RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 SCXQ7RTU7 201 aa10.29□□□□□ -0.76
LSM1-204ENST00000522515 KRTAP7-1Q8IUC3 87 aa10.29□□□□□ -0.76
LSM1-204ENST00000522515 CIRBP-AS1Q8TBR5 109 aa10.29□□□□□ -0.76
LSM1-204ENST00000522515 EIF4EBP3O60516 100 aaPredicted RBP10.28□□□□□ -0.76
LSM1-204ENST00000522515 XGP55808 180 aa10.27□□□□□ -0.76
LSM1-204ENST00000522515 SERTAD4-AS1Q5TG53 156 aa10.27□□□□□ -0.76
LSM1-204ENST00000522515 SOSTDC1Q6X4U4 206 aa10.27□□□□□ -0.76
LSM1-204ENST00000522515 PLAC8Q9NZF1 115 aa10.27□□□□□ -0.76
LSM1-204ENST00000522515 FAM19A5Q7Z5A7 132 aaPredicted RBP10.26□□□□□ -0.77
LSM1-204ENST00000522515 Q8NDZ9 215 aa10.26□□□□□ -0.77
LSM1-204ENST00000522515 SPANXDQ9BXN6 97 aa10.26□□□□□ -0.77
LSM1-204ENST00000522515 SPANXCQ9NY87 97 aa10.26□□□□□ -0.77
LSM1-204ENST00000522515 LOC107984156A0A0G2JMH3 177 aa10.26□□□□□ -0.77
LSM1-204ENST00000522515 C2orf91Q6ZV80 131 aa10.26□□□□□ -0.77
LSM1-204ENST00000522515 ARL17AQ8IVW1 177 aa10.26□□□□□ -0.77
LSM1-204ENST00000522515 LINC00308Q8TCZ7 52 aa10.26□□□□□ -0.77
LSM1-204ENST00000522515 PRO1933Q9H354 126 aa10.26□□□□□ -0.77
LSM1-204ENST00000522515 APOBP04114 4563 aaKnown RBP10.26□□□□□ -0.77
LSM1-204ENST00000522515 PLA2G2DQ9UNK4 145 aa10.25□□□□□ -0.77
LSM1-204ENST00000522515 EPM2AB3EWF7 344 aa10.24□□□□□ -0.77
LSM1-204ENST00000522515 MIEN1Q9BRT3 115 aa10.24□□□□□ -0.77
LSM1-204ENST00000522515 SPANXB1Q9NS25 103 aaPredicted RBP10.24□□□□□ -0.77
LSM1-204ENST00000522515 PCP4L1A6NKN8 68 aa10.23□□□□□ -0.77
LSM1-204ENST00000522515 VPREB1P12018 145 aa10.23□□□□□ -0.77
LSM1-204ENST00000522515 SRSF9Q13242 221 aaKnown RBP eCLIP10.23□□□□□ -0.77
LSM1-204ENST00000522515 Q6ZVH6 145 aa10.23□□□□□ -0.77
LSM1-204ENST00000522515 HIGD1BQ9P298 99 aa10.23□□□□□ -0.77
LSM1-204ENST00000522515 UQCR10Q9UDW1 63 aa10.23□□□□□ -0.77
LSM1-204ENST00000522515 CDK2AP2O75956 126 aa10.22□□□□□ -0.77
LSM1-204ENST00000522515 MUSTN1Q8IVN3 82 aa10.22□□□□□ -0.77
LSM1-204ENST00000522515 C22orf24Q9Y442 160 aa10.22□□□□□ -0.77
LSM1-204ENST00000522515 M0QXV9 152 aa10.21□□□□□ -0.78
LSM1-204ENST00000522515 IFITM1P13164 125 aa10.21□□□□□ -0.78
LSM1-204ENST00000522515 PRR3P79522 188 aaKnown RBP10.21□□□□□ -0.78
LSM1-204ENST00000522515 RPL24P83731 157 aaKnown RBP10.21□□□□□ -0.78
LSM1-204ENST00000522515 IGLV5-37A0A075B6J1 123 aa10.2□□□□□ -0.78
LSM1-204ENST00000522515 PHF5AQ7RTV0 110 aaKnown RBP10.2□□□□□ -0.78
LSM1-204ENST00000522515 HIST1H4GQ99525 98 aa10.2□□□□□ -0.78
LSM1-204ENST00000522515 NKAPP1Q8N9T2 125 aa10.19□□□□□ -0.78
LSM1-204ENST00000522515 TSTD3H0UI37 97 aa10.18□□□□□ -0.78
LSM1-204ENST00000522515 NDUFC2O95298 119 aa10.18□□□□□ -0.78
LSM1-204ENST00000522515 MRPL55Q7Z7F7 128 aaKnown RBP10.18□□□□□ -0.78
LSM1-204ENST00000522515 COPS9Q8WXC6 57 aa10.18□□□□□ -0.78
LSM1-204ENST00000522515 NCR3O14931 201 aa10.17□□□□□ -0.78
LSM1-204ENST00000522515 SMR3BP02814 79 aaPredicted RBP10.17□□□□□ -0.78
LSM1-204ENST00000522515 PPDPFQ9H3Y8 114 aa10.17□□□□□ -0.78
LSM1-204ENST00000522515 KIAA1109Q2LD37 5005 aa10.17□□□□□ -0.78
LSM1-204ENST00000522515 GAGE10A6NGK3 116 aa10.16□□□□□ -0.78
LSM1-204ENST00000522515 HNRNPA3P51991 378 aaKnown RBP10.16□□□□□ -0.78
LSM1-204ENST00000522515 C7orf33Q8WU49 177 aa10.16□□□□□ -0.78
LSM1-204ENST00000522515 LINC00167Q96N53 147 aa10.15□□□□□ -0.78
LSM1-204ENST00000522515 BIRC6Q9NR09 4857 aa10.14□□□□□ -0.79
LSM1-204ENST00000522515 M0R378 163 aa10.14□□□□□ -0.79
LSM1-204ENST00000522515 LBHQ53QV2 105 aaPredicted RBP10.14□□□□□ -0.79
LSM1-204ENST00000522515 KRTAP11-1Q8IUC1 163 aa10.14□□□□□ -0.79
LSM1-204ENST00000522515 IGKV2-28A0A075B6P5 120 aa10.14□□□□□ -0.79
LSM1-204ENST00000522515 A4D1N5 150 aa10.14□□□□□ -0.79
LSM1-204ENST00000522515 IGKV2D-28P01615 120 aa10.14□□□□□ -0.79
LSM1-204ENST00000522515 TAL2Q16559 108 aa10.14□□□□□ -0.79
LSM1-204ENST00000522515 HSPG2P98160 4391 aa10.13□□□□□ -0.79
LSM1-204ENST00000522515 TRBV10-2A0A0K0K1G8 114 aa10.13□□□□□ -0.79
LSM1-204ENST00000522515 RPL37AP8A6NKH3 93 aa10.13□□□□□ -0.79
LSM1-204ENST00000522515 UBE2BP63146 152 aa10.12□□□□□ -0.79
LSM1-204ENST00000522515 CEND1Q8N111 149 aa10.12□□□□□ -0.79
LSM1-204ENST00000522515 RYR1P21817 5038 aa10.12□□□□□ -0.79
LSM1-204ENST00000522515 DDTP30046 118 aa10.11□□□□□ -0.79
LSM1-204ENST00000522515 HSD52Q0P140 79 aa10.11□□□□□ -0.79
LSM1-204ENST00000522515 LINC00528Q8N1L1 170 aa10.11□□□□□ -0.79
LSM1-204ENST00000522515 IGLV1-50A0A075B6I6 118 aa10.09□□□□□ -0.79
LSM1-204ENST00000522515 TRBV10-3A0A0K0K1G6 114 aa10.09□□□□□ -0.79
LSM1-204ENST00000522515 LINC00337Q8N6G1 96 aa10.09□□□□□ -0.79
LSM1-204ENST00000522515 KRTAP17-1Q9BYP8 105 aa10.09□□□□□ -0.79
LSM1-204ENST00000522515 FAT1Q14517 4588 aa10.08□□□□□ -0.8
LSM1-204ENST00000522515 FXYD2P54710 66 aa10.08□□□□□ -0.8
LSM1-204ENST00000522515 CTAG1AP78358 180 aa10.08□□□□□ -0.8
LSM1-204ENST00000522515 S100A7L2Q5SY68 101 aa10.08□□□□□ -0.8
LSM1-204ENST00000522515 OR13C6PQ8NH95 151 aa10.08□□□□□ -0.8
LSM1-204ENST00000522515 PSORS1C2Q9UIG4 136 aa10.08□□□□□ -0.8
LSM1-204ENST00000522515 IGLV6-57P01721 117 aa10.07□□□□□ -0.8
LSM1-204ENST00000522515 A6NDN8 102 aa10.05□□□□□ -0.8
LSM1-204ENST00000522515 CFC1BP0CG36 223 aa10.05□□□□□ -0.8
LSM1-204ENST00000522515 CFC1P0CG37 223 aa10.05□□□□□ -0.8
LSM1-204ENST00000522515 TMEM126AQ9H061 195 aa10.05□□□□□ -0.8
LSM1-204ENST00000522515 RPL37AP61513 92 aaKnown RBP10.04□□□□□ -0.8
LSM1-204ENST00000522515 KCNQ1DNQ9H478 68 aa10.04□□□□□ -0.8
LSM1-204ENST00000522515 TRAV13-2A0A0B4J235 113 aa10.03□□□□□ -0.8
LSM1-204ENST00000522515 TMEM238LA0A1B0GVL6 79 aa10.03□□□□□ -0.8
LSM1-204ENST00000522515 A6NJY4 79 aa10.03□□□□□ -0.8
LSM1-204ENST00000522515 FAM229AH3BQW9 127 aa10.03□□□□□ -0.8
LSM1-204ENST00000522515 Q8N1X5 172 aa10.03□□□□□ -0.8
LSM1-204ENST00000522515 HINT1P49773 126 aaPredicted RBP10.02□□□□□ -0.81
LSM1-204ENST00000522515 C1orf137Q5JT78 98 aa10.02□□□□□ -0.81
LSM1-204ENST00000522515 BVES-AS1Q5T3Y7 98 aa10.02□□□□□ -0.81
LSM1-204ENST00000522515 Q5VSD8 79 aa10.02□□□□□ -0.81
LSM1-204ENST00000522515 REG3GQ6UW15 175 aa10.02□□□□□ -0.81
LSM1-204ENST00000522515 PRYO14603 147 aa10.01□□□□□ -0.81
LSM1-204ENST00000522515 KRTAP10-4P60372 401 aaPredicted RBP10.01□□□□□ -0.81
LSM1-204ENST00000522515 TRAV23DV6A0A075B6W5 121 aa10.01□□□□□ -0.81
LSM1-204ENST00000522515 A0A0B4J2C4 111 aa10.01□□□□□ -0.81
LSM1-204ENST00000522515 NHP2Q9NX24 153 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms