RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 PPDPFQ9H3Y8 114 aa8.83□□□□□ -1
C9orf3-221ENST00000489562 PLA2G2DQ9UNK4 145 aa8.83□□□□□ -1
C9orf3-221ENST00000489562 SRSF9Q13242 221 aaKnown RBP eCLIP8.82□□□□□ -1
C9orf3-221ENST00000489562 TP73-AS1Q9UF72 201 aa8.82□□□□□ -1
C9orf3-221ENST00000489562 PANO1I0J062 215 aa8.81□□□□□ -1
C9orf3-221ENST00000489562 RPL24P83731 157 aaKnown RBP8.81□□□□□ -1
C9orf3-221ENST00000489562 LINC00308Q8TCZ7 52 aa8.81□□□□□ -1
C9orf3-221ENST00000489562 FAM30AQ9NZY2 134 aa8.81□□□□□ -1
C9orf3-221ENST00000489562 A0A087WYN8 130 aa8.8□□□□□ -1
C9orf3-221ENST00000489562 TSTD3H0UI37 97 aa8.8□□□□□ -1
C9orf3-221ENST00000489562 C2orf91Q6ZV80 131 aa8.8□□□□□ -1
C9orf3-221ENST00000489562 PLAC8Q9NZF1 115 aa8.8□□□□□ -1
C9orf3-221ENST00000489562 EPM2AB3EWF7 344 aa8.79□□□□□ -1
C9orf3-221ENST00000489562 TAL2Q16559 108 aa8.79□□□□□ -1
C9orf3-221ENST00000489562 HIST1H4GQ99525 98 aa8.79□□□□□ -1
C9orf3-221ENST00000489562 PRO1933Q9H354 126 aa8.79□□□□□ -1
C9orf3-221ENST00000489562 IGLV5-37A0A075B6J1 123 aa8.78□□□□□ -1
C9orf3-221ENST00000489562 NDUFC2O95298 119 aa8.78□□□□□ -1
C9orf3-221ENST00000489562 SOSTDC1Q6X4U4 206 aa8.78□□□□□ -1
C9orf3-221ENST00000489562 FAM19A5Q7Z5A7 132 aaPredicted RBP8.78□□□□□ -1
C9orf3-221ENST00000489562 NKAPP1Q8N9T2 125 aa8.78□□□□□ -1
C9orf3-221ENST00000489562 DNAH5Q8TE73 4624 aa8.77□□□□□ -1
C9orf3-221ENST00000489562 PKHD1P08F94 4074 aa8.77□□□□□ -1.01
C9orf3-221ENST00000489562 A0A1W2PNN7 141 aa8.77□□□□□ -1.01
C9orf3-221ENST00000489562 FAM168BA1KXE4 195 aa8.77□□□□□ -1.01
C9orf3-221ENST00000489562 VPREB1P12018 145 aa8.77□□□□□ -1.01
C9orf3-221ENST00000489562 HNRNPA3P51991 378 aaKnown RBP8.77□□□□□ -1.01
C9orf3-221ENST00000489562 NPC2P61916 151 aa8.77□□□□□ -1.01
C9orf3-221ENST00000489562 SCXQ7RTU7 201 aa8.77□□□□□ -1.01
C9orf3-221ENST00000489562 CIRBP-AS1Q8TBR5 109 aa8.77□□□□□ -1.01
C9orf3-221ENST00000489562 M0QXV9 152 aa8.76□□□□□ -1.01
C9orf3-221ENST00000489562 CDK2AP2O75956 126 aa8.76□□□□□ -1.01
C9orf3-221ENST00000489562 SERTAD4-AS1Q5TG53 156 aa8.76□□□□□ -1.01
C9orf3-221ENST00000489562 MUSTN1Q8IVN3 82 aa8.76□□□□□ -1.01
C9orf3-221ENST00000489562 EIF4EBP3O60516 100 aaPredicted RBP8.75□□□□□ -1.01
C9orf3-221ENST00000489562 LBHQ53QV2 105 aaPredicted RBP8.75□□□□□ -1.01
C9orf3-221ENST00000489562 KRTAP7-1Q8IUC3 87 aa8.75□□□□□ -1.01
C9orf3-221ENST00000489562 TRBV10-2A0A0K0K1G8 114 aa8.74□□□□□ -1.01
C9orf3-221ENST00000489562 XGP55808 180 aa8.74□□□□□ -1.01
C9orf3-221ENST00000489562 HSD52Q0P140 79 aa8.74□□□□□ -1.01
C9orf3-221ENST00000489562 C22orf24Q9Y442 160 aa8.74□□□□□ -1.01
C9orf3-221ENST00000489562 M0R378 163 aa8.73□□□□□ -1.01
C9orf3-221ENST00000489562 MRPL55Q7Z7F7 128 aaKnown RBP8.73□□□□□ -1.01
C9orf3-221ENST00000489562 Q8NDZ9 215 aa8.73□□□□□ -1.01
C9orf3-221ENST00000489562 CEND1Q8N111 149 aa8.72□□□□□ -1.01
C9orf3-221ENST00000489562 TMEM238LA0A1B0GVL6 79 aa8.71□□□□□ -1.02
C9orf3-221ENST00000489562 A6NJY4 79 aa8.71□□□□□ -1.02
C9orf3-221ENST00000489562 C7orf33Q8WU49 177 aa8.71□□□□□ -1.02
C9orf3-221ENST00000489562 A4D1N5 150 aa8.7□□□□□ -1.02
C9orf3-221ENST00000489562 NCR3O14931 201 aa8.7□□□□□ -1.02
C9orf3-221ENST00000489562 HAMPP81172 84 aa8.7□□□□□ -1.02
C9orf3-221ENST00000489562 PHF5AQ7RTV0 110 aaKnown RBP8.7□□□□□ -1.02
C9orf3-221ENST00000489562 DYNC1H1Q14204 4646 aaKnown RBP8.7□□□□□ -1.02
C9orf3-221ENST00000489562 UBE2BP63146 152 aa8.69□□□□□ -1.02
C9orf3-221ENST00000489562 PRR3P79522 188 aaKnown RBP8.69□□□□□ -1.02
C9orf3-221ENST00000489562 LINC00167Q96N53 147 aa8.69□□□□□ -1.02
C9orf3-221ENST00000489562 CBY1Q9Y3M2 126 aa8.69□□□□□ -1.02
C9orf3-221ENST00000489562 LRP1BQ9NZR2 4599 aa8.69□□□□□ -1.02
C9orf3-221ENST00000489562 IGKV2-28A0A075B6P5 120 aa8.68□□□□□ -1.02
C9orf3-221ENST00000489562 IGKV2D-28P01615 120 aa8.68□□□□□ -1.02
C9orf3-221ENST00000489562 DDTP30046 118 aa8.68□□□□□ -1.02
C9orf3-221ENST00000489562 S100A7L2Q5SY68 101 aa8.68□□□□□ -1.02
C9orf3-221ENST00000489562 TRAV13-2A0A0B4J235 113 aa8.67□□□□□ -1.02
C9orf3-221ENST00000489562 GAGE10A6NGK3 116 aa8.67□□□□□ -1.02
C9orf3-221ENST00000489562 M0R143 59 aa8.67□□□□□ -1.02
C9orf3-221ENST00000489562 TMEM126AQ9H061 195 aa8.67□□□□□ -1.02
C9orf3-221ENST00000489562 DNAH8Q96JB1 4490 aa8.66□□□□□ -1.02
C9orf3-221ENST00000489562 IGLV1-50A0A075B6I6 118 aa8.66□□□□□ -1.02
C9orf3-221ENST00000489562 CTAG1AP78358 180 aa8.66□□□□□ -1.02
C9orf3-221ENST00000489562 TRBV10-3A0A0K0K1G6 114 aa8.65□□□□□ -1.02
C9orf3-221ENST00000489562 RPL37AP8A6NKH3 93 aa8.65□□□□□ -1.02
C9orf3-221ENST00000489562 IGLV6-57P01721 117 aa8.65□□□□□ -1.02
C9orf3-221ENST00000489562 FXYD2P54710 66 aa8.65□□□□□ -1.02
C9orf3-221ENST00000489562 LINC00337Q8N6G1 96 aa8.65□□□□□ -1.02
C9orf3-221ENST00000489562 OR13C6PQ8NH95 151 aa8.65□□□□□ -1.02
C9orf3-221ENST00000489562 A0A0B4J2C4 111 aa8.64□□□□□ -1.03
C9orf3-221ENST00000489562 PRYO14603 147 aa8.64□□□□□ -1.03
C9orf3-221ENST00000489562 LINC00528Q8N1L1 170 aa8.64□□□□□ -1.03
C9orf3-221ENST00000489562 A6NDN8 102 aa8.63□□□□□ -1.03
C9orf3-221ENST00000489562 RAB37Q96AX2 223 aa8.63□□□□□ -1.03
C9orf3-221ENST00000489562 KCNQ1DNQ9H478 68 aa8.63□□□□□ -1.03
C9orf3-221ENST00000489562 CFC1BP0CG36 223 aa8.62□□□□□ -1.03
C9orf3-221ENST00000489562 CFC1P0CG37 223 aa8.62□□□□□ -1.03
C9orf3-221ENST00000489562 BVES-AS1Q5T3Y7 98 aa8.62□□□□□ -1.03
C9orf3-221ENST00000489562 TRAV23DV6A0A075B6W5 121 aa8.61□□□□□ -1.03
C9orf3-221ENST00000489562 SMR3BP02814 79 aaPredicted RBP8.61□□□□□ -1.03
C9orf3-221ENST00000489562 HINT1P49773 126 aaPredicted RBP8.61□□□□□ -1.03
C9orf3-221ENST00000489562 REG3GQ6UW15 175 aa8.61□□□□□ -1.03
C9orf3-221ENST00000489562 NHP2Q9NX24 153 aaKnown RBP8.61□□□□□ -1.03
C9orf3-221ENST00000489562 PSORS1C2Q9UIG4 136 aa8.61□□□□□ -1.03
C9orf3-221ENST00000489562 A0A1B0GWB2 263 aa8.6□□□□□ -1.03
C9orf3-221ENST00000489562 FAM229AH3BQW9 127 aa8.6□□□□□ -1.03
C9orf3-221ENST00000489562 RPL37AP61513 92 aaKnown RBP8.6□□□□□ -1.03
C9orf3-221ENST00000489562 KRTAP11-1Q8IUC1 163 aa8.6□□□□□ -1.03
C9orf3-221ENST00000489562 RPL13AP40429 203 aaKnown RBP8.59□□□□□ -1.03
C9orf3-221ENST00000489562 PRO1854Q9UHT4 67 aa8.59□□□□□ -1.03
C9orf3-221ENST00000489562 APOBP04114 4563 aaKnown RBP8.59□□□□□ -1.03
C9orf3-221ENST00000489562 BCE1O60756 84 aa8.58□□□□□ -1.04
C9orf3-221ENST00000489562 PLA2G1BP04054 148 aaKnown RBP8.58□□□□□ -1.04
C9orf3-221ENST00000489562 SPRR1AP35321 89 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 112.6 ms