RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 RNF151Q2KHN1 245 aa17.45■□□□□ 0.38
CCDC88C-205ENST00000553403 H3BT86 120 aa17.45■□□□□ 0.38
CCDC88C-205ENST00000553403 TRACP01848 142 aa17.44■□□□□ 0.38
CCDC88C-205ENST00000553403 H0YGX0 51 aa17.42■□□□□ 0.38
CCDC88C-205ENST00000553403 Q6ZRU5 148 aa17.42■□□□□ 0.38
CCDC88C-205ENST00000553403 PPDPFLQ8WWR9 84 aa17.42■□□□□ 0.38
CCDC88C-205ENST00000553403 APLNQ9ULZ1 77 aa17.42■□□□□ 0.38
CCDC88C-205ENST00000553403 PRR3P79522 188 aaKnown RBP17.41■□□□□ 0.38
CCDC88C-205ENST00000553403 CARD19Q96LW7 228 aa17.41■□□□□ 0.38
CCDC88C-205ENST00000553403 TMEM126AQ9H061 195 aa17.41■□□□□ 0.38
CCDC88C-205ENST00000553403 Q8NDZ9 215 aa17.39■□□□□ 0.37
CCDC88C-205ENST00000553403 FAM218AQ96MZ4 157 aa17.38■□□□□ 0.37
CCDC88C-205ENST00000553403 VPS25Q9BRG1 176 aa17.37■□□□□ 0.37
CCDC88C-205ENST00000553403 SYCNQ0VAF6 134 aa17.36■□□□□ 0.37
CCDC88C-205ENST00000553403 NCR3O14931 201 aa17.36■□□□□ 0.37
CCDC88C-205ENST00000553403 NDUFC2-KCTD14E9PQ53 114 aa17.35■□□□□ 0.37
CCDC88C-205ENST00000553403 COL7A1Q02388 2944 aa17.34■□□□□ 0.37
CCDC88C-205ENST00000553403 NUPR2A6NF83 97 aa17.32■□□□□ 0.36
CCDC88C-205ENST00000553403 S100A7L2Q5SY68 101 aa17.32■□□□□ 0.36
CCDC88C-205ENST00000553403 UBE2DNLQ8IWF7 75 aa17.32■□□□□ 0.36
CCDC88C-205ENST00000553403 USP17L23D6RBM5 183 aa17.31■□□□□ 0.36
CCDC88C-205ENST00000553403 WWC2-AS2Q96NR7 200 aa17.31■□□□□ 0.36
CCDC88C-205ENST00000553403 XAGE1AQ9HD64 81 aa17.31■□□□□ 0.36
CCDC88C-205ENST00000553403 CASC10Q5T4H9 136 aa17.29■□□□□ 0.36
CCDC88C-205ENST00000553403 CBY1Q9Y3M2 126 aa17.29■□□□□ 0.36
CCDC88C-205ENST00000553403 IGLV6-57P01721 117 aa17.28■□□□□ 0.36
CCDC88C-205ENST00000553403 A0A087WYN8 130 aa17.27■□□□□ 0.36
CCDC88C-205ENST00000553403 RPL18AQ02543 176 aaKnown RBP17.26■□□□□ 0.35
CCDC88C-205ENST00000553403 A0A1B0GX51 115 aa17.25■□□□□ 0.35
CCDC88C-205ENST00000553403 BAALC-AS2P0C853 105 aa17.25■□□□□ 0.35
CCDC88C-205ENST00000553403 TLX1NBP0CAT3 122 aa17.25■□□□□ 0.35
CCDC88C-205ENST00000553403 DNAL4O96015 105 aa17.24■□□□□ 0.35
CCDC88C-205ENST00000553403 VPREB1P12018 145 aa17.24■□□□□ 0.35
CCDC88C-205ENST00000553403 DYNC2H1Q8NCM8 4307 aaKnown RBP17.23■□□□□ 0.35
CCDC88C-205ENST00000553403 Q6ZRP5 223 aa17.23■□□□□ 0.35
CCDC88C-205ENST00000553403 DNAH1Q9P2D7 4330 aa17.23■□□□□ 0.35
CCDC88C-205ENST00000553403 KRTAP1-5Q9BYS1 174 aa17.23■□□□□ 0.35
CCDC88C-205ENST00000553403 TEX49A0A1B0GTD5 131 aa17.22■□□□□ 0.35
CCDC88C-205ENST00000553403 GAGE2EQ4V326 116 aa17.22■□□□□ 0.35
CCDC88C-205ENST00000553403 GAGE2DQ9UEU5 116 aa17.22■□□□□ 0.35
CCDC88C-205ENST00000553403 LECT2O14960 151 aa17.21■□□□□ 0.35
CCDC88C-205ENST00000553403 SLPIP03973 132 aa17.21■□□□□ 0.35
CCDC88C-205ENST00000553403 C6orf99Q4VX62 202 aa17.2■□□□□ 0.34
CCDC88C-205ENST00000553403 M0R378 163 aa17.2■□□□□ 0.34
CCDC88C-205ENST00000553403 TRBV10-3A0A0K0K1G6 114 aa17.18■□□□□ 0.34
CCDC88C-205ENST00000553403 LINC00167Q96N53 147 aa17.17■□□□□ 0.34
CCDC88C-205ENST00000553403 STAB2Q8WWQ8 2551 aa17.16■□□□□ 0.34
CCDC88C-205ENST00000553403 C9orf129Q5T035 196 aaKnown RBP17.16■□□□□ 0.34
CCDC88C-205ENST00000553403 C22orf24Q9Y442 160 aa17.15■□□□□ 0.34
CCDC88C-205ENST00000553403 TRAV23DV6A0A075B6W5 121 aa17.14■□□□□ 0.33
CCDC88C-205ENST00000553403 SNCGO76070 127 aa17.14■□□□□ 0.33
