RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 FAM104BQ5XKR9 115 aa6□□□□□ -1.45
HDAC3-215ENST00000519474 NRACQ8N912 160 aa6□□□□□ -1.45
HDAC3-215ENST00000519474 SMIM26A0A096LP01 95 aa5.99□□□□□ -1.45
HDAC3-215ENST00000519474 hDV102S1A0JD36 115 aa5.99□□□□□ -1.45
HDAC3-215ENST00000519474 PLA2G1BP04054 148 aaKnown RBP5.99□□□□□ -1.45
HDAC3-215ENST00000519474 CNBPP62633 177 aaKnown RBP5.99□□□□□ -1.45
HDAC3-215ENST00000519474 CHCHD10Q8WYQ3 142 aaPredicted RBP5.99□□□□□ -1.45
HDAC3-215ENST00000519474 LINC01600Q96MT4 127 aa5.99□□□□□ -1.45
HDAC3-215ENST00000519474 CDC42SE2Q9NRR3 84 aa5.99□□□□□ -1.45
HDAC3-215ENST00000519474 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.99□□□□□ -1.45
HDAC3-215ENST00000519474 LINC00959A0A1B0GUT2 108 aa5.98□□□□□ -1.45
HDAC3-215ENST00000519474 C2orf91Q6ZV80 131 aa5.98□□□□□ -1.45
HDAC3-215ENST00000519474 PRR15Q8IV56 129 aa5.98□□□□□ -1.45
HDAC3-215ENST00000519474 C15orf56Q8N910 161 aa5.98□□□□□ -1.45
HDAC3-215ENST00000519474 HIGD1BQ9P298 99 aa5.98□□□□□ -1.45
HDAC3-215ENST00000519474 SUMO2P61956 95 aaKnown RBP5.97□□□□□ -1.45
HDAC3-215ENST00000519474 GNB1LQ9BYB4 327 aa5.97□□□□□ -1.45
HDAC3-215ENST00000519474 AP5S1Q9NUS5 200 aa5.97□□□□□ -1.45
HDAC3-215ENST00000519474 SERP1Q9Y6X1 66 aa5.97□□□□□ -1.45
HDAC3-215ENST00000519474 A0A1B0GXF2 115 aa5.96□□□□□ -1.46
HDAC3-215ENST00000519474 PPP1R17O96001 155 aa5.96□□□□□ -1.46
HDAC3-215ENST00000519474 CIRBPQ14011 172 aaKnown RBP5.96□□□□□ -1.46
HDAC3-215ENST00000519474 LINC01545Q5VT33 79 aa5.96□□□□□ -1.46
HDAC3-215ENST00000519474 PRR26Q8N8Z3 221 aa5.96□□□□□ -1.46
HDAC3-215ENST00000519474 FLG2Q5D862 2391 aaPredicted RBP5.95□□□□□ -1.46
HDAC3-215ENST00000519474 IGHV3-64A0A075B6Q5 118 aa5.95□□□□□ -1.46
HDAC3-215ENST00000519474 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.95□□□□□ -1.46
HDAC3-215ENST00000519474 TRBV7-6A0A0J9YX20 115 aa5.95□□□□□ -1.46
HDAC3-215ENST00000519474 FCER1GP30273 86 aa5.95□□□□□ -1.46
HDAC3-215ENST00000519474 CKS2P33552 79 aa5.95□□□□□ -1.46
HDAC3-215ENST00000519474 MRPS36P82909 103 aaKnown RBP5.95□□□□□ -1.46
HDAC3-215ENST00000519474 SS18Q15532 418 aa5.95□□□□□ -1.46
HDAC3-215ENST00000519474 HIGD2BQ4VC39 106 aa5.95□□□□□ -1.46
HDAC3-215ENST00000519474 PRSS3P2Q8NHM4 247 aa5.95□□□□□ -1.46
HDAC3-215ENST00000519474 FAM104AQ969W3 186 aa5.95□□□□□ -1.46
HDAC3-215ENST00000519474 C2orf48Q96LS8 159 aa5.95□□□□□ -1.46
HDAC3-215ENST00000519474 UBE2D4Q9Y2X8 147 aa5.95□□□□□ -1.46
HDAC3-215ENST00000519474 KRTAP29-1A8MX34 341 aaPredicted RBP5.94□□□□□ -1.46
HDAC3-215ENST00000519474 XCL1P47992 114 aa5.94□□□□□ -1.46
HDAC3-215ENST00000519474 MRPL18Q9H0U6 180 aaKnown RBP5.94□□□□□ -1.46
HDAC3-215ENST00000519474 A0A087WYN8 130 aa5.93□□□□□ -1.46
HDAC3-215ENST00000519474 GVQW2A0A096LPI5 108 aaPredicted RBP5.93□□□□□ -1.46
HDAC3-215ENST00000519474 NPYP01303 97 aa5.93□□□□□ -1.46
HDAC3-215ENST00000519474 CHTF8P0CG12 524 aa5.93□□□□□ -1.46
HDAC3-215ENST00000519474 HBBP68871 147 aa5.93□□□□□ -1.46
HDAC3-215ENST00000519474 COX6A2Q02221 97 aa5.93□□□□□ -1.46
HDAC3-215ENST00000519474 CEND1Q8N111 149 aa5.93□□□□□ -1.46
HDAC3-215ENST00000519474 LINC01561Q8N1V8 128 aa5.93□□□□□ -1.46
HDAC3-215ENST00000519474 TIMM21Q9BVV7 248 aa5.93□□□□□ -1.46
HDAC3-215ENST00000519474 IGHV1-58A0A0C4DH39 117 aa5.92□□□□□ -1.46
HDAC3-215ENST00000519474 D6R8Y8 96 aa5.92□□□□□ -1.46
HDAC3-215ENST00000519474 ATOX1O00244 68 aa5.92□□□□□ -1.46
HDAC3-215ENST00000519474 CXCL5P42830 114 aa5.92□□□□□ -1.46
HDAC3-215ENST00000519474 RNASE13Q5GAN3 156 aaKnown RBP5.92□□□□□ -1.46
HDAC3-215ENST00000519474 OPRPNQ99935 248 aaPredicted RBP5.92□□□□□ -1.46
HDAC3-215ENST00000519474 H3BT86 120 aa5.91□□□□□ -1.46
HDAC3-215ENST00000519474 SCGB1C2P0DMR2 95 aa5.91□□□□□ -1.46
HDAC3-215ENST00000519474 RPL37AP61513 92 aaKnown RBP5.91□□□□□ -1.46
HDAC3-215ENST00000519474 RPL39P62891 51 aaKnown RBP5.91□□□□□ -1.46
HDAC3-215ENST00000519474 SRSF9Q13242 221 aaKnown RBP eCLIP5.91□□□□□ -1.46
HDAC3-215ENST00000519474 ATP5L2Q7Z4Y8 100 aa5.91□□□□□ -1.46
HDAC3-215ENST00000519474 SPACA4Q8TDM5 124 aa5.91□□□□□ -1.46
HDAC3-215ENST00000519474 SMIM2Q9BVW6 85 aa5.91□□□□□ -1.46
HDAC3-215ENST00000519474 PLAC8Q9NZF1 115 aa5.91□□□□□ -1.46
HDAC3-215ENST00000519474 VPS13BQ7Z7G8 4022 aa5.9□□□□□ -1.46
HDAC3-215ENST00000519474 J3QL48 77 aa5.9□□□□□ -1.46
HDAC3-215ENST00000519474 IGKCP01834 107 aa5.9□□□□□ -1.46
HDAC3-215ENST00000519474 SRRM2Q9UQ35 2752 aaKnown RBP5.9□□□□□ -1.47
HDAC3-215ENST00000519474 EIF4EBP3O60516 100 aaPredicted RBP5.89□□□□□ -1.47
HDAC3-215ENST00000519474 ACYP1P07311 99 aa5.89□□□□□ -1.47
HDAC3-215ENST00000519474 NPC2P61916 151 aa5.89□□□□□ -1.47
HDAC3-215ENST00000519474 SCGB1D4Q6XE38 83 aa5.89□□□□□ -1.47
HDAC3-215ENST00000519474 C5orf38Q86SI9 138 aa5.89□□□□□ -1.47
HDAC3-215ENST00000519474 ORMDL3Q8N138 153 aa5.89□□□□□ -1.47
HDAC3-215ENST00000519474 IGLV4-69A0A075B6H9 119 aa5.88□□□□□ -1.47
HDAC3-215ENST00000519474 A0A096LNI7 61 aa5.88□□□□□ -1.47
HDAC3-215ENST00000519474 COX7A2LO14548 114 aa5.88□□□□□ -1.47
HDAC3-215ENST00000519474 SYCNQ0VAF6 134 aa5.88□□□□□ -1.47
HDAC3-215ENST00000519474 CHCHD1Q96BP2 118 aaKnown RBP5.88□□□□□ -1.47
HDAC3-215ENST00000519474 IGHV3OR16-9A0A0B4J2B5 98 aa5.87□□□□□ -1.47
HDAC3-215ENST00000519474 IGKV2-24A0A0C4DH68 120 aa5.87□□□□□ -1.47
HDAC3-215ENST00000519474 LOC389332A0A1B0GUA5 103 aa5.87□□□□□ -1.47
HDAC3-215ENST00000519474 BRK1Q8WUW1 75 aa5.87□□□□□ -1.47
HDAC3-215ENST00000519474 SMCPP49901 116 aaPredicted RBP5.86□□□□□ -1.47
HDAC3-215ENST00000519474 RBM12B-AS1Q9P1G2 102 aa5.86□□□□□ -1.47
HDAC3-215ENST00000519474 A0A1W2PNN7 141 aa5.85□□□□□ -1.47
HDAC3-215ENST00000519474 NDUFS5O43920 106 aa5.85□□□□□ -1.47
HDAC3-215ENST00000519474 TCL1BO95988 128 aa5.85□□□□□ -1.47
HDAC3-215ENST00000519474 Q8N8P6 123 aa5.85□□□□□ -1.47
HDAC3-215ENST00000519474 IGLV4-3A0A075B6K6 122 aa5.84□□□□□ -1.47
HDAC3-215ENST00000519474 LINC00242Q5T6M2 205 aa5.84□□□□□ -1.47
HDAC3-215ENST00000519474 ZC2HC1BQ5TFG8 222 aa5.84□□□□□ -1.47
HDAC3-215ENST00000519474 PCP2Q8IVA1 136 aa5.84□□□□□ -1.47
HDAC3-215ENST00000519474 CAMK2N2Q96S95 79 aa5.84□□□□□ -1.47
HDAC3-215ENST00000519474 LINC00474Q9P2X8 69 aa5.84□□□□□ -1.47
HDAC3-215ENST00000519474 A0A0J9YXV3 536 aa5.83□□□□□ -1.48
HDAC3-215ENST00000519474 IFI27P40305 119 aaPredicted RBP5.83□□□□□ -1.48
HDAC3-215ENST00000519474 ATP5EP56381 51 aaPredicted RBP5.83□□□□□ -1.48
HDAC3-215ENST00000519474 HIST1H4AP62805 103 aaKnown RBP5.83□□□□□ -1.48
HDAC3-215ENST00000519474 KIAA0087Q14695 138 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms