RNA–Protein interactions for RNA: ENST00000471978.5

C9orf3-213, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-213ENST00000471978 SNAPINO95295 136 aa13.17□□□□□ -0.3
C9orf3-213ENST00000471978 M0R378 163 aa13.16□□□□□ -0.3
C9orf3-213ENST00000471978 LINC00158P58513 81 aa13.15□□□□□ -0.3
C9orf3-213ENST00000471978 NDUFA5Q16718 116 aa13.15□□□□□ -0.3
C9orf3-213ENST00000471978 SVBPQ8N300 66 aa13.15□□□□□ -0.3
C9orf3-213ENST00000471978 IGKV2D-26A0A0A0MRZ7 120 aa13.14□□□□□ -0.31
C9orf3-213ENST00000471978 LINC00304Q8N9R0 145 aa13.14□□□□□ -0.31
C9orf3-213ENST00000471978 TMEM223A0PJW6 202 aa13.12□□□□□ -0.31
C9orf3-213ENST00000471978 CHCHD1Q96BP2 118 aaKnown RBP13.12□□□□□ -0.31
C9orf3-213ENST00000471978 TRAV12-1A0A0B4J245 112 aa13.11□□□□□ -0.31
C9orf3-213ENST00000471978 A0A0U1RRA0 63 aa13.11□□□□□ -0.31
C9orf3-213ENST00000471978 CBLN2Q8IUK8 224 aa13.11□□□□□ -0.31
C9orf3-213ENST00000471978 IFI27L1Q96BM0 104 aa13.11□□□□□ -0.31
C9orf3-213ENST00000471978 PLEKHB2Q96CS7 222 aa13.1□□□□□ -0.31
C9orf3-213ENST00000471978 RETNLBQ9BQ08 111 aa13.09□□□□□ -0.31
C9orf3-213ENST00000471978 YPEL4Q96NS1 127 aa13.08□□□□□ -0.32
C9orf3-213ENST00000471978 HIGD2AQ9BW72 106 aa13.08□□□□□ -0.32
C9orf3-213ENST00000471978 ATP6V1G1O75348 118 aa13.06□□□□□ -0.32
C9orf3-213ENST00000471978 SMIM13P0DJ93 91 aa13.06□□□□□ -0.32
C9orf3-213ENST00000471978 MEIG1Q5JSS6 88 aa13.04□□□□□ -0.32
C9orf3-213ENST00000471978 BOD1L2Q8IYS8 172 aa13.03□□□□□ -0.32
C9orf3-213ENST00000471978 C3orf22Q8N5N4 141 aa