CCDC88C-205ENST00000553403 Q8N814 137 aa17.14■□□□□ 0.33
CCDC88C-205ENST00000553403 TTC32Q5I0X7 151 aa17.13■□□□□ 0.33
CCDC88C-205ENST00000553403 PLA2G2DQ9UNK4 145 aa17.13■□□□□ 0.33
CCDC88C-205ENST00000553403 LINC00575Q6W349 94 aa17.11■□□□□ 0.33
CCDC88C-205ENST00000553403 DIRC1Q969H9 104 aa17.1■□□□□ 0.33
CCDC88C-205ENST00000553403 ORMDL1Q9P0S3 153 aa17.1■□□□□ 0.33
CCDC88C-205ENST00000553403 PSCAO43653 123 aa17.1■□□□□ 0.33
CCDC88C-205ENST00000553403 C3orf84H3BNL1 204 aa17.08■□□□□ 0.32
CCDC88C-205ENST00000553403 CDIP1Q9H305 208 aa17.08■□□□□ 0.32
CCDC88C-205ENST00000553403 TRBV7-6A0A0J9YX20 115 aa17.07■□□□□ 0.32
CCDC88C-205ENST00000553403 NBDYA0A0U1RRE5 68 aa17.07■□□□□ 0.32
CCDC88C-205ENST00000553403 LOC107984640A0A0U1RRK4 108 aa17.07■□□□□ 0.32
CCDC88C-205ENST00000553403 ZNF73O43830 326 aaPredicted RBP17.07■□□□□ 0.32
CCDC88C-205ENST00000553403 C14orf177Q52M58 125 aa17.05■□□□□ 0.32
CCDC88C-205ENST00000553403 NKAPP1Q8N9T2 125 aa17.05■□□□□ 0.32
CCDC88C-205ENST00000553403 IGLV5-37A0A075B6J1 123 aa17.04■□□□□ 0.32
CCDC88C-205ENST00000553403 hADV29S1A0JD25 119 aa17.04■□□□□ 0.32
CCDC88C-205ENST00000553403 CNBPP62633 177 aaKnown RBP17.04■□□□□ 0.32
CCDC88C-205ENST00000553403 SERTAD4-AS1Q5TG53 156 aa17.04■□□□□ 0.32
CCDC88C-205ENST00000553403 SIGMAR1Q99720 223 aa17.04■□□□□ 0.32
CCDC88C-205ENST00000553403 INAFM2P0DMQ5 153 aa17.03■□□□□ 0.32
CCDC88C-205ENST00000553403 FAM240AA0A1B0GVK7 77 aa17.01■□□□□ 0.31
CCDC88C-205ENST00000553403 COX7BP24311 80 aa17.01■□□□□ 0.31
CCDC88C-205ENST00000553403 GAGE2BQ13066 116 aa17.01■□□□□ 0.31
CCDC88C-205ENST00000553403 ELOF1P60002 83 aaKnown RBP17■□□□□ 0.31
CCDC88C-205ENST00000553403 OBSCN-AS1Q96MR7 158 aa17■□□□□ 0.31
CCDC88C-205ENST00000553403 TMEM256-PLSCR3K7ERE1 68 aa16.99■□□□□ 0.31
CCDC88C-205ENST00000553403 C7orf33Q8WU49 177 aa16.98■□□□□ 0.31
CCDC88C-205ENST00000553403 KCNQ1DNQ9H478 68 aa16.97■□□□□ 0.31
CCDC88C-205ENST00000553403 H3BQ85 93 aa16.94■□□□□ 0.3
CCDC88C-205ENST00000553403 ACYP1P07311 99 aa16.94■□□□□ 0.3
CCDC88C-205ENST00000553403 KMT2CQ8NEZ4 4911 aaKnown RBP16.94■□□□□ 0.3
CCDC88C-205ENST00000553403 FAM168BA1KXE4 195 aa16.92■□□□□ 0.3
CCDC88C-205ENST00000553403 PLECQ15149 4684 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-205ENST00000553403 Q6ZRN7 208 aaPredicted RBP16.92■□□□□ 0.3
CCDC88C-205ENST00000553403 LRCOL1A6NCL2 159 aa16.91■□□□□ 0.3
CCDC88C-205ENST00000553403 KRTAP7-1Q8IUC3 87 aa16.91■□□□□ 0.3
CCDC88C-205ENST00000553403 C16orf90A8MZG2 172 aa16.9■□□□□ 0.3
CCDC88C-205ENST00000553403 JMJD7-PLA2G4BH0Y9G9 81 aa16.9■□□□□ 0.3
CCDC88C-205ENST00000553403 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP16.9■□□□□ 0.3
CCDC88C-205ENST00000553403 LINC00528Q8N1L1 170 aa16.9■□□□□ 0.3
CCDC88C-205ENST00000553403 DNAH7Q8WXX0 4024 aa16.9■□□□□ 0.3
CCDC88C-205ENST00000553403 XGP55808 180 aa16.89■□□□□ 0.29
CCDC88C-205ENST00000553403 PRYO14603 147 aa16.88■□□□□ 0.29
CCDC88C-205ENST00000553403 IGLV1-50A0A075B6I6 118 aa16.88■□□□□ 0.29
CCDC88C-205ENST00000553403 Q6ZQY7 126 aa16.88■□□□□ 0.29
CCDC88C-205ENST00000553403 CSMD3Q7Z407 3707 aa16.87■□□□□ 0.29
CCDC88C-205ENST00000553403 GHRHP01286 108 aa16.86■□□□□ 0.29
CCDC88C-205ENST00000553403 C14orf132Q9NPU4 83 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms