RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 C2orf91Q6ZV80 131 aa7.81□□□□□ -1.16
PTPRF-213ENST00000481019 CAMK2N2Q96S95 79 aa7.81□□□□□ -1.16
PTPRF-213ENST00000481019 FAT3Q8TDW7 4589 aa7.81□□□□□ -1.16
PTPRF-213ENST00000481019 TP73-AS1Q9UF72 201 aa7.8□□□□□ -1.16
PTPRF-213ENST00000481019 PKIGQ9Y2B9 76 aa7.8□□□□□ -1.16
PTPRF-213ENST00000481019 LINC00158P58513 81 aa7.79□□□□□ -1.16
PTPRF-213ENST00000481019 RPL24P83731 157 aaKnown RBP7.79□□□□□ -1.16
PTPRF-213ENST00000481019 SPANXDQ9BXN6 97 aa7.79□□□□□ -1.16
PTPRF-213ENST00000481019 PPDPFQ9H3Y8 114 aa7.79□□□□□ -1.16
PTPRF-213ENST00000481019 SPANXCQ9NY87 97 aa7.79□□□□□ -1.16
PTPRF-213ENST00000481019 ERG28Q9UKR5 140 aa7.79□□□□□ -1.16
PTPRF-213ENST00000481019 LRP1Q07954 4544 aaKnown RBP7.78□□□□□ -1.16
PTPRF-213ENST00000481019 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.78□□□□□ -1.16
PTPRF-213ENST00000481019 PTTG1IPP53801 180 aa7.78□□□□□ -1.16
PTPRF-213ENST00000481019 SYCNQ0VAF6 134 aa7.78□□□□□ -1.16
PTPRF-213ENST00000481019 RNF151Q2KHN1 245 aa7.78□□□□□ -1.16
PTPRF-213ENST00000481019 CEND1Q8N111 149 aa7.78□□□□□ -1.16
PTPRF-213ENST00000481019 LINC00528Q8N1L1 170 aa7.78□□□□□ -1.16
PTPRF-213ENST00000481019 HERC1Q15751 4861 aa7.77□□□□□ -1.17
PTPRF-213ENST00000481019 A6NDN8 102 aa7.77□□□□□ -1.17
PTPRF-213ENST00000481019 KRTAP10-4P60372 401 aaPredicted RBP7.77□□□□□ -1.17
PTPRF-213ENST00000481019 Q6ZRU5 148 aa7.77□□□□□ -1.17
PTPRF-213ENST00000481019 A0A096LNI7 61 aa7.76□□□□□ -1.17
PTPRF-213ENST00000481019 SMIM13P0DJ93 91 aa7.76□□□□□ -1.17
PTPRF-213ENST00000481019 LBHQ53QV2 105 aaPredicted RBP7.76□□□□□ -1.17
PTPRF-213ENST00000481019 C2orf82Q6UX34 121 aa7.76□□□□□ -1.17
PTPRF-213ENST00000481019 SPACA4Q8TDM5 124 aa7.76□□□□□ -1.17
PTPRF-213ENST00000481019 CARD19Q96LW7 228 aa7.76□□□□□ -1.17
PTPRF-213ENST00000481019 FAM229AH3BQW9 127 aa7.75□□□□□ -1.17
PTPRF-213ENST00000481019 PFN2P35080 140 aa7.75□□□□□ -1.17
PTPRF-213ENST00000481019 C10orf25Q5T742 122 aa7.75□□□□□ -1.17
PTPRF-213ENST00000481019 UNQ6190/PRO20217Q6UXQ8 127 aa7.75□□□□□ -1.17
PTPRF-213ENST00000481019 FLG2Q5D862 2391 aaPredicted RBP7.74□□□□□ -1.17
PTPRF-213ENST00000481019 A0A087WYN8 130 aa7.74□□□□□ -1.17
PTPRF-213ENST00000481019 IGKV2-24A0A0C4DH68 120 aa7.74□□□□□ -1.17
PTPRF-213ENST00000481019 HINT1P49773 126 aaPredicted RBP7.74□□□□□ -1.17
PTPRF-213ENST00000481019 BVES-AS1Q5T3Y7 98 aa7.74□□□□□ -1.17
PTPRF-213ENST00000481019 LITAFQ99732 161 aa7.74□□□□□ -1.17
PTPRF-213ENST00000481019 INAFM2P0DMQ5 153 aa7.73□□□□□ -1.17
PTPRF-213ENST00000481019 MUSTN1Q8IVN3 82 aa7.73□□□□□ -1.17
PTPRF-213ENST00000481019 MIR7-3HGQ8N6C7 128 aa7.73□□□□□ -1.17
PTPRF-213ENST00000481019 A0A0U1RRA0 63 aa7.72□□□□□ -1.17
PTPRF-213ENST00000481019 NDUFC2-KCTD14E9PQ53 114 aa7.72□□□□□ -1.17
PTPRF-213ENST00000481019 BATFQ16520 125 aa7.72□□□□□ -1.17
PTPRF-213ENST00000481019 COL5A1-AS1Q5SY13 56 aa7.72□□□□□ -1.17
PTPRF-213ENST00000481019 ADAMTSL4-AS1Q5T5F5 129 aa7.72□□□□□ -1.17
PTPRF-213ENST00000481019 LINC00308Q8TCZ7 52 aa7.72□□□□□ -1.17
PTPRF-213ENST00000481019 C6orf48Q9UBA6 75 aa7.72□□□□□ -1.17
PTPRF-213ENST00000481019 LOC107984156A0A0G2JMH3 177 aa7.71□□□□□ -1.18
PTPRF-213ENST00000481019 TLX1NBP0CAT3 122 aa7.71□□□□□ -1.18
PTPRF-213ENST00000481019 ARL17AQ8IVW1 177 aa7.71□□□□□ -1.18
PTPRF-213ENST00000481019 PLAC8Q9NZF1 115 aa7.71□□□□□ -1.18
PTPRF-213ENST00000481019 DPH3Q96FX2 82 aa7.7□□□□□ -1.18
PTPRF-213ENST00000481019 LOC107984640A0A0U1RRK4 108 aa7.69□□□□□ -1.18
PTPRF-213ENST00000481019 NDUFC2O95298 119 aa7.69□□□□□ -1.18
PTPRF-213ENST00000481019 GAGE2BQ13066 116 aa7.69□□□□□ -1.18
PTPRF-213ENST00000481019 RAB37Q96AX2 223 aa7.69□□□□□ -1.18
PTPRF-213ENST00000481019 SNHG12Q9BXW3 62 aa7.69□□□□□ -1.18
PTPRF-213ENST00000481019 A0A1W2PNN7 141 aa7.68□□□□□ -1.18
PTPRF-213ENST00000481019 A4D1N5 150 aa7.68□□□□□ -1.18
PTPRF-213ENST00000481019 PLA2G1BP04054 148 aaKnown RBP7.68□□□□□ -1.18
PTPRF-213ENST00000481019 FXYD2P54710 66 aa7.68□□□□□ -1.18
PTPRF-213ENST00000481019 C9orf116Q5BN46 136 aaPredicted RBP7.68□□□□□ -1.18
PTPRF-213ENST00000481019 DAND5Q8N907 189 aa7.68□□□□□ -1.18
PTPRF-213ENST00000481019 SND1-IT1Q9HBX3 110 aa7.68□□□□□ -1.18
PTPRF-213ENST00000481019 TRAV13-2A0A0B4J235 113 aa7.67□□□□□ -1.18
PTPRF-213ENST00000481019 A0A0B4J2C4 111 aa7.67□□□□□ -1.18
PTPRF-213ENST00000481019 RPL37AP61513 92 aaKnown RBP7.67□□□□□ -1.18
PTPRF-213ENST00000481019 NHP2Q9NX24 153 aaKnown RBP7.67□□□□□ -1.18
PTPRF-213ENST00000481019 LINC00474Q9P2X8 69 aa7.67□□□□□ -1.18
PTPRF-213ENST00000481019 CBY1Q9Y3M2 126 aa7.67□□□□□ -1.18
PTPRF-213ENST00000481019 A0A1B0GWB2 263 aa7.66□□□□□ -1.18
PTPRF-213ENST00000481019 NPC2P61916 151 aa7.66□□□□□ -1.18
PTPRF-213ENST00000481019 RPL18AQ02543 176 aaKnown RBP7.66□□□□□ -1.18
PTPRF-213ENST00000481019 Q6ZRP5 223 aa7.66□□□□□ -1.18
PTPRF-213ENST00000481019 PRO1854Q9UHT4 67 aa7.66□□□□□ -1.18
PTPRF-213ENST00000481019 FAM168BA1KXE4 195 aa7.64□□□□□ -1.19
PTPRF-213ENST00000481019 CFC1BP0CG36 223 aa7.64□□□□□ -1.19
PTPRF-213ENST00000481019 CFC1P0CG37 223 aa7.64□□□□□ -1.19
PTPRF-213ENST00000481019 TRBV10-2A0A0K0K1G8 114 aa7.63□□□□□ -1.19
PTPRF-213ENST00000481019 GAGE2EQ4V326 116 aa7.63□□□□□ -1.19
PTPRF-213ENST00000481019 KRTAP7-1Q8IUC3 87 aa7.63□□□□□ -1.19
PTPRF-213ENST00000481019 GAGE2DQ9UEU5 116 aa7.63□□□□□ -1.19
PTPRF-213ENST00000481019 PLA2G2DQ9UNK4 145 aa7.63□□□□□ -1.19
PTPRF-213ENST00000481019 DMBT1Q9UGM3 2413 aaPredicted RBP7.62□□□□□ -1.19
PTPRF-213ENST00000481019 LYRM7Q5U5X0 104 aa7.62□□□□□ -1.19
PTPRF-213ENST00000481019 SOSTDC1Q6X4U4 206 aa7.62□□□□□ -1.19
PTPRF-213ENST00000481019 TMEM126AQ9H061 195 aa7.62□□□□□ -1.19
PTPRF-213ENST00000481019 TNXBP22105 4242 aa7.62□□□□□ -1.19
PTPRF-213ENST00000481019 XAGE1AQ9HD64 81 aa7.61□□□□□ -1.19
PTPRF-213ENST00000481019 COX6CP09669 75 aa7.6□□□□□ -1.19
PTPRF-213ENST00000481019 S100A7L2Q5SY68 101 aa7.6□□□□□ -1.19
PTPRF-213ENST00000481019 C9orf129Q5T035 196 aaKnown RBP7.6□□□□□ -1.19
PTPRF-213ENST00000481019 PHF5AQ7RTV0 110 aaKnown RBP7.6□□□□□ -1.19
PTPRF-213ENST00000481019 KRTAP11-1Q8IUC1 163 aa7.6□□□□□ -1.19
PTPRF-213ENST00000481019 C9orf118A6NHY6 69 aa7.59□□□□□ -1.19
PTPRF-213ENST00000481019 M0R378 163 aa7.59□□□□□ -1.19
PTPRF-213ENST00000481019 PRR3P79522 188 aaKnown RBP7.59□□□□□ -1.19
PTPRF-213ENST00000481019 Q1RN00 199 aa7.59□□□□□ -1.19
PTPRF-213ENST00000481019 NKAPP1Q8N9T2 125 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 267 ms