RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 H3BRM9 83 aa2.86□□□□□ -1.95
CD44-226ENST00000527889 K7EMI3 77 aa2.86□□□□□ -1.95
CD44-226ENST00000527889 PSPHP1O15172 72 aa2.86□□□□□ -1.95
CD44-226ENST00000527889 IGLC3P0DOY3 106 aa2.86□□□□□ -1.95
CD44-226ENST00000527889 RNASE13Q5GAN3 156 aaKnown RBP2.86□□□□□ -1.95
CD44-226ENST00000527889 CEMP1Q6PRD7 247 aaPredicted RBP2.86□□□□□ -1.95
CD44-226ENST00000527889 NTM-AS1Q6ZSK4 140 aa2.86□□□□□ -1.95
CD44-226ENST00000527889 NOTCH2NLQ7Z3S9 236 aa2.86□□□□□ -1.95
CD44-226ENST00000527889 C20orf203Q8NBC4 194 aa2.86□□□□□ -1.95
CD44-226ENST00000527889 TM2D3Q9BRN9 247 aa2.86□□□□□ -1.95
CD44-226ENST00000527889 HHLA3Q9XRX5 114 aa2.86□□□□□ -1.95
CD44-226ENST00000527889 FRAS1Q86XX4 4008 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 A0A0J9YXV3 536 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 IGIPA6NJ69 53 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 H3BMG7 143 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 CRYGAP11844 174 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 NPC2P61916 151 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 C6orf99Q4VX62 202 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 LGALS9CQ6DKI2 356 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 Q6ZTC4 211 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 FAM104AQ969W3 186 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 VSIG2Q96IQ7 327 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 KRTAP9-8Q9BYQ0 159 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 MRPL35Q9NZE8 188 aaKnown RBP2.85□□□□□ -1.95
CD44-226ENST00000527889 TP73-AS1Q9UF72 201 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 PRO0255Q9UI72 69 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 SERP1Q9Y6X1 66 aa2.85□□□□□ -1.95
CD44-226ENST00000527889 IGLV4-3A0A075B6K6 122 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 TRAV9-2A0A087WT02 112 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 TRAV12-1A0A0B4J245 112 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 C11orf86A6NJI1 115 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 IGLL5B9A064 214 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 COX7A2LO14548 114 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 ZNF73O43830 326 aaPredicted RBP2.84□□□□□ -1.95
CD44-226ENST00000527889 FAM19A3Q7Z5A8 133 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 TMEM141Q96I45 108 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 TIMM17AQ99595 171 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 TMEM243Q9BU79 118 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 OCR1Q9BZK8 76 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 UBE2D4Q9Y2X8 147 aa2.84□□□□□ -1.95
CD44-226ENST00000527889 DNAH10Q8IVF4 4471 aa2.84□□□□□ -1.96
CD44-226ENST00000527889 IGLV4-69A0A075B6H9 119 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 TRBV25-1A0A075B6N4 114 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 DEFB131BA0A096LNP1 70 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 TRBV6-8A0A0A6YYG3 113 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 LINC01549A6NIU2 74 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 F8VRH5 84 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 H3BT86 120 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 LST1O00453 97 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 IGKCP01834 107 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 UBE2BP63146 152 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 BVES-AS1Q5T3Y7 98 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 LCA10Q71F78 164 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 AMELXQ99217 191 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 CHCHD5Q9BSY4 110 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 ICOSQ9Y6W8 199 aa2.83□□□□□ -1.96
CD44-226ENST00000527889 VPS13DQ5THJ4 4388 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 IGLV4-60A0A075B6I1 120 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 IGKV2D-26A0A0A0MRZ7 120 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 IGKV3OR2-268A0A0C4DH90 116 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 A0A1W2PPM0 123 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 A8MUN3 132 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 TMEM256-PLSCR3K7ERE1 68 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 PLNP26678 52 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 MRPS36P82909 103 aaKnown RBP2.82□□□□□ -1.96
CD44-226ENST00000527889 CLPSL2Q6UWE3 100 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 C6orf223Q8N319 242 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 Q8N9P0 234 aaPredicted RBP2.82□□□□□ -1.96
CD44-226ENST00000527889 PPDPFLQ8WWR9 84 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 LITAFQ99732 161 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 B9D2Q9BPU9 175 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 CHAC1Q9BUX1 264 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 TIMM21Q9BVV7 248 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 TTTY13Q9BZ97 58 aa2.82□□□□□ -1.96
CD44-226ENST00000527889 IGKV2D-30A0A075B6S6 120 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 TRAV10A0A0B4J240 114 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 RPL37AP8A6NKH3 93 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 H7C423 109 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 COX7CP15954 63 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 UBE2D1P51668 147 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 ATP5EP56381 51 aaPredicted RBP2.81□□□□□ -1.96
CD44-226ENST00000527889 PRR3P79522 188 aaKnown RBP2.81□□□□□ -1.96
CD44-226ENST00000527889 COX6A2Q02221 97 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 MPV17L2Q567V2 206 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 TMEM170BQ5T4T1 132 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 LELP1Q5T871 98 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 REG3GQ6UW15 175 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 TEN1Q86WV5 123 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 PCP2Q8IVA1 136 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 NKAPP1Q8N9T2 125 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 Q8NBF4 154 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 CHCHD10Q8WYQ3 142 aaPredicted RBP2.81□□□□□ -1.96
CD44-226ENST00000527889 CDC42SE2Q9NRR3 84 aa2.81□□□□□ -1.96
CD44-226ENST00000527889 ZNF706Q9Y5V0 76 aaPredicted RBP2.81□□□□□ -1.96
CD44-226ENST00000527889 DNAH6Q9C0G6 4158 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 IGHV3-64A0A075B6Q5 118 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 IGHV6-1A0A0B4J1U7 121 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 H3BUT2 72 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 ATOX1O00244 68 aa2.8□□□□□ -1.96
CD44-226ENST00000527889 COX8AP10176 69 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms