RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 XAGE1AQ9HD64 81 aa10.9□□□□□ -0.67
COL4A1-204ENST00000543140 TM2D3Q9BRN9 247 aa10.89□□□□□ -0.67
COL4A1-204ENST00000543140 TMEM126AQ9H061 195 aa10.89□□□□□ -0.67
COL4A1-204ENST00000543140 IGKV2D-24A0A075B6R9 120 aa10.89□□□□□ -0.67
COL4A1-204ENST00000543140 LINC01556Q5JQF7 62 aa10.89□□□□□ -0.67
COL4A1-204ENST00000543140 C1orf43Q9BWL3 253 aa10.89□□□□□ -0.67
COL4A1-204ENST00000543140 S100A7L2Q5SY68 101 aa10.88□□□□□ -0.67
COL4A1-204ENST00000543140 CAMK2N2Q96S95 79 aa10.88□□□□□ -0.67
COL4A1-204ENST00000543140 TRAV10A0A0B4J240 114 aa10.87□□□□□ -0.67
COL4A1-204ENST00000543140 C15orf56Q8N910 161 aa10.87□□□□□ -0.67
COL4A1-204ENST00000543140 C15orf53Q8NAA6 179 aa10.87□□□□□ -0.67
COL4A1-204ENST00000543140 GVQW2A0A096LPI5 108 aaPredicted RBP10.86□□□□□ -0.67
COL4A1-204ENST00000543140 RPL18AQ02543 176 aaKnown RBP10.86□□□□□ -0.67
COL4A1-204ENST00000543140 C6orf99Q4VX62 202 aa10.85□□□□□ -0.67
COL4A1-204ENST00000543140 TTC32Q5I0X7 151 aa10.85□□□□□ -0.67
COL4A1-204ENST00000543140 C9orf129Q5T035 196 aaKnown RBP10.85□□□□□ -0.67
COL4A1-204ENST00000543140 Q6ZRU5 148 aa10.85□□□□□ -0.67
COL4A1-204ENST00000543140 LINC00588Q9Y4M8 146 aa10.84□□□□□ -0.67
COL4A1-204ENST00000543140 MUC7Q8TAX7 377 aa10.83□□□□□ -0.68
COL4A1-204ENST00000543140 ANAPC13Q9BS18 74 aa10.83□□□□□ -0.68
COL4A1-204ENST00000543140 DNAH10OSP0CZ25 163 aa10.82□□□□□ -0.68
COL4A1-204ENST00000543140 SNCGO76070 127 aa10.82□□□□□ -0.68
COL4A1-204ENST00000543140 STAB2Q8WWQ8 2551 aa10.81□□□□□ -0.68
COL4A1-204ENST00000543140 NHLRC4P0CG21 123 aaPredicted RBP10.81□□□□□ -0.68
COL4A1-204ENST00000543140 Q8N814 137 aa10.81□□□□□ -0.68
COL4A1-204ENST00000543140 COL7A1Q02388 2944 aa10.81□□□□□ -0.68
COL4A1-204ENST00000543140 FAM240AA0A1B0GVK7 77 aa10.8□□□□□ -0.68
COL4A1-204ENST00000543140 GAGE2EQ4V326 116 aa10.8□□□□□ -0.68
COL4A1-204ENST00000543140 MDFIQ99750 246 aa10.8□□□□□ -0.68
COL4A1-204ENST00000543140 ORMDL1Q9P0S3 153 aa10.8□□□□□ -0.68
COL4A1-204ENST00000543140 GAGE2DQ9UEU5 116 aa10.8□□□□□ -0.68
COL4A1-204ENST00000543140 GAGE2BQ13066 116 aa10.79□□□□□ -0.68
COL4A1-204ENST00000543140 IGLV6-57P01721 117 aa10.79□□□□□ -0.68
COL4A1-204ENST00000543140 C14orf132Q9NPU4 83 aa10.79□□□□□ -0.68
COL4A1-204ENST00000543140 TRBV10-3A0A0K0K1G6 114 aa10.78□□□□□ -0.68
COL4A1-204ENST00000543140 INAFM2P0DMQ5 153 aa10.78□□□□□ -0.68
COL4A1-204ENST00000543140 GAGE2AQ6NT46 116 aa10.78□□□□□ -0.68
COL4A1-204ENST00000543140 C2orf48Q96LS8 159 aa10.78□□□□□ -0.68
COL4A1-204ENST00000543140 HUWE1Q7Z6Z7 4374 aaKnown RBP10.77□□□□□ -0.69
COL4A1-204ENST00000543140 NDUFC2-KCTD14E9PQ53 114 aa10.76□□□□□ -0.69
COL4A1-204ENST00000543140 CASC10Q5T4H9 136 aa10.76□□□□□ -0.69
COL4A1-204ENST00000543140 NDUFV3P56181 108 aaKnown RBP10.75□□□□□ -0.69
COL4A1-204ENST00000543140 SYCNQ0VAF6 134 aa10.75□□□□□ -0.69
COL4A1-204ENST00000543140 Q6ZRP5 223 aa10.75□□□□□ -0.69
COL4A1-204ENST00000543140 SS18L2Q9UHA2 77 aa10.75□□□□□ -0.69
COL4A1-204ENST00000543140 LINC00575Q6W349 94 aa10.75□□□□□ -0.69
COL4A1-204ENST00000543140 LINC00167Q96N53 147 aa10.75□□□□□ -0.69
COL4A1-204ENST00000543140 B5MCH6 92 aa10.74□□□□□ -0.69
COL4A1-204ENST00000543140 A0A1B0GX51 115 aa10.74□□□□□ -0.69
COL4A1-204ENST00000543140 CCDC179H3BU77 68 aa10.74□□□□□ -0.69
COL4A1-204ENST00000543140 ACYP1P07311 99 aa10.74□□□□□ -0.69
COL4A1-204ENST00000543140 VPREB1P12018 145 aa10.74□□□□□ -0.69
COL4A1-204ENST00000543140 SMCR5Q8TEV8 140 aa10.74□□□□□ -0.69
COL4A1-204ENST00000543140 TRAV23DV6A0A075B6W5 121 aa10.73□□□□□ -0.69
COL4A1-204ENST00000543140 OBSCN-AS1Q96MR7 158 aa10.73□□□□□ -0.69
COL4A1-204ENST00000543140 hADV29S1A0JD25 119 aa10.71□□□□□ -0.69
COL4A1-204ENST00000543140 USP17L23D6RBM5 183 aa10.71□□□□□ -0.7
COL4A1-204ENST00000543140 TMEM256-PLSCR3K7ERE1 68 aa10.69□□□□□ -0.7
COL4A1-204ENST00000543140 ZNF73O43830 326 aaPredicted RBP10.69□□□□□ -0.7
COL4A1-204ENST00000543140 DIRC1Q969H9 104 aa10.69□□□□□ -0.7
COL4A1-204ENST00000543140 M0R378 163 aa10.68□□□□□ -0.7
COL4A1-204ENST00000543140 F8WDY8 70 aa10.66□□□□□ -0.7
COL4A1-204ENST00000543140 Q6ZQY7 126 aa10.66□□□□□ -0.7
COL4A1-204ENST00000543140 UPK3BQ9BT76 320 aa10.65□□□□□ -0.7
COL4A1-204ENST00000543140 TENM2Q9NT68 2774 aa10.65□□□□□ -0.7
COL4A1-204ENST00000543140 COX7BP24311 80 aa10.64□□□□□ -0.71
COL4A1-204ENST00000543140 SERTAD4-AS1Q5TG53 156 aa10.64□□□□□ -0.71
COL4A1-204ENST00000543140 SDIM1Q6ZPB5 146 aa10.64□□□□□ -0.71
COL4A1-204ENST00000543140 LINC00643Q86TS7 51 aa10.64□□□□□ -0.71
COL4A1-204ENST00000543140 RMI2Q96E14 147 aa10.64□□□□□ -0.71
COL4A1-204ENST00000543140 LYSTQ99698 3801 aa10.64□□□□□ -0.71
COL4A1-204ENST00000543140 JMJD7-PLA2G4BH0Y9G9 81 aa10.63□□□□□ -0.71
COL4A1-204ENST00000543140 Q6Q795 121 aa10.63□□□□□ -0.71
COL4A1-204ENST00000543140 LINC00846Q9NV44 126 aa10.63□□□□□ -0.71
COL4A1-204ENST00000543140 KRTAP1-5Q9BYS1 174 aa10.62□□□□□ -0.71
COL4A1-204ENST00000543140 ELOF1P60002 83 aaKnown RBP10.62□□□□□ -0.71
COL4A1-204ENST00000543140 NKAPP1Q8N9T2 125 aa10.62□□□□□ -0.71
COL4A1-204ENST00000543140 LAMTOR3Q9UHA4 124 aa10.61□□□□□ -0.71
COL4A1-204ENST00000543140 TRBV7-7A0A0K0K1E9 115 aa10.61□□□□□ -0.71
COL4A1-204ENST00000543140 FAM168BA1KXE4 195 aa10.61□□□□□ -0.71
COL4A1-204ENST00000543140 CCKP06307 115 aa10.6□□□□□ -0.71
COL4A1-204ENST00000543140 B9D2Q9BPU9 175 aa10.6□□□□□ -0.71
COL4A1-204ENST00000543140 UBE2DNLQ8IWF7 75 aa10.59□□□□□ -0.71
COL4A1-204ENST00000543140 C7orf33Q8WU49 177 aa10.59□□□□□ -0.71
COL4A1-204ENST00000543140 FAM236AA0A1B0GUQ0 79 aa10.58□□□□□ -0.72
COL4A1-204ENST00000543140 FAM236BA0A1B0GV22 79 aa10.58□□□□□ -0.72
COL4A1-204ENST00000543140 TLX1NBP0CAT3 122 aa10.58□□□□□ -0.72
COL4A1-204ENST00000543140 RBM3P98179 157 aaKnown RBP10.57□□□□□ -0.72
COL4A1-204ENST00000543140 APLNQ9ULZ1 77 aa10.57□□□□□ -0.72
COL4A1-204ENST00000543140 TRBV7-6A0A0J9YX20 115 aa10.57□□□□□ -0.72
COL4A1-204ENST00000543140 RPL37AP8A6NKH3 93 aa10.57□□□□□ -0.72
COL4A1-204ENST00000543140 DNAH9Q9NYC9 4486 aa10.56□□□□□ -0.72
COL4A1-204ENST00000543140 LINC00528Q8N1L1 170 aa10.56□□□□□ -0.72
COL4A1-204ENST00000543140 DNAH1Q9P2D7 4330 aa10.55□□□□□ -0.72
COL4A1-204ENST00000543140 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.55□□□□□ -0.72
COL4A1-204ENST00000543140 CSMD3Q7Z407 3707 aa10.54□□□□□ -0.72
COL4A1-204ENST00000543140 IGKV3D-7A0A0C4DH55 119 aa10.54□□□□□ -0.72
COL4A1-204ENST00000543140 KCNQ1DNQ9H478 68 aa10.54□□□□□ -0.72
COL4A1-204ENST00000543140 PSCAO43653 123 aa10.53□□□□□ -0.72
COL4A1-204ENST00000543140 KRTAP7-1Q8IUC3 87 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms