RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 FAM74A3Q4VXF1 159 aa8.58□□□□□ -1.04
CLK3-217ENST00000566126 HMSDA8MTL9 139 aa8.57□□□□□ -1.04
CLK3-217ENST00000566126 PPBPP02775 128 aa8.57□□□□□ -1.04
CLK3-217ENST00000566126 IGLV5-45A0A087WSX0 123 aa8.56□□□□□ -1.04
CLK3-217ENST00000566126 PRYO14603 147 aa8.56□□□□□ -1.04
CLK3-217ENST00000566126 SPINK8P0C7L1 97 aa8.56□□□□□ -1.04
CLK3-217ENST00000566126 CEBPGP53567 150 aa8.56□□□□□ -1.04
CLK3-217ENST00000566126 C9orf153Q5TBE3 101 aa8.56□□□□□ -1.04
CLK3-217ENST00000566126 A0A1B0GW15 77 aa8.55□□□□□ -1.04
CLK3-217ENST00000566126 ERG28Q9UKR5 140 aa8.55□□□□□ -1.04
CLK3-217ENST00000566126 PRSS47A8MTI9 375 aa8.54□□□□□ -1.04
CLK3-217ENST00000566126 TMEM136Q6ZRR5 245 aa8.54□□□□□ -1.04
CLK3-217ENST00000566126 ORMDL3Q8N138 153 aa8.54□□□□□ -1.04
CLK3-217ENST00000566126 PRELID3AQ96N28 172 aa8.54□□□□□ -1.04
CLK3-217ENST00000566126 LIMD2Q9BT23 127 aa8.54□□□□□ -1.04
CLK3-217ENST00000566126 ETDCA0A1B0GVM5 59 aa8.53□□□□□ -1.04
CLK3-217ENST00000566126 SMIM7Q9BQ49 75 aa8.53□□□□□ -1.04
CLK3-217ENST00000566126 TINCRA0A1B0GVN0 87 aa8.52□□□□□ -1.05
CLK3-217ENST00000566126 SMIM27A0A1W2PRY6 76 aa8.52□□□□□ -1.05
CLK3-217ENST00000566126 F8W036 122 aa8.52□□□□□ -1.05
CLK3-217ENST00000566126 KCNQ1DNQ9H478 68 aa8.52□□□□□ -1.05
CLK3-217ENST00000566126 BATF3Q9NR55 127 aa8.52□□□□□ -1.05
CLK3-217ENST00000566126 PAPPA-AS1Q5QFB9 102 aa8.51□□□□□ -1.05
CLK3-217ENST00000566126 MRPL54Q6P161 138 aaKnown RBP8.51□□□□□ -1.05
CLK3-217ENST00000566126 A0A1B0GXF2 115 aa8.5□□□□□ -1.05
CLK3-217ENST00000566126 KRTAP10-10P60014 251 aa8.5□□□□□ -1.05
CLK3-217ENST00000566126 COX17Q14061 63 aa8.5□□□□□ -1.05
CLK3-217ENST00000566126 HRCT1Q6UXD1 115 aa8.5□□□□□ -1.05
CLK3-217ENST00000566126 Q8N8P6 123 aa8.49□□□□□ -1.05
CLK3-217ENST00000566126 B5MCH6 92 aa8.48□□□□□ -1.05
CLK3-217ENST00000566126 ORMDL2Q53FV1 153 aa8.48□□□□□ -1.05
CLK3-217ENST00000566126 Q9BRP9 147 aa8.48□□□□□ -1.05
CLK3-217ENST00000566126 CHTOPQ9Y3Y2 248 aaKnown RBP8.48□□□□□ -1.05
CLK3-217ENST00000566126 ZNF625Q96I27 306 aaPredicted RBP8.47□□□□□ -1.05
CLK3-217ENST00000566126 MAP1LC3AQ9H492 121 aa8.47□□□□□ -1.05
CLK3-217ENST00000566126 S100A8P05109 93 aa8.46□□□□□ -1.06
CLK3-217ENST00000566126 KIAA1644Q3SXP7 199 aa8.45□□□□□ -1.06
CLK3-217ENST00000566126 IGLV5-39A0A0G2JS06 123 aa8.43□□□□□ -1.06
CLK3-217ENST00000566126 C20orf202A1L168 122 aa8.43□□□□□ -1.06
CLK3-217ENST00000566126 LAMTOR2Q9Y2Q5 125 aa8.43□□□□□ -1.06
CLK3-217ENST00000566126 TRAV9-1A0A075B6T8 112 aa8.42□□□□□ -1.06
CLK3-217ENST00000566126 NCR3O14931 201 aa8.42□□□□□ -1.06
CLK3-217ENST00000566126 TOMM6Q96B49 74 aa8.42□□□□□ -1.06
CLK3-217ENST00000566126 MRPL18Q9H0U6 180 aaKnown RBP8.42□□□□□ -1.06
CLK3-217ENST00000566126 TRBV10-3A0A0K0K1G6 114 aa8.41□□□□□ -1.06
CLK3-217ENST00000566126 K7EMI3 77 aa8.41□□□□□ -1.06
CLK3-217ENST00000566126 ADCYAP1P18509 176 aa8.41□□□□□ -1.06
CLK3-217ENST00000566126 RPL23P62829 140 aaKnown RBP8.41□□□□□ -1.06
CLK3-217ENST00000566126 C1orf195Q5TG92 126 aa8.39□□□□□ -1.07
CLK3-217ENST00000566126 ERASQ7Z444 233 aa8.39□□□□□ -1.07
CLK3-217ENST00000566126 CST9LQ9H4G1 147 aa8.39□□□□□ -1.07
CLK3-217ENST00000566126 H3BRM9 83 aa8.38□□□□□ -1.07
CLK3-217ENST00000566126 Q6ZRX8 168 aa8.38□□□□□ -1.07
CLK3-217ENST00000566126 ST20-AS1Q8NBB2 130 aa8.37□□□□□ -1.07
CLK3-217ENST00000566126 SCGB3A1Q96QR1 104 aa8.37□□□□□ -1.07
CLK3-217ENST00000566126 SRP19P09132 144 aaKnown RBP8.36□□□□□ -1.07
CLK3-217ENST00000566126 LINC00158P58513 81 aa8.36□□□□□ -1.07
CLK3-217ENST00000566126 ADIRFQ15847 76 aa8.36□□□□□ -1.07
CLK3-217ENST00000566126 BOD1L2Q8IYS8 172 aa8.36□□□□□ -1.07
CLK3-217ENST00000566126 A0A0U1RRA0 63 aa8.35□□□□□ -1.07
CLK3-217ENST00000566126 G0S2P27469 103 aa8.34□□□□□ -1.07
CLK3-217ENST00000566126 H7C2G1 150 aa8.33□□□□□ -1.08
CLK3-217ENST00000566126 NXT2Q9NPJ8 142 aaKnown RBP8.33□□□□□ -1.08
CLK3-217ENST00000566126 PMVKQ15126 192 aa8.32□□□□□ -1.08
CLK3-217ENST00000566126 Q5XG85 94 aa8.32□□□□□ -1.08
CLK3-217ENST00000566126 ATP5L2Q7Z4Y8 100 aa8.32□□□□□ -1.08
CLK3-217ENST00000566126 ATP11AUNQ6ZP68 121 aa8.31□□□□□ -1.08
CLK3-217ENST00000566126 SLC51BQ86UW2 128 aa8.31□□□□□ -1.08
CLK3-217ENST00000566126 ZNF22P17026 224 aaPredicted RBP8.3□□□□□ -1.08
CLK3-217ENST00000566126 LGALS3P17931 250 aaKnown RBP8.3□□□□□ -1.08
CLK3-217ENST00000566126 BLOC1S1P78537 153 aa8.3□□□□□ -1.08
CLK3-217ENST00000566126 CD164Q04900 197 aa8.3□□□□□ -1.08
CLK3-217ENST00000566126 IGLC3P0DOY3 106 aa8.29□□□□□ -1.08
CLK3-217ENST00000566126 S100A12P80511 92 aa8.29□□□□□ -1.08
CLK3-217ENST00000566126 SFTA2Q6UW10 78 aa8.28□□□□□ -1.08
CLK3-217ENST00000566126 ALKAL2Q6UX46 152 aa8.28□□□□□ -1.08
CLK3-217ENST00000566126 SMIM29Q86T20 159 aa8.28□□□□□ -1.08
CLK3-217ENST00000566126 MDN1Q9NU22 5596 aa8.27□□□□□ -1.08
CLK3-217ENST00000566126 SPRR1BP22528 89 aa8.27□□□□□ -1.09
CLK3-217ENST00000566126 NAT8Q9UHE5 227 aa8.27□□□□□ -1.09
CLK3-217ENST00000566126 SMIM13P0DJ93 91 aa8.25□□□□□ -1.09
CLK3-217ENST00000566126 DDTP30046 118 aa8.25□□□□□ -1.09
CLK3-217ENST00000566126 Q75L30 129 aa8.25□□□□□ -1.09
CLK3-217ENST00000566126 C20orf166-AS1Q96NR2 134 aa8.24□□□□□ -1.09
CLK3-217ENST00000566126 C5orf52A6NGY3 159 aa8.23□□□□□ -1.09
CLK3-217ENST00000566126 JOSD1Q15040 202 aaPredicted RBP8.23□□□□□ -1.09
CLK3-217ENST00000566126 MIR7-3HGQ8N6C7 128 aa8.23□□□□□ -1.09
CLK3-217ENST00000566126 KMT2DO14686 5537 aa8.22□□□□□ -1.09
CLK3-217ENST00000566126 TRBV20-1A0A075B6N2 111 aa8.22□□□□□ -1.09
CLK3-217ENST00000566126 Q1RN00 199 aa8.21□□□□□ -1.1
CLK3-217ENST00000566126 C9JQL5 133 aa8.2□□□□□ -1.1
CLK3-217ENST00000566126 ATP6V1G1O75348 118 aa8.2□□□□□ -1.1
CLK3-217ENST00000566126 SLC25A34Q6PIV7 304 aa8.2□□□□□ -1.1
CLK3-217ENST00000566126 LAMTOR3Q9UHA4 124 aa8.2□□□□□ -1.1
CLK3-217ENST00000566126 LINC01549A6NIU2 74 aa8.19□□□□□ -1.1
CLK3-217ENST00000566126 C10orf91Q5T1B1 145 aa8.18□□□□□ -1.1
CLK3-217ENST00000566126 PRO1933Q9H354 126 aa8.18□□□□□ -1.1
CLK3-217ENST00000566126 RGS21Q2M5E4 152 aa8.17□□□□□ -1.1
CLK3-217ENST00000566126 TRBV10-2A0A0K0K1G8 114 aa8.16□□□□□ -1.1
CLK3-217ENST00000566126 LINC01546A6NGU7 62 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms