RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ABCA3Q99758 1704 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 MARF1Q9Y4F3 1742 aaKnown RBP0.42□□□□□ -2.34
VPS50-219ENST00000495039 DEFB131BA0A096LNP1 70 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 TRAV13-2A0A0B4J235 113 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 FAM236AA0A1B0GUQ0 79 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 FAM236BA0A1B0GV22 79 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 LOC101927531A0A1B0GV80 90 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 A0A1B0GV90 55 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 ZNF815PA8K554 130 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 F8VRH5 84 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 H3BUT2 72 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 SPINK8P0C7L1 97 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 SMIM6P0DI80 62 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 IGLC2P0DOY2 106 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 IGLC3P0DOY3 106 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 COX8AP10176 69 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 IFITM1P13164 125 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 PLNP26678 52 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 POLR2KP53803 58 aaKnown RBP0.42□□□□□ -2.34
VPS50-219ENST00000495039 DEFB1P60022 68 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 NPC2P61916 151 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 HSD52Q0P140 79 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 ATXN8Q156A1 80 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 DEFB136Q30KP8 78 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 TDRG1Q3Y452 100 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 BVES-AS1Q5T3Y7 98 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 CFAP126Q5VTH2 177 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 SFTA2Q6UW10 78 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 C10orf99Q6UWK7 81 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 WFDC9Q8NEX5 89 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 DEFB105AQ8NG35 78 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 C18orf32Q8TCD1 76 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 COX7B2Q8TF08 81 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 TMEM263Q8WUH6 116 aaKnown RBP0.42□□□□□ -2.34
VPS50-219ENST00000495039 RPL39LQ96EH5 51 aaKnown RBP0.42□□□□□ -2.34
VPS50-219ENST00000495039 DSCR8Q96T75 97 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 SPANXDQ9BXN6 97 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 PRO1854Q9UHT4 67 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 NDUFA12Q9UI09 145 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 SPCS1Q9Y6A9 102 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 AFDNP55196 1824 aaKnown RBP0.42□□□□□ -2.34
VPS50-219ENST00000495039 COL4A6Q14031 1691 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 ZNF831Q5JPB2 1677 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 LOC285556D6RIA3 1793 aa0.42□□□□□ -2.34
VPS50-219ENST00000495039 DOCK1Q14185 1865 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 UBR3Q6ZT12 1888 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 LY75O60449 1722 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 KIAA1551Q9HCM1 1747 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 NRXN2Q9P2S2 1712 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 ZNF236Q9UL36 1845 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 LINC00959A0A1B0GUT2 108 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 ETDCA0A1B0GVM5 59 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 hADV29S1A0JD25 119 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 IGIPA6NJ69 53 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 F8WEM9 126 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 K7EP13 123 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 M0QY20 66 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 NDUFA1O15239 70 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 DLEU1O43261 78 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 NDUFB1O75438 58 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 LY6G6CO95867 125 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 ACYP1P07311 99 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 COX7BP24311 80 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 RPL39P62891 51 aaKnown RBP0.41□□□□□ -2.34
VPS50-219ENST00000495039 HAMPP81172 84 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 RBM3P98179 157 aaKnown RBP0.41□□□□□ -2.34
VPS50-219ENST00000495039 COX6A2Q02221 97 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 KLKP1Q107X0 134 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 COX17Q14061 63 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 NREPQ16612 68 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 KLK9Q2XQG4 91 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 DEFB135Q30KP9 77 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 LELP1Q5T871 98 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 CLPSL2Q6UWE3 100 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 Q6ZUT4 128 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 LINC00308Q8TCZ7 52 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 SMIM2Q9BVW6 85 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 UBL5Q9BZL1 73 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 C10orf95Q9H7T3 257 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 CDC42SE2Q9NRR3 84 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 HIGD1BQ9P298 99 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 UBE2D4Q9Y2X8 147 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 A0A1B0GUL6 1792 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 RGPD3A6NKT7 1758 aaPredicted RBP0.41□□□□□ -2.34
VPS50-219ENST00000495039 RGPD4Q7Z3J3 1758 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 FER1L6Q2WGJ9 1857 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 USP24Q9UPU5 2620 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 QSER1Q2KHR3 1735 aa0.41□□□□□ -2.34
VPS50-219ENST00000495039 PTPRFP10586 1907 aa0.4□□□□□ -2.34
VPS50-219ENST00000495039 MYH8P13535 1937 aa0.4□□□□□ -2.34
VPS50-219ENST00000495039 MYH4Q9Y623 1939 aa0.4□□□□□ -2.34
VPS50-219ENST00000495039 RREB1Q92766 1687 aa0.4□□□□□ -2.34
VPS50-219ENST00000495039 CITO14578 2027 aa0.4□□□□□ -2.34
VPS50-219ENST00000495039 SIPA1L3O60292 1781 aaPredicted RBP0.4□□□□□ -2.35
VPS50-219ENST00000495039 ANKRD31Q8N7Z5 1873 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 A0A096LNI7 61 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 H3BNG1 76 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 K7EP34 96 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 UBE2D1P51668 147 aa0.4□□□□□ -2.35
VPS50-219ENST00000495039 UBE2D3P61077 147 aa0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 142.6 ms