RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 A0A1W2PNN7 141 aa5.21□□□□□ -1.58
SF3A1-208ENST00000485618 ZNF815PA8K554 130 aa5.21□□□□□ -1.58
SF3A1-208ENST00000485618 J3QL48 77 aa5.21□□□□□ -1.58
SF3A1-208ENST00000485618 SMIM13P0DJ93 91 aa5.21□□□□□ -1.58
SF3A1-208ENST00000485618 UBE2BP63146 152 aa5.21□□□□□ -1.58
SF3A1-208ENST00000485618 SCGB1D4Q6XE38 83 aa5.21□□□□□ -1.58
SF3A1-208ENST00000485618 SND1-IT1Q9HBX3 110 aa5.21□□□□□ -1.58
SF3A1-208ENST00000485618 TMA7Q9Y2S6 64 aaKnown RBP5.21□□□□□ -1.58
SF3A1-208ENST00000485618 M0QXV9 152 aa5.2□□□□□ -1.58
SF3A1-208ENST00000485618 TIMM17BO60830 172 aa5.2□□□□□ -1.58
SF3A1-208ENST00000485618 C9orf129Q5T035 196 aaKnown RBP5.2□□□□□ -1.58
SF3A1-208ENST00000485618 ATOH7Q8N100 152 aa5.2□□□□□ -1.58
SF3A1-208ENST00000485618 C22orf24Q9Y442 160 aa5.2□□□□□ -1.58
SF3A1-208ENST00000485618 FAT1Q14517 4588 aa5.19□□□□□ -1.58
SF3A1-208ENST00000485618 A0A0J9YXY3 114 aa5.19□□□□□ -1.58
SF3A1-208ENST00000485618 A0A0U1RRA0 63 aa5.19□□□□□ -1.58
SF3A1-208ENST00000485618 TMEM238C9JI98 176 aa5.19□□□□□ -1.58
SF3A1-208ENST00000485618 TSPEAR-AS2P59090 65 aa5.19□□□□□ -1.58
SF3A1-208ENST00000485618 Q6ZVH6 145 aa5.19□□□□□ -1.58
SF3A1-208ENST00000485618 MRPL55Q7Z7F7 128 aaKnown RBP5.19□□□□□ -1.58
SF3A1-208ENST00000485618 MIR7-3HGQ8N6C7 128 aa5.19□□□□□ -1.58
SF3A1-208ENST00000485618 CBY1Q9Y3M2 126 aa5.19□□□□□ -1.58
SF3A1-208ENST00000485618 IGLV5-37A0A075B6J1 123 aa5.18□□□□□ -1.58
SF3A1-208ENST00000485618 IGKV2D-26A0A0A0MRZ7 120 aa5.18□□□□□ -1.58
SF3A1-208ENST00000485618 FAM168BA1KXE4 195 aa5.18□□□□□ -1.58
SF3A1-208ENST00000485618 BOD1L2Q8IYS8 172 aa5.18□□□□□ -1.58
SF3A1-208ENST00000485618 M0R378 163 aa5.17□□□□□ -1.58
SF3A1-208ENST00000485618 JOSD1Q15040 202 aaPredicted RBP5.17□□□□□ -1.58
SF3A1-208ENST00000485618 PHF5AQ7RTV0 110 aaKnown RBP5.17□□□□□ -1.58
SF3A1-208ENST00000485618 VAMP8Q9BV40 100 aa5.17□□□□□ -1.58
SF3A1-208ENST00000485618 FLG2Q5D862 2391 aaPredicted RBP5.16□□□□□ -1.58
SF3A1-208ENST00000485618 DNAH8Q96JB1 4490 aa5.16□□□□□ -1.58
SF3A1-208ENST00000485618 LOC107984156A0A0G2JMH3 177 aa5.16□□□□□ -1.58
SF3A1-208ENST00000485618 IFITM1P13164 125 aa5.16□□□□□ -1.58
SF3A1-208ENST00000485618 ANKRD39Q53RE8 183 aa5.16□□□□□ -1.58
SF3A1-208ENST00000485618 SERTAD4-AS1Q5TG53 156 aa5.16□□□□□ -1.58
SF3A1-208ENST00000485618 ARL17AQ8IVW1 177 aa5.16□□□□□ -1.58
SF3A1-208ENST00000485618 RNF213Q63HN8 5207 aa5.16□□□□□ -1.58
SF3A1-208ENST00000485618 TRBV10-2A0A0K0K1G8 114 aa5.15□□□□□ -1.59
SF3A1-208ENST00000485618 NDUFC2O95298 119 aa5.15□□□□□ -1.59
SF3A1-208ENST00000485618 VPREB1P12018 145 aa5.15□□□□□ -1.59
SF3A1-208ENST00000485618 PRR3P79522 188 aaKnown RBP5.15□□□□□ -1.59
SF3A1-208ENST00000485618 SRSF9Q13242 221 aaKnown RBP eCLIP5.15□□□□□ -1.59
SF3A1-208ENST00000485618 C1orf137Q5JT78 98 aa5.15□□□□□ -1.59
SF3A1-208ENST00000485618 LINC00518Q8N0U6 118 aa5.15□□□□□ -1.59
SF3A1-208ENST00000485618 LINC00167Q96N53 147 aa5.15□□□□□ -1.59
SF3A1-208ENST00000485618 SPANXB1Q9NS25 103 aaPredicted RBP5.15□□□□□ -1.59
SF3A1-208ENST00000485618 PSORS1C2Q9UIG4 136 aa5.15□□□□□ -1.59
SF3A1-208ENST00000485618 GAGE10A6NGK3 116 aa5.14□□□□□ -1.59
SF3A1-208ENST00000485618 S100A7L2Q5SY68 101 aa5.14□□□□□ -1.59
SF3A1-208ENST00000485618 SPINK6Q6UWN8 80 aa5.14□□□□□ -1.59
SF3A1-208ENST00000485618 DAND5Q8N907 189 aa5.14□□□□□ -1.59
SF3A1-208ENST00000485618 SPANXDQ9BXN6 97 aa5.14□□□□□ -1.59
SF3A1-208ENST00000485618 PPDPFQ9H3Y8 114 aa5.14□□□□□ -1.59
SF3A1-208ENST00000485618 SPANXCQ9NY87 97 aa5.14□□□□□ -1.59
SF3A1-208ENST00000485618 VPS13BQ7Z7G8 4022 aa5.13□□□□□ -1.59
SF3A1-208ENST00000485618 RPL37AP8A6NKH3 93 aa5.13□□□□□ -1.59
SF3A1-208ENST00000485618 DLEU1O43261 78 aa5.13□□□□□ -1.59
SF3A1-208ENST00000485618 COX8AP10176 69 aa5.13□□□□□ -1.59
SF3A1-208ENST00000485618 RPL28P46779 137 aaKnown RBP5.13□□□□□ -1.59
SF3A1-208ENST00000485618 HINT1P49773 126 aaPredicted RBP5.13□□□□□ -1.59
SF3A1-208ENST00000485618 SPATA45Q537H7 98 aa5.13□□□□□ -1.59
SF3A1-208ENST00000485618 REG3GQ6UW15 175 aa5.13□□□□□ -1.59
SF3A1-208ENST00000485618 PCP2Q8IVA1 136 aa5.13□□□□□ -1.59
SF3A1-208ENST00000485618 LINC00308Q8TCZ7 52 aa5.13□□□□□ -1.59
SF3A1-208ENST00000485618 DIRC1Q969H9 104 aa5.13□□□□□ -1.59
SF3A1-208ENST00000485618 IGLV1-50A0A075B6I6 118 aa5.12□□□□□ -1.59
SF3A1-208ENST00000485618 KRTAP29-1A8MX34 341 aaPredicted RBP5.12□□□□□ -1.59
SF3A1-208ENST00000485618 BCE1O60756 84 aa5.12□□□□□ -1.59
SF3A1-208ENST00000485618 ADAMTSL4-AS1Q5T5F5 129 aa5.12□□□□□ -1.59
SF3A1-208ENST00000485618 KRTAP7-1Q8IUC3 87 aa5.12□□□□□ -1.59
SF3A1-208ENST00000485618 PAM16Q9Y3D7 125 aa5.12□□□□□ -1.59
SF3A1-208ENST00000485618 IGKV2-28A0A075B6P5 120 aa5.11□□□□□ -1.59
SF3A1-208ENST00000485618 NCR3O14931 201 aa5.11□□□□□ -1.59
SF3A1-208ENST00000485618 IGKV2D-28P01615 120 aa5.11□□□□□ -1.59
SF3A1-208ENST00000485618 IGLV7-43P04211 117 aa5.11□□□□□ -1.59
SF3A1-208ENST00000485618 UBE2AP49459 152 aa5.11□□□□□ -1.59
SF3A1-208ENST00000485618 HNRNPA3P51991 378 aaKnown RBP5.11□□□□□ -1.59
SF3A1-208ENST00000485618 SLC25A34Q6PIV7 304 aa5.11□□□□□ -1.59
SF3A1-208ENST00000485618 LITAFQ99732 161 aa5.11□□□□□ -1.59
SF3A1-208ENST00000485618 TTTY13Q9BZ97 58 aa5.11□□□□□ -1.59
SF3A1-208ENST00000485618 TMEM126AQ9H061 195 aa5.11□□□□□ -1.59
SF3A1-208ENST00000485618 PRYO14603 147 aa5.1□□□□□ -1.59
SF3A1-208ENST00000485618 DDTP30046 118 aa5.1□□□□□ -1.59
SF3A1-208ENST00000485618 NPC2P61916 151 aa5.1□□□□□ -1.59
SF3A1-208ENST00000485618 OR13C6PQ8NH95 151 aa5.1□□□□□ -1.59
SF3A1-208ENST00000485618 HIST1H4GQ99525 98 aa5.1□□□□□ -1.59
SF3A1-208ENST00000485618 KCNQ1DNQ9H478 68 aa5.1□□□□□ -1.59
SF3A1-208ENST00000485618 TRAV13-2A0A0B4J235 113 aa5.09□□□□□ -1.59
SF3A1-208ENST00000485618 ETDCA0A1B0GVM5 59 aa5.09□□□□□ -1.59
SF3A1-208ENST00000485618 ZNF861PO60384 105 aa5.09□□□□□ -1.59
SF3A1-208ENST00000485618 OXTP01178 125 aa5.09□□□□□ -1.59
SF3A1-208ENST00000485618 C14orf144Q96I85 54 aa5.09□□□□□ -1.59
SF3A1-208ENST00000485618 KRTAP10-4P60372 401 aaPredicted RBP5.08□□□□□ -1.6
SF3A1-208ENST00000485618 PYY3Q5JQD4 70 aa5.08□□□□□ -1.6
SF3A1-208ENST00000485618 FAM19A1Q7Z5A9 133 aa5.08□□□□□ -1.6
SF3A1-208ENST00000485618 MUSTN1Q8IVN3 82 aa5.08□□□□□ -1.6
SF3A1-208ENST00000485618 HIGD1BQ9P298 99 aa5.08□□□□□ -1.6
SF3A1-208ENST00000485618 TRAV23DV6A0A075B6W5 121 aa5.07□□□□□ -1.6
SF3A1-208ENST00000485618 TRBV10-3A0A0K0K1G6 114 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms