RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 ERG28Q9UKR5 140 aa7□□□□□ -1.29
SHMT2-218ENST00000555213 IGKV2-24A0A0C4DH68 120 aa6.99□□□□□ -1.29
SHMT2-218ENST00000555213 TMEM238C9JI98 176 aa6.99□□□□□ -1.29
SHMT2-218ENST00000555213 RPL18AQ02543 176 aaKnown RBP6.99□□□□□ -1.29
SHMT2-218ENST00000555213 LINC00308Q8TCZ7 52 aa6.99□□□□□ -1.29
SHMT2-218ENST00000555213 DPH3Q96FX2 82 aa6.99□□□□□ -1.29
SHMT2-218ENST00000555213 PKHD1P08F94 4074 aa6.99□□□□□ -1.29
SHMT2-218ENST00000555213 LOC107984156A0A0G2JMH3 177 aa6.98□□□□□ -1.29
SHMT2-218ENST00000555213 PFN2P35080 140 aa6.98□□□□□ -1.29
SHMT2-218ENST00000555213 CIRBPQ14011 172 aaKnown RBP6.98□□□□□ -1.29
SHMT2-218ENST00000555213 Q6ZVH6 145 aa6.98□□□□□ -1.29
SHMT2-218ENST00000555213 ARL17AQ8IVW1 177 aa6.98□□□□□ -1.29
SHMT2-218ENST00000555213 MIR7-3HGQ8N6C7 128 aa6.98□□□□□ -1.29
SHMT2-218ENST00000555213 A0A096LNI7 61 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 A0A1B0GWB2 263 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 LINC00158P58513 81 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 GAGE2BQ13066 116 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 COX17Q14061 63 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 BATFQ16520 125 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 MEIG1Q5JSS6 88 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 SCXQ7RTU7 201 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 SPACA4Q8TDM5 124 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 PPDPFQ9H3Y8 114 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 FAM30AQ9NZY2 134 aa6.97□□□□□ -1.29
SHMT2-218ENST00000555213 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.97□□□□□ -1.29
SHMT2-218ENST00000555213 A4D1N5 150 aa6.96□□□□□ -1.3
SHMT2-218ENST00000555213 NDUFC2-KCTD14E9PQ53 114 aa6.96□□□□□ -1.3
SHMT2-218ENST00000555213 TLX1NBP0CAT3 122 aa6.96□□□□□ -1.3
SHMT2-218ENST00000555213 CHTF8P0CG12 524 aa6.96□□□□□ -1.3
SHMT2-218ENST00000555213 CFC1BP0CG36 223 aa6.96□□□□□ -1.3
SHMT2-218ENST00000555213 CFC1P0CG37 223 aa6.96□□□□□ -1.3
SHMT2-218ENST00000555213 IFITM1P13164 125 aa6.96□□□□□ -1.3
SHMT2-218ENST00000555213 NPC2P61916 151 aa6.96□□□□□ -1.3
SHMT2-218ENST00000555213 DNAH5Q8TE73 4624 aa6.96□□□□□ -1.3
SHMT2-218ENST00000555213 XGP55808 180 aa6.95□□□□□ -1.3
SHMT2-218ENST00000555213 HAMPP81172 84 aa6.95□□□□□ -1.3
SHMT2-218ENST00000555213 Q8NDZ9 215 aa6.95□□□□□ -1.3
SHMT2-218ENST00000555213 DNAH8Q96JB1 4490 aa6.95□□□□□ -1.3
SHMT2-218ENST00000555213 TAX1BP3O14907 124 aa6.94□□□□□ -1.3
SHMT2-218ENST00000555213 CIRBP-AS1Q8TBR5 109 aa6.94□□□□□ -1.3
SHMT2-218ENST00000555213 SND1-IT1Q9HBX3 110 aa6.94□□□□□ -1.3
SHMT2-218ENST00000555213 ABCA13Q86UQ4 5058 aa6.94□□□□□ -1.3
SHMT2-218ENST00000555213 PANO1I0J062 215 aa6.93□□□□□ -1.3
SHMT2-218ENST00000555213 K7ERJ3 54 aa6.93□□□□□ -1.3
SHMT2-218ENST00000555213 GAGE2EQ4V326 116 aa6.93□□□□□ -1.3
SHMT2-218ENST00000555213 GAGE2DQ9UEU5 116 aa6.93□□□□□ -1.3
SHMT2-218ENST00000555213 A0A087WYN8 130 aa6.92□□□□□ -1.3
SHMT2-218ENST00000555213 RPL24P83731 157 aaKnown RBP6.92□□□□□ -1.3
SHMT2-218ENST00000555213 LBHQ53QV2 105 aaPredicted RBP6.92□□□□□ -1.3
SHMT2-218ENST00000555213 COL5A1-AS1Q5SY13 56 aa6.92□□□□□ -1.3
SHMT2-218ENST00000555213 Q6ZRP5 223 aa6.92□□□□□ -1.3
SHMT2-218ENST00000555213 NHP2Q9NX24 153 aaKnown RBP6.92□□□□□ -1.3
SHMT2-218ENST00000555213 PLAC8Q9NZF1 115 aa6.92□□□□□ -1.3
SHMT2-218ENST00000555213 IGKV2-28A0A075B6P5 120 aa6.91□□□□□ -1.3
SHMT2-218ENST00000555213 IGKV2D-28P01615 120 aa6.91□□□□□ -1.3
SHMT2-218ENST00000555213 DYNC1H1Q14204 4646 aaKnown RBP6.91□□□□□ -1.3
SHMT2-218ENST00000555213 A6NDN8 102 aa6.9□□□□□ -1.3
SHMT2-218ENST00000555213 FAM229AH3BQW9 127 aa6.9□□□□□ -1.3
SHMT2-218ENST00000555213 PRR3P79522 188 aaKnown RBP6.9□□□□□ -1.3
SHMT2-218ENST00000555213 C9orf129Q5T035 196 aaKnown RBP6.9□□□□□ -1.3
SHMT2-218ENST00000555213 LINC00528Q8N1L1 170 aa6.9□□□□□ -1.3
SHMT2-218ENST00000555213 Q8N1X5 172 aa6.9□□□□□ -1.3
SHMT2-218ENST00000555213 C7orf33Q8WU49 177 aa6.9□□□□□ -1.3
SHMT2-218ENST00000555213 LRP1BQ9NZR2 4599 aa6.89□□□□□ -1.31
SHMT2-218ENST00000555213 A0A0B4J2C4 111 aa6.89□□□□□ -1.31
SHMT2-218ENST00000555213 EPM2AB3EWF7 344 aa6.89□□□□□ -1.31
SHMT2-218ENST00000555213 SMR3BP02814 79 aaPredicted RBP6.89□□□□□ -1.31
SHMT2-218ENST00000555213 KRTAP7-1Q8IUC3 87 aa6.89□□□□□ -1.31
SHMT2-218ENST00000555213 XAGE1AQ9HD64 81 aa6.89□□□□□ -1.31
SHMT2-218ENST00000555213 TMEM238LA0A1B0GVL6 79 aa6.88□□□□□ -1.31
SHMT2-218ENST00000555213 A6NJY4 79 aa6.88□□□□□ -1.31
SHMT2-218ENST00000555213 PLA2G1BP04054 148 aaKnown RBP6.88□□□□□ -1.31
SHMT2-218ENST00000555213 FAM19A5Q7Z5A7 132 aaPredicted RBP6.88□□□□□ -1.31
SHMT2-218ENST00000555213 LINC00337Q8N6G1 96 aa6.88□□□□□ -1.31
SHMT2-218ENST00000555213 RAB37Q96AX2 223 aa6.88□□□□□ -1.31
SHMT2-218ENST00000555213 PRO1854Q9UHT4 67 aa6.88□□□□□ -1.31
SHMT2-218ENST00000555213 C9orf118A6NHY6 69 aa6.87□□□□□ -1.31
SHMT2-218ENST00000555213 NDUFC2O95298 119 aa6.87□□□□□ -1.31
SHMT2-218ENST00000555213 Q5VSD8 79 aa6.87□□□□□ -1.31
SHMT2-218ENST00000555213 KRTAP4-5Q9BYR2 181 aa6.87□□□□□ -1.31
SHMT2-218ENST00000555213 A0A1B0GV90 55 aa6.86□□□□□ -1.31
SHMT2-218ENST00000555213 COPS9Q8WXC6 57 aa6.86□□□□□ -1.31
SHMT2-218ENST00000555213 NAA38Q9BRA0 125 aaKnown RBP6.86□□□□□ -1.31
SHMT2-218ENST00000555213 A0A1W2PNN7 141 aa6.85□□□□□ -1.31
SHMT2-218ENST00000555213 FAM168BA1KXE4 195 aa6.85□□□□□ -1.31
SHMT2-218ENST00000555213 M0QXV9 152 aa6.85□□□□□ -1.31
SHMT2-218ENST00000555213 TSPAN13O95857 204 aa6.85□□□□□ -1.31
SHMT2-218ENST00000555213 VPREB1P12018 145 aa6.85□□□□□ -1.31
SHMT2-218ENST00000555213 RPL37AP61513 92 aaKnown RBP6.85□□□□□ -1.31
SHMT2-218ENST00000555213 SERTAD4-AS1Q5TG53 156 aa6.84□□□□□ -1.31
SHMT2-218ENST00000555213 NKAPP1Q8N9T2 125 aa6.84□□□□□ -1.31
SHMT2-218ENST00000555213 PLA2G2DQ9UNK4 145 aa6.84□□□□□ -1.31
SHMT2-218ENST00000555213 H3BUT2 72 aa6.83□□□□□ -1.32
SHMT2-218ENST00000555213 UBE2BP63146 152 aa6.82□□□□□ -1.32
SHMT2-218ENST00000555213 APOBP04114 4563 aaKnown RBP6.81□□□□□ -1.32
SHMT2-218ENST00000555213 IGLV5-37A0A075B6J1 123 aa6.81□□□□□ -1.32
SHMT2-218ENST00000555213 TRAV13-2A0A0B4J235 113 aa6.81□□□□□ -1.32
SHMT2-218ENST00000555213 TRBV10-2A0A0K0K1G8 114 aa6.81□□□□□ -1.32
SHMT2-218ENST00000555213 RPL13AP40429 203 aaKnown RBP6.81□□□□□ -1.32
SHMT2-218ENST00000555213 PHF5AQ7RTV0 110 aaKnown RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms