RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 LINC00304Q8N9R0 145 aa4.9□□□□□ -1.63
USP28-203ENST00000537490 Q8NDZ9 215 aa4.9□□□□□ -1.63
USP28-203ENST00000537490 ZNF625Q96I27 306 aaPredicted RBP4.9□□□□□ -1.63
USP28-203ENST00000537490 SEC11CQ9BY50 192 aa4.9□□□□□ -1.63
USP28-203ENST00000537490 TMEM126AQ9H061 195 aa4.9□□□□□ -1.63
USP28-203ENST00000537490 ERG28Q9UKR5 140 aa4.9□□□□□ -1.63
USP28-203ENST00000537490 IGKV2D-26A0A0A0MRZ7 120 aa4.89□□□□□ -1.63
USP28-203ENST00000537490 A0A0U1RQV1 116 aa4.89□□□□□ -1.63
USP28-203ENST00000537490 M0R378 163 aa4.89□□□□□ -1.63
USP28-203ENST00000537490 MUC2Q02817 5179 aa4.89□□□□□ -1.63
USP28-203ENST00000537490 LINC00614P0C842 121 aa4.88□□□□□ -1.63
USP28-203ENST00000537490 RPL24P83731 157 aaKnown RBP4.88□□□□□ -1.63
USP28-203ENST00000537490 PMCHL1Q16048 86 aa4.88□□□□□ -1.63
USP28-203ENST00000537490 C3orf22Q8N5N4 141 aa4.88□□□□□ -1.63
USP28-203ENST00000537490 PLEKHB2Q96CS7 222 aa4.88□□□□□ -1.63
USP28-203ENST00000537490 IGLV7-46A0A075B6I9 117 aa4.87□□□□□ -1.63
USP28-203ENST00000537490 C11orf86A6NJI1 115 aa4.87□□□□□ -1.63
USP28-203ENST00000537490 COX17Q14061 63 aa4.87□□□□□ -1.63
USP28-203ENST00000537490 C10orf91Q5T1B1 145 aa4.87□□□□□ -1.63
USP28-203ENST00000537490 BAGE3Q86Y29 109 aa4.87□□□□□ -1.63
USP28-203ENST00000537490 C18orf32Q8TCD1 76 aa4.87□□□□□ -1.63
USP28-203ENST00000537490 RPS10P5Q9NQ39 176 aa4.87□□□□□ -1.63
USP28-203ENST00000537490 HBDP02042 147 aa4.86□□□□□ -1.63
USP28-203ENST00000537490 TPRXLQ17RH7 258 aa4.86□□□□□ -1.63
USP28-203ENST00000537490 TMEM170BQ5T4T1 132 aa4.86□□□□□ -1.63
USP28-203ENST00000537490 COMMD7Q86VX2 200 aa4.86□□□□□ -1.63
USP28-203ENST00000537490 CBLN2Q8IUK8 224 aa4.86□□□□□ -1.63
USP28-203ENST00000537490 CDIP1Q9H305 208 aa4.86□□□□□ -1.63
USP28-203ENST00000537490 TRAPPC1Q9Y5R8 145 aa4.86□□□□□ -1.63
USP28-203ENST00000537490 A0A0U1RRA0 63 aa4.85□□□□□ -1.63
USP28-203ENST00000537490 LINC00158P58513 81 aa4.85□□□□□ -1.63
USP28-203ENST00000537490 CTAG1AP78358 180 aa4.85□□□□□ -1.63
USP28-203ENST00000537490 RHEBQ15382 184 aa4.85□□□□□ -1.63
USP28-203ENST00000537490 HIGD2AQ9BW72 106 aa4.85□□□□□ -1.63
USP28-203ENST00000537490 KRTAP9-9Q9BYP9 154 aa4.85□□□□□ -1.63
USP28-203ENST00000537490 KRTAP9-4Q9BYQ2 154 aa4.85□□□□□ -1.63
USP28-203ENST00000537490 SPRR4Q96PI1 79 aa4.84□□□□□ -1.63
USP28-203ENST00000537490 TMEM223A0PJW6 202 aa4.83□□□□□ -1.64
USP28-203ENST00000537490 SFTA2Q6UW10 78 aa4.83□□□□□ -1.64
USP28-203ENST00000537490 KRTAP19-1Q8IUB9 90 aa4.83□□□□□ -1.64
USP28-203ENST00000537490 PPDPFQ9H3Y8 114 aa4.83□□□□□ -1.64
USP28-203ENST00000537490 CHTOPQ9Y3Y2 248 aaKnown RBP4.83□□□□□ -1.64
USP28-203ENST00000537490 MUC17Q685J3 4493 aa4.82□□□□□ -1.64
USP28-203ENST00000537490 SMIM13P0DJ93 91 aa4.82□□□□□ -1.64
USP28-203ENST00000537490 SPAG11AQ6PDA7 123 aa4.82□□□□□ -1.64
USP28-203ENST00000537490 KRTAP4-8A0A0G2JLE6 195 aa4.81□□□□□ -1.64
USP28-203ENST00000537490 BOD1L2Q8IYS8 172 aa4.81□□□□□ -1.64
USP28-203ENST00000537490 DAND5Q8N907 189 aa4.81□□□□□ -1.64
USP28-203ENST00000537490 SMCR5Q8TEV8 140 aa4.81□□□□□ -1.64
USP28-203ENST00000537490 FAT4Q6V0I7 4981 aa4.8□□□□□ -1.64
USP28-203ENST00000537490 TRAV12-1A0A0B4J245 112 aa4.8□□□□□ -1.64
USP28-203ENST00000537490 KRTAP4-16G5E9R7 235 aaPredicted RBP4.8□□□□□ -1.64
USP28-203ENST00000537490 PRYO14603 147 aa4.8□□□□□ -1.64
USP28-203ENST00000537490 NCR3O14931 201 aa4.8□□□□□ -1.64
USP28-203ENST00000537490 SPRR1AP35321 89 aa4.8□□□□□ -1.64
USP28-203ENST00000537490 MIR7-3HGQ8N6C7 128 aa4.8□□□□□ -1.64
USP28-203ENST00000537490 IFI27L1Q96BM0 104 aa4.8□□□□□ -1.64
USP28-203ENST00000537490 KCNQ1DNQ9H478 68 aa4.8□□□□□ -1.64
USP28-203ENST00000537490 ATP6V1G1O75348 118 aa4.79□□□□□ -1.64
USP28-203ENST00000537490 APOC3P02656 99 aa4.79□□□□□ -1.64
USP28-203ENST00000537490 MEIG1Q5JSS6 88 aa4.79□□□□□ -1.64
USP28-203ENST00000537490 LINC00337Q8N6G1 96 aa4.79□□□□□ -1.64
USP28-203ENST00000537490 Q8NBF4 154 aa4.79□□□□□ -1.64
USP28-203ENST00000537490 ZNF706Q9Y5V0 76 aaPredicted RBP4.79□□□□□ -1.64
USP28-203ENST00000537490 TRBV10-3A0A0K0K1G6 114 aa4.78□□□□□ -1.64
USP28-203ENST00000537490 KRTAP13-3Q3SY46 172 aa4.78□□□□□ -1.64
USP28-203ENST00000537490 FP248Q71RG6 208 aaPredicted RBP4.78□□□□□ -1.64
USP28-203ENST00000537490 CHCHD1Q96BP2 118 aaKnown RBP4.78□□□□□ -1.64
USP28-203ENST00000537490 ETDCA0A1B0GVM5 59 aa4.77□□□□□ -1.65
USP28-203ENST00000537490 HERV-K104P63124 156 aa4.77□□□□□ -1.65
USP28-203ENST00000537490 FAM19A2Q8N3H0 131 aa4.77□□□□□ -1.65
USP28-203ENST00000537490 YPEL4Q96NS1 127 aa4.77□□□□□ -1.65
USP28-203ENST00000537490 NDUFA12Q9UI09 145 aa4.77□□□□□ -1.65
USP28-203ENST00000537490 B5MCH6 92 aa4.76□□□□□ -1.65
USP28-203ENST00000537490 ERC2-IT1O76042 136 aa4.76□□□□□ -1.65
USP28-203ENST00000537490 SNAPINO95295 136 aa4.76□□□□□ -1.65
USP28-203ENST00000537490 LINC00483Q53H64 154 aa4.76□□□□□ -1.65
USP28-203ENST00000537490 GAGE2AQ6NT46 116 aa4.76□□□□□ -1.65
USP28-203ENST00000537490 MYMXA0A1B0GTQ4 84 aa4.75□□□□□ -1.65
USP28-203ENST00000537490 LINC00587B1AMM8 73 aa4.75□□□□□ -1.65
USP28-203ENST00000537490 SPINK1P00995 79 aa4.75□□□□□ -1.65
USP28-203ENST00000537490 TSPEAR-AS2P59090 65 aa4.75□□□□□ -1.65
USP28-203ENST00000537490 ASB16-AS1Q495Z4 193 aa4.75□□□□□ -1.65
USP28-203ENST00000537490 SVBPQ8N300 66 aa4.75□□□□□ -1.65
USP28-203ENST00000537490 KRTAP4-1Q9BYQ7 146 aa4.75□□□□□ -1.65
USP28-203ENST00000537490 IGLV9-49A0A0B4J1Y8 123 aa4.74□□□□□ -1.65
USP28-203ENST00000537490 LOC107984156A0A0G2JMH3 177 aa4.74□□□□□ -1.65
USP28-203ENST00000537490 H0Y8G0 127 aa4.74□□□□□ -1.65
USP28-203ENST00000537490 HSBP1O75506 76 aa4.74□□□□□ -1.65
USP28-203ENST00000537490 NDUFA5Q16718 116 aa4.74□□□□□ -1.65
USP28-203ENST00000537490 ARL17AQ8IVW1 177 aa4.74□□□□□ -1.65
USP28-203ENST00000537490 MAP1LC3CQ9BXW4 147 aa4.74□□□□□ -1.65
USP28-203ENST00000537490 LEPROTO15243 131 aa4.73□□□□□ -1.65
USP28-203ENST00000537490 DDTP30046 118 aa4.73□□□□□ -1.65
USP28-203ENST00000537490 MOBPQ13875 183 aa4.73□□□□□ -1.65
USP28-203ENST00000537490 SSBP3-AS1Q7Z2R9 100 aa4.73□□□□□ -1.65
USP28-203ENST00000537490 Q9BRP9 147 aa4.73□□□□□ -1.65
USP28-203ENST00000537490 TRBV10-2A0A0K0K1G8 114 aa4.72□□□□□ -1.65
USP28-203ENST00000537490 LINC00310P59036 64 aa4.72□□□□□ -1.65
USP28-203ENST00000537490 S100A12P80511 92 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms