RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PDE6HQ13956 83 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 TMEM14CQ9P0S9 112 aa5.51□□□□□ -1.53
LIMCH1-219ENST00000514096 CLPSL2Q6UWE3 100 aa5.5□□□□□ -1.53
LIMCH1-219ENST00000514096 GFRA4Q9GZZ7 299 aa5.5□□□□□ -1.53
LIMCH1-219ENST00000514096 C11orf86A6NJI1 115 aa5.5□□□□□ -1.53
LIMCH1-219ENST00000514096 CCL18P55774 89 aa5.5□□□□□ -1.53
LIMCH1-219ENST00000514096 IGHV1-58A0A0C4DH39 117 aa5.49□□□□□ -1.53
LIMCH1-219ENST00000514096 LCE6AA0A183 80 aa5.49□□□□□ -1.53
LIMCH1-219ENST00000514096 C2orf66Q6UXQ4 117 aa5.49□□□□□ -1.53
LIMCH1-219ENST00000514096 KTN1-AS1Q86SY8 53 aa5.49□□□□□ -1.53
LIMCH1-219ENST00000514096 DNAH3Q8TD57 4116 aa5.49□□□□□ -1.53
LIMCH1-219ENST00000514096 PLECQ15149 4684 aaKnown RBP5.49□□□□□ -1.53
LIMCH1-219ENST00000514096 Q86TA4 180 aa5.49□□□□□ -1.53
LIMCH1-219ENST00000514096 FAM229BQ4G0N7 80 aa5.49□□□□□ -1.53
LIMCH1-219ENST00000514096 UPK3BQ9BT76 320 aa5.49□□□□□ -1.53
LIMCH1-219ENST00000514096 FLG2Q5D862 2391 aaPredicted RBP5.49□□□□□ -1.53
LIMCH1-219ENST00000514096 C9orf47Q6ZRZ4 202 aa5.48□□□□□ -1.53
LIMCH1-219ENST00000514096 ESRGQ1W209 222 aa5.48□□□□□ -1.53
LIMCH1-219ENST00000514096 Q8N3U1 123 aa5.48□□□□□ -1.53
LIMCH1-219ENST00000514096 VSIG2Q96IQ7 327 aa5.48□□□□□ -1.53
LIMCH1-219ENST00000514096 LINC00846Q9NV44 126 aa5.48□□□□□ -1.53
LIMCH1-219ENST00000514096 H7BZZ5 65 aa5.48□□□□□ -1.53
LIMCH1-219ENST00000514096 LYPD5Q6UWN5 251 aa5.48□□□□□ -1.53
LIMCH1-219ENST00000514096 RPL28P46779 137 aaKnown RBP5.47□□□□□ -1.53
LIMCH1-219ENST00000514096 HYDINQ4G0P3 5121 aa5.47□□□□□ -1.53
LIMCH1-219ENST00000514096 TRBV27A0A0K0K1C4 114 aa5.47□□□□□ -1.53
LIMCH1-219ENST00000514096 M0R378 163 aa5.47□□□□□ -1.53
LIMCH1-219ENST00000514096 LST1O00453 97 aa5.47□□□□□ -1.53
LIMCH1-219ENST00000514096 CD164L2Q6UWJ8 174 aa5.47□□□□□ -1.53
LIMCH1-219ENST00000514096 SCXQ7RTU7 201 aa5.47□□□□□ -1.53
LIMCH1-219ENST00000514096 PRR15Q8IV56 129 aa5.47□□□□□ -1.53
LIMCH1-219ENST00000514096 TRBV30A0A0K0K1B3 111 aa5.46□□□□□ -1.54
LIMCH1-219ENST00000514096 A6NED7 52 aa5.46□□□□□ -1.54
LIMCH1-219ENST00000514096 APLNQ9ULZ1 77 aa5.46□□□□□ -1.54
LIMCH1-219ENST00000514096 KLLNB2CW77 178 aa5.46□□□□□ -1.54
LIMCH1-219ENST00000514096 PSCAO43653 123 aa5.46□□□□□ -1.54
LIMCH1-219ENST00000514096 UBL5Q9BZL1 73 aa5.46□□□□□ -1.54
LIMCH1-219ENST00000514096 LYRM9A8MSI8 78 aa5.45□□□□□ -1.54
LIMCH1-219ENST00000514096 NCR3O14931 201 aa5.45□□□□□ -1.54
LIMCH1-219ENST00000514096 CRIP1P50238 77 aa5.45□□□□□ -1.54
LIMCH1-219ENST00000514096 UBE2BP63146 152 aa5.45□□□□□ -1.54
LIMCH1-219ENST00000514096 MRPS36P82909 103 aaKnown RBP5.45□□□□□ -1.54
LIMCH1-219ENST00000514096 KMT2AQ03164 3969 aa5.45□□□□□ -1.54
LIMCH1-219ENST00000514096 WFDC10BQ8IUB3 73 aa5.45□□□□□ -1.54
LIMCH1-219ENST00000514096 Q9H8V8 135 aa5.45□□□□□ -1.54
LIMCH1-219ENST00000514096 A8MU10 97 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 A8MUN3 132 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 LINC00588Q9Y4M8 146 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 DNAH7Q8WXX0 4024 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 A0A0A0MQY5 61 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 TSPEAR-AS2P59090 65 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 Q6ZSN1 163 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 IGLV2-11P01706 119 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 SLPIP03973 132 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 PIK3CD-AS1Q5SR53 167 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 C11orf72Q8NBR9 251 aa5.44□□□□□ -1.54
LIMCH1-219ENST00000514096 Q6ZRU5 148 aa5.43□□□□□ -1.54
LIMCH1-219ENST00000514096 NKAPP1Q8N9T2 125 aa5.43□□□□□ -1.54
LIMCH1-219ENST00000514096 PRO0255Q9UI72 69 aa5.43□□□□□ -1.54
LIMCH1-219ENST00000514096 IGLV10-54A0A075B6I4 117 aa5.43□□□□□ -1.54
LIMCH1-219ENST00000514096 Q6JHZ5 121 aa5.43□□□□□ -1.54
LIMCH1-219ENST00000514096 LINC00269Q8N2A0 174 aa5.43□□□□□ -1.54
LIMCH1-219ENST00000514096 OPRPNQ99935 248 aaPredicted RBP5.43□□□□□ -1.54
LIMCH1-219ENST00000514096 RPL39P62891 51 aaKnown RBP5.42□□□□□ -1.54
LIMCH1-219ENST00000514096 UBE2D4Q9Y2X8 147 aa5.42□□□□□ -1.54
LIMCH1-219ENST00000514096 DNAH10OSP0CZ25 163 aa5.42□□□□□ -1.54
LIMCH1-219ENST00000514096 RNASE3P12724 160 aaKnown RBP5.42□□□□□ -1.54
LIMCH1-219ENST00000514096 TRAV7A0A075B6U4 112 aa5.41□□□□□ -1.54
LIMCH1-219ENST00000514096 NDUFS5O43920 106 aa5.41□□□□□ -1.54
LIMCH1-219ENST00000514096 NDUFA12Q9UI09 145 aa5.41□□□□□ -1.54
LIMCH1-219ENST00000514096 ZNF575Q86XF7 245 aa5.41□□□□□ -1.54
LIMCH1-219ENST00000514096 EPPK1P58107 5090 aaKnown RBP5.41□□□□□ -1.54
LIMCH1-219ENST00000514096 K7EQD1 137 aa5.41□□□□□ -1.54
LIMCH1-219ENST00000514096 C1orf134Q5TEV5 83 aa5.41□□□□□ -1.54
LIMCH1-219ENST00000514096 RPL39LQ96EH5 51 aaKnown RBP5.41□□□□□ -1.54
LIMCH1-219ENST00000514096 TRAV13-2A0A0B4J235 113 aa5.4□□□□□ -1.54
LIMCH1-219ENST00000514096 UBE2AP49459 152 aa5.4□□□□□ -1.54
LIMCH1-219ENST00000514096 SMIM2Q9BVW6 85 aa5.4□□□□□ -1.54
LIMCH1-219ENST00000514096 KLK12Q9UKR0 248 aa5.4□□□□□ -1.54
LIMCH1-219ENST00000514096 FRAS1Q86XX4 4008 aa5.4□□□□□ -1.54
LIMCH1-219ENST00000514096 TNP2Q05952 138 aa5.4□□□□□ -1.54
LIMCH1-219ENST00000514096 PRAC1Q96KF2 57 aa5.4□□□□□ -1.54
LIMCH1-219ENST00000514096 IGKV2D-24A0A075B6R9 120 aa5.4□□□□□ -1.55
LIMCH1-219ENST00000514096 A0A0J9YXV3 536 aa5.4□□□□□ -1.55
LIMCH1-219ENST00000514096 HCG22E2RYF7 251 aa5.4□□□□□ -1.55
LIMCH1-219ENST00000514096 PPP1R17O96001 155 aa5.39□□□□□ -1.55
LIMCH1-219ENST00000514096 SUMO2P61956 95 aaKnown RBP5.39□□□□□ -1.55
LIMCH1-219ENST00000514096 SACSQ9NZJ4 4579 aa5.39□□□□□ -1.55
LIMCH1-219ENST00000514096 PRR15LQ9BU68 103 aa5.39□□□□□ -1.55
LIMCH1-219ENST00000514096 KRTAP1-5Q9BYS1 174 aa5.39□□□□□ -1.55
LIMCH1-219ENST00000514096 A0A0J9YXY3 114 aa5.38□□□□□ -1.55
LIMCH1-219ENST00000514096 ANGP03950 147 aaKnown RBP5.38□□□□□ -1.55
LIMCH1-219ENST00000514096 LINC00315P59091 139 aa5.38□□□□□ -1.55
LIMCH1-219ENST00000514096 TMEM141Q96I45 108 aa5.38□□□□□ -1.55
LIMCH1-219ENST00000514096 LCA10Q71F78 164 aa5.37□□□□□ -1.55
LIMCH1-219ENST00000514096 RPL36AP83881 106 aaKnown RBP5.37□□□□□ -1.55
LIMCH1-219ENST00000514096 Q6ZVQ6 151 aa5.37□□□□□ -1.55
LIMCH1-219ENST00000514096 RPL36ALQ969Q0 106 aaKnown RBP5.37□□□□□ -1.55
LIMCH1-219ENST00000514096 NBDYA0A0U1RRE5 68 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms