RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 GAGE2DQ9UEU5 116 aa6.39□□□□□ -1.39
VPS28-204ENST00000526054 LEPROTO15243 131 aa6.38□□□□□ -1.39
VPS28-204ENST00000526054 C9orf116Q5BN46 136 aaPredicted RBP6.38□□□□□ -1.39
VPS28-204ENST00000526054 Q6ZRP5 223 aa6.38□□□□□ -1.39
VPS28-204ENST00000526054 IGKV2D-26A0A0A0MRZ7 120 aa6.37□□□□□ -1.39
VPS28-204ENST00000526054 COX8AP10176 69 aa6.37□□□□□ -1.39
VPS28-204ENST00000526054 LGALS3P17931 250 aaKnown RBP6.37□□□□□ -1.39
VPS28-204ENST00000526054 C7orf33Q8WU49 177 aa6.37□□□□□ -1.39
VPS28-204ENST00000526054 PRO1933Q9H354 126 aa6.37□□□□□ -1.39
VPS28-204ENST00000526054 TNXBP22105 4242 aa6.36□□□□□ -1.39
VPS28-204ENST00000526054 J3QQQ9 107 aa6.36□□□□□ -1.39
VPS28-204ENST00000526054 MT1HL1P0DM35 61 aa6.36□□□□□ -1.39
VPS28-204ENST00000526054 C14orf144Q96I85 54 aa6.36□□□□□ -1.39
VPS28-204ENST00000526054 UQCR10Q9UDW1 63 aa6.36□□□□□ -1.39
VPS28-204ENST00000526054 SLC25A34Q6PIV7 304 aa6.35□□□□□ -1.39
VPS28-204ENST00000526054 ERG28Q9UKR5 140 aa6.35□□□□□ -1.39
VPS28-204ENST00000526054 A0A1W2PNN7 141 aa6.34□□□□□ -1.39
VPS28-204ENST00000526054 ZNF815PA8K554 130 aa6.34□□□□□ -1.39
VPS28-204ENST00000526054 DLEU1O43261 78 aa6.34□□□□□ -1.39
VPS28-204ENST00000526054 TSPEAR-AS2P59090 65 aa6.34□□□□□ -1.39
VPS28-204ENST00000526054 COX17Q14061 63 aa6.34□□□□□ -1.39
VPS28-204ENST00000526054 PCP2Q8IVA1 136 aa6.34□□□□□ -1.39
VPS28-204ENST00000526054 BOD1L2Q8IYS8 172 aa6.34□□□□□ -1.39
VPS28-204ENST00000526054 ZNF625Q96I27 306 aaPredicted RBP6.34□□□□□ -1.39
VPS28-204ENST00000526054 MIEN1Q9BRT3 115 aa6.34□□□□□ -1.39
VPS28-204ENST00000526054 MYMXA0A1B0GTQ4 84 aa6.33□□□□□ -1.4
VPS28-204ENST00000526054 PFN2P35080 140 aa6.33□□□□□ -1.4
VPS28-204ENST00000526054 HERV-K104P63124 156 aa6.33□□□□□ -1.4
VPS28-204ENST00000526054 C9orf129Q5T035 196 aaKnown RBP6.33□□□□□ -1.4
VPS28-204ENST00000526054 FAM19A5Q7Z5A7 132 aaPredicted RBP6.33□□□□□ -1.4
VPS28-204ENST00000526054 TTTY13Q9BZ97 58 aa6.33□□□□□ -1.4
VPS28-204ENST00000526054 XAGE1AQ9HD64 81 aa6.33□□□□□ -1.4
VPS28-204ENST00000526054 NDUFA12Q9UI09 145 aa6.33□□□□□ -1.4
VPS28-204ENST00000526054 LRP2P98164 4655 aa6.32□□□□□ -1.4
VPS28-204ENST00000526054 FAM168BA1KXE4 195 aa6.32□□□□□ -1.4
VPS28-204ENST00000526054 LINC00587B1AMM8 73 aa6.32□□□□□ -1.4
VPS28-204ENST00000526054 MEIG1Q5JSS6 88 aa6.32□□□□□ -1.4
VPS28-204ENST00000526054 M0QXV9 152 aa6.31□□□□□ -1.4
VPS28-204ENST00000526054 SCGB1D4Q6XE38 83 aa6.31□□□□□ -1.4
VPS28-204ENST00000526054 PCP4L1A6NKN8 68 aa6.3□□□□□ -1.4
VPS28-204ENST00000526054 DDTP30046 118 aa6.3□□□□□ -1.4
VPS28-204ENST00000526054 LINC00158P58513 81 aa6.3□□□□□ -1.4
VPS28-204ENST00000526054 PRR3P79522 188 aaKnown RBP6.3□□□□□ -1.4
VPS28-204ENST00000526054 PHF5AQ7RTV0 110 aaKnown RBP6.3□□□□□ -1.4
VPS28-204ENST00000526054 TP73-AS1Q9UF72 201 aa6.3□□□□□ -1.4
VPS28-204ENST00000526054 C2orf91Q6ZV80 131 aa6.29□□□□□ -1.4
VPS28-204ENST00000526054 SND1-IT1Q9HBX3 110 aa6.29□□□□□ -1.4
VPS28-204ENST00000526054 A0A0J9YXY3 114 aa6.28□□□□□ -1.4
VPS28-204ENST00000526054 A0A0U1RRA0 63 aa6.28□□□□□ -1.4
VPS28-204ENST00000526054 SMIM13P0DJ93 91 aa6.28□□□□□ -1.4
VPS28-204ENST00000526054 UBE2BP63146 152 aa6.28□□□□□ -1.4
VPS28-204ENST00000526054 LBHQ53QV2 105 aaPredicted RBP6.28□□□□□ -1.4
VPS28-204ENST00000526054 KRTAP7-1Q8IUC3 87 aa6.28□□□□□ -1.4
VPS28-204ENST00000526054 NKAPP1Q8N9T2 125 aa6.28□□□□□ -1.4
VPS28-204ENST00000526054 HIGD1BQ9P298 99 aa6.28□□□□□ -1.4
VPS28-204ENST00000526054 TMEM238C9JI98 176 aa6.27□□□□□ -1.41
VPS28-204ENST00000526054 TIMM17BO60830 172 aa6.27□□□□□ -1.41
VPS28-204ENST00000526054 RPL24P83731 157 aaKnown RBP6.27□□□□□ -1.41
VPS28-204ENST00000526054 C22orf24Q9Y442 160 aa6.27□□□□□ -1.41
VPS28-204ENST00000526054 IGLV5-37A0A075B6J1 123 aa6.26□□□□□ -1.41
VPS28-204ENST00000526054 MRPL55Q7Z7F7 128 aaKnown RBP6.26□□□□□ -1.41
VPS28-204ENST00000526054 MIR7-3HGQ8N6C7 128 aa6.26□□□□□ -1.41
VPS28-204ENST00000526054 LINC01600Q96MT4 127 aa6.26□□□□□ -1.41
VPS28-204ENST00000526054 RNF213Q63HN8 5207 aa6.25□□□□□ -1.41
VPS28-204ENST00000526054 HSD52Q0P140 79 aa6.25□□□□□ -1.41
VPS28-204ENST00000526054 TAL2Q16559 108 aa6.25□□□□□ -1.41
VPS28-204ENST00000526054 SPANXB1Q9NS25 103 aaPredicted RBP6.25□□□□□ -1.41
VPS28-204ENST00000526054 PSORS1C2Q9UIG4 136 aa6.25□□□□□ -1.41
VPS28-204ENST00000526054 VPREB1P12018 145 aa6.24□□□□□ -1.41
VPS28-204ENST00000526054 CTAG1AP78358 180 aa6.24□□□□□ -1.41
VPS28-204ENST00000526054 SRSF9Q13242 221 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS28-204ENST00000526054 C1orf137Q5JT78 98 aa6.24□□□□□ -1.41
VPS28-204ENST00000526054 REG3GQ6UW15 175 aa6.24□□□□□ -1.41
VPS28-204ENST00000526054 Q6ZVH6 145 aa6.24□□□□□ -1.41
VPS28-204ENST00000526054 HIST1H4GQ99525 98 aa6.24□□□□□ -1.41
VPS28-204ENST00000526054 M0R143 59 aa6.23□□□□□ -1.41
VPS28-204ENST00000526054 SPINK6Q6UWN8 80 aa6.23□□□□□ -1.41
VPS28-204ENST00000526054 COPS9Q8WXC6 57 aa6.23□□□□□ -1.41
VPS28-204ENST00000526054 LINC00167Q96N53 147 aa6.23□□□□□ -1.41
VPS28-204ENST00000526054 LITAFQ99732 161 aa6.23□□□□□ -1.41
VPS28-204ENST00000526054 SPANXDQ9BXN6 97 aa6.23□□□□□ -1.41
VPS28-204ENST00000526054 SPANXCQ9NY87 97 aa6.23□□□□□ -1.41
VPS28-204ENST00000526054 GAGE10A6NGK3 116 aa6.22□□□□□ -1.41
VPS28-204ENST00000526054 DAND5Q8N907 189 aa6.22□□□□□ -1.41
VPS28-204ENST00000526054 IFITM1P13164 125 aa6.21□□□□□ -1.42
VPS28-204ENST00000526054 ADAMTSL4-AS1Q5T5F5 129 aa6.21□□□□□ -1.42
VPS28-204ENST00000526054 KRTAP11-1Q8IUC1 163 aa6.21□□□□□ -1.42
VPS28-204ENST00000526054 LOC107984156A0A0G2JMH3 177 aa6.2□□□□□ -1.42
VPS28-204ENST00000526054 RPL37AP8A6NKH3 93 aa6.2□□□□□ -1.42
VPS28-204ENST00000526054 M0R378 163 aa6.2□□□□□ -1.42
VPS28-204ENST00000526054 IGLV7-43P04211 117 aa6.2□□□□□ -1.42
VPS28-204ENST00000526054 HINT1P49773 126 aaPredicted RBP6.2□□□□□ -1.42
VPS28-204ENST00000526054 ARL17AQ8IVW1 177 aa6.2□□□□□ -1.42
VPS28-204ENST00000526054 CEND1Q8N111 149 aa6.2□□□□□ -1.42
VPS28-204ENST00000526054 Q8NDZ9 215 aa6.2□□□□□ -1.42
VPS28-204ENST00000526054 IGKV2-28A0A075B6P5 120 aa6.19□□□□□ -1.42
VPS28-204ENST00000526054 TMEM238LA0A1B0GVL6 79 aa6.19□□□□□ -1.42
VPS28-204ENST00000526054 A6NJY4 79 aa6.19□□□□□ -1.42
VPS28-204ENST00000526054 IGKV2D-28P01615 120 aa6.19□□□□□ -1.42
VPS28-204ENST00000526054 BVES-AS1Q5T3Y7 98 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms