00000610401 INAFM1C9JVW0 142 aa13.71□□□□□ -0.21
SSBP3-216ENST00000610401 ZNF561-AS1K7EIQ3 104 aa13.71□□□□□ -0.21
SSBP3-216ENST00000610401 HRCT1Q6UXD1 115 aa13.71□□□□□ -0.21
SSBP3-216ENST00000610401 LINC00167Q96N53 147 aa13.71□□□□□ -0.21
SSBP3-216ENST00000610401 CAMK2N2Q96S95 79 aa13.71□□□□□ -0.21
SSBP3-216ENST00000610401 LYRM9A8MSI8 78 aa13.71□□□□□ -0.22
SSBP3-216ENST00000610401 SMIM9A6NGZ8 99 aa13.7□□□□□ -0.22
SSBP3-216ENST00000610401 CSMD3Q7Z407 3707 aa13.7□□□□□ -0.22
SSBP3-216ENST00000610401 RMI2Q96E14 147 aa13.69□□□□□ -0.22
SSBP3-216ENST00000610401 TMEM258P61165 79 aa13.69□□□□□ -0.22
SSBP3-216ENST00000610401 DIRC1Q969H9 104 aa13.69□□□□□ -0.22
SSBP3-216ENST00000610401 ZNF73O43830 326 aaPredicted RBP13.67□□□□□ -0.22
SSBP3-216ENST00000610401 SPART-AS1P0CW21 52 aa13.67□□□□□ -0.22
SSBP3-216ENST00000610401 C3orf84H3BNL1 204 aa13.66□□□□□ -0.22
SSBP3-216ENST00000610401 Q8NAQ8 132 aa13.66□□□□□ -0.22
SSBP3-216ENST00000610401 MUC7Q8TAX7 377 aa13.65□□□□□ -0.23
SSBP3-216ENST00000610401 IGLV6-57P01721 117 aa13.64□□□□□ -0.23
SSBP3-216ENST00000610401 APOC4P55056 127 aa13.64□□□□□ -0.23
SSBP3-216ENST00000610401 LELP1Q5T871 98 aa13.64□□□□□ -0.23
SSBP3-216ENST00000610401 IGHV4-30-4P0DP06 118 aa13.64□□□□□ -0.23
SSBP3-216ENST00000610401 COX7BP24311 80 aa13.63□□□□□ -0.23
SSBP3-216ENST00000610401 Q6ZRU5 148 aa13.63□□□□□ -0.23
SSBP3-216ENST00000610401 C9orf66Q5T8R8 295 aa13.63□□□□□ -0.23
SSBP3-216ENST00000610401 TM2D3Q9BRN9 247 aa13.63□□□□□ -0.23
SSBP3-216ENST00000610401 LYPD5Q6UWN5 251 aa13.62□□□□□ -0.23
SSBP3-216ENST00000610401 ANK2Q01484 3957 aa13.61□□□□□ -0.23
SSBP3-216ENST00000610401 OXLD1Q5BKU9 147 aa13.61□□□□□ -0.23
SSBP3-216ENST00000610401 IGKV2D-24A0A075B6R9 120 aa13.61□□□□□ -0.23
SSBP3-216ENST00000610401 ATP5EP2Q5VTU8 51 aa13.59□□□□□ -0.23
SSBP3-216ENST00000610401 A0A0J9YWU9 116 aa13.58□□□□□ -0.24
SSBP3-216ENST00000610401 F8WEM9 126 aa13.57□□□□□ -0.24
SSBP3-216ENST00000610401 Q6ZTC4 211 aa13.57□□□□□ -0.24
SSBP3-216ENST00000610401 RPL37AP8A6NKH3 93 aa13.57□□□□□ -0.24
SSBP3-216ENST00000610401 FAM236DA0A1B0GTK5 79 aa13.57□□□□□ -0.24
SSBP3-216ENST00000610401 BPY2O14599 106 aa13.57□□□□□ -0.24
SSBP3-216ENST00000610401 FAM236CP0DP71 79 aa13.57□□□□□ -0.24
SSBP3-216ENST00000610401 KPRPQ5T749 579 aaPredicted RBP13.57□□□□□ -0.24
SSBP3-216ENST00000610401 MIFP14174 115 aa13.53□□□□□ -0.24
SSBP3-216ENST00000610401 PRR34Q9NV39 138 aa13.53□□□□□ -0.24
SSBP3-216ENST00000610401 C5orf47Q569G3 176 aa13.53□□□□□ -0.24
SSBP3-216ENST00000610401 Q6ZRP5 223 aa13.53□□□□□ -0.24
SSBP3-216ENST00000610401 LOC110117498A0A087WWA1 95 aa13.52□□□□□ -0.24
SSBP3-216ENST00000610401 H7BZZ5 65 aa13.52□□□□□ -0.25
SSBP3-216ENST00000610401 SRRM2Q9UQ35 2752 aaKnown RBP13.51□□□□□ -0.25
SSBP3-216ENST00000610401 VPREB1P12018 145 aa13.51□□□□□ -0.25
SSBP3-216ENST00000610401 RPS28P62857 69 aaKnown RBP13.51□□□□□ -0.25
SSBP3-216ENST00000610401 TRAV7A0A075B6U4 112 aa13.5□□□□□ -0.25
SSBP3-216ENST00000610401 ELOF1P60002 83 aaKnown RBP13.48□□□□□ -0.25
SSBP3-216ENST00000610401 Q5XG85 94 aa13.48□□□□□ -0.25
SSBP3-216ENST00000610401 C1orf43Q9BWL3 253 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms