RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 C22orf24Q9Y442 160 aa9.61□□□□□ -0.87
VRK3-217ENST00000599538 ZNF561-AS1K7EIQ3 104 aa9.6□□□□□ -0.87
VRK3-217ENST00000599538 C15orf53Q8NAA6 179 aa9.6□□□□□ -0.87
VRK3-217ENST00000599538 XAGE1AQ9HD64 81 aa9.6□□□□□ -0.87
VRK3-217ENST00000599538 GVQW2A0A096LPI5 108 aaPredicted RBP9.59□□□□□ -0.87
VRK3-217ENST00000599538 Q6ZRU5 148 aa9.59□□□□□ -0.87
VRK3-217ENST00000599538 DNAH9Q9NYC9 4486 aa9.59□□□□□ -0.87
VRK3-217ENST00000599538 CAMK2N2Q96S95 79 aa9.59□□□□□ -0.87
VRK3-217ENST00000599538 BAALC-AS2P0C853 105 aa9.58□□□□□ -0.88
VRK3-217ENST00000599538 LYSTQ99698 3801 aa9.58□□□□□ -0.88
VRK3-217ENST00000599538 CASC10Q5T4H9 136 aa9.56□□□□□ -0.88
VRK3-217ENST00000599538 H0YGX0 51 aa9.56□□□□□ -0.88
VRK3-217ENST00000599538 LECT2O14960 151 aa9.56□□□□□ -0.88
VRK3-217ENST00000599538 TMEM126AQ9H061 195 aa9.56□□□□□ -0.88
VRK3-217ENST00000599538 RPL18AQ02543 176 aaKnown RBP9.55□□□□□ -0.88
VRK3-217ENST00000599538 SIGMAR1Q99720 223 aa9.55□□□□□ -0.88
VRK3-217ENST00000599538 SLPIP03973 132 aa9.55□□□□□ -0.88
VRK3-217ENST00000599538 DNAH1Q9P2D7 4330 aa9.54□□□□□ -0.88
VRK3-217ENST00000599538 XGP55808 180 aa9.53□□□□□ -0.88
VRK3-217ENST00000599538 MUC7Q8TAX7 377 aa9.53□□□□□ -0.88
VRK3-217ENST00000599538 C6orf99Q4VX62 202 aa9.53□□□□□ -0.88
VRK3-217ENST00000599538 S100A7L2Q5SY68 101 aa9.53□□□□□ -0.88
VRK3-217ENST00000599538 C9orf129Q5T035 196 aaKnown RBP9.53□□□□□ -0.88
VRK3-217ENST00000599538 C2orf48Q96LS8 159 aa9.52□□□□□ -0.89
VRK3-217ENST00000599538 DNAL4O96015 105 aa9.52□□□□□ -0.89
VRK3-217ENST00000599538 MT-ATP8P03928 68 aa9.52□□□□□ -0.89
VRK3-217ENST00000599538 GAGE2EQ4V326 116 aa9.51□□□□□ -0.89
VRK3-217ENST00000599538 GAGE2DQ9UEU5 116 aa9.51□□□□□ -0.89
VRK3-217ENST00000599538 TENM2Q9NT68 2774 aa9.51□□□□□ -0.89
VRK3-217ENST00000599538 CSMD3Q7Z407 3707 aa9.5□□□□□ -0.89
VRK3-217ENST00000599538 Q6ZRP5 223 aa9.5□□□□□ -0.89
VRK3-217ENST00000599538 IGLV6-57P01721 117 aa9.5□□□□□ -0.89
VRK3-217ENST00000599538 TRBV10-3A0A0K0K1G6 114 aa9.49□□□□□ -0.89
VRK3-217ENST00000599538 NDUFC2-KCTD14E9PQ53 114 aa9.49□□□□□ -0.89
VRK3-217ENST00000599538 SYCNQ0VAF6 134 aa9.49□□□□□ -0.89
VRK3-217ENST00000599538 VPREB1P12018 145 aa9.49□□□□□ -0.89
VRK3-217ENST00000599538 B9D2Q9BPU9 175 aa9.49□□□□□ -0.89
VRK3-217ENST00000599538 UPK3BQ9BT76 320 aa9.49□□□□□ -0.89
VRK3-217ENST00000599538 USP17L23D6RBM5 183 aa9.47□□□□□ -0.89
VRK3-217ENST00000599538 KRTAP1-5Q9BYS1 174 aa9.47□□□□□ -0.89
VRK3-217ENST00000599538 Q8N814 137 aa9.47□□□□□ -0.89
VRK3-217ENST00000599538 DNAH10Q8IVF4 4471 aa9.45□□□□□ -0.9
VRK3-217ENST00000599538 A0A1B0GV72 72 aa9.45□□□□□ -0.9
VRK3-217ENST00000599538 LINC00167Q96N53 147 aa9.45□□□□□ -0.9
VRK3-217ENST00000599538 DNAH7Q8WXX0 4024 aa9.45□□□□□ -0.9
VRK3-217ENST00000599538 APLNQ9ULZ1 77 aa9.44□□□□□ -0.9
VRK3-217ENST00000599538 SCGB1A1P11684 91 aa9.44□□□□□ -0.9
VRK3-217ENST00000599538 LINC00575Q6W349 94 aa9.44□□□□□ -0.9
VRK3-217ENST00000599538 ORMDL1Q9P0S3 153 aa9.43□□□□□ -0.9
VRK3-217ENST00000599538 PRKDCP78527 4128 aaKnown RBP9.43□□□□□ -0.9
VRK3-217ENST00000599538 TRAV23DV6A0A075B6W5 121 aa9.43□□□□□ -0.9
VRK3-217ENST00000599538 C14orf132Q9NPU4 83 aa9.42□□□□□ -0.9
VRK3-217ENST00000599538 A0A1B0GX51 115 aa9.41□□□□□ -0.9
VRK3-217ENST00000599538 F8WDY8 70 aa9.41□□□□□ -0.9
VRK3-217ENST00000599538 SERTAD4-AS1Q5TG53 156 aa9.41□□□□□ -0.9
VRK3-217ENST00000599538 DNHD1Q96M86 4753 aa9.41□□□□□ -0.9
VRK3-217ENST00000599538 FAM240AA0A1B0GVK7 77 aa9.41□□□□□ -0.9
VRK3-217ENST00000599538 OBSCN-AS1Q96MR7 158 aa9.41□□□□□ -0.9
VRK3-217ENST00000599538 DYNC2H1Q8NCM8 4307 aaKnown RBP9.4□□□□□ -0.9
VRK3-217ENST00000599538 M0R378 163 aa9.4□□□□□ -0.9
VRK3-217ENST00000599538 TTC32Q5I0X7 151 aa9.4□□□□□ -0.9
VRK3-217ENST00000599538 ZNF73O43830 326 aaPredicted RBP9.4□□□□□ -0.91
VRK3-217ENST00000599538 RMI2Q96E14 147 aa9.4□□□□□ -0.91
VRK3-217ENST00000599538 PLECQ15149 4684 aaKnown RBP9.39□□□□□ -0.91
VRK3-217ENST00000599538 hADV29S1A0JD25 119 aa9.39□□□□□ -0.91
VRK3-217ENST00000599538 MEGF8Q7Z7M0 2845 aa9.39□□□□□ -0.91
VRK3-217ENST00000599538 SMCR5Q8TEV8 140 aa9.38□□□□□ -0.91
VRK3-217ENST00000599538 DIRC1Q969H9 104 aa9.38□□□□□ -0.91
VRK3-217ENST00000599538 FAM168BA1KXE4 195 aa9.38□□□□□ -0.91
VRK3-217ENST00000599538 INAFM2P0DMQ5 153 aa9.38□□□□□ -0.91
VRK3-217ENST00000599538 GAGE2AQ6NT46 116 aa9.38□□□□□ -0.91
VRK3-217ENST00000599538 UBE2DNLQ8IWF7 75 aa9.38□□□□□ -0.91
VRK3-217ENST00000599538 TLX1NBP0CAT3 122 aa9.37□□□□□ -0.91
VRK3-217ENST00000599538 KRTAP7-1Q8IUC3 87 aa9.36□□□□□ -0.91
VRK3-217ENST00000599538 Q6ZQY7 126 aa9.35□□□□□ -0.91
VRK3-217ENST00000599538 TMEM256-PLSCR3K7ERE1 68 aa9.35□□□□□ -0.91
VRK3-217ENST00000599538 SNCGO76070 127 aa9.35□□□□□ -0.91
VRK3-217ENST00000599538 ELOF1P60002 83 aaKnown RBP9.35□□□□□ -0.91
VRK3-217ENST00000599538 COX7BP24311 80 aa9.34□□□□□ -0.91
VRK3-217ENST00000599538 GAGE2BQ13066 116 aa9.34□□□□□ -0.91
VRK3-217ENST00000599538 C7orf33Q8WU49 177 aa9.34□□□□□ -0.91
VRK3-217ENST00000599538 STARD9Q9P2P6 4700 aa9.34□□□□□ -0.91
VRK3-217ENST00000599538 ACYP1P07311 99 aa9.33□□□□□ -0.92
VRK3-217ENST00000599538 NKAPP1Q8N9T2 125 aa9.33□□□□□ -0.92
VRK3-217ENST00000599538 RPL37AP8A6NKH3 93 aa9.31□□□□□ -0.92
VRK3-217ENST00000599538 NHLRC4P0CG21 123 aaPredicted RBP9.31□□□□□ -0.92
VRK3-217ENST00000599538 SDIM1Q6ZPB5 146 aa9.31□□□□□ -0.92
VRK3-217ENST00000599538 LINC00528Q8N1L1 170 aa9.31□□□□□ -0.92
VRK3-217ENST00000599538 PSCAO43653 123 aa9.3□□□□□ -0.92
VRK3-217ENST00000599538 KCNQ1DNQ9H478 68 aa9.29□□□□□ -0.92
VRK3-217ENST00000599538 PLA2G2DQ9UNK4 145 aa9.29□□□□□ -0.92
VRK3-217ENST00000599538 TRBV7-6A0A0J9YX20 115 aa9.29□□□□□ -0.92
VRK3-217ENST00000599538 NUPR2A6NF83 97 aa9.29□□□□□ -0.92
VRK3-217ENST00000599538 JMJD7-PLA2G4BH0Y9G9 81 aa9.29□□□□□ -0.92
VRK3-217ENST00000599538 LINC00846Q9NV44 126 aa9.29□□□□□ -0.92
VRK3-217ENST00000599538 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.28□□□□□ -0.92
VRK3-217ENST00000599538 FAM19A5Q7Z5A7 132 aaPredicted RBP9.28□□□□□ -0.92
VRK3-217ENST00000599538 LOC107984640A0A0U1RRK4 108 aa9.28□□□□□ -0.92
VRK3-217ENST00000599538 LAMTOR3Q9UHA4 124 aa9.27□□□□□ -0.93
VRK3-217ENST00000599538 CCKP06307 115 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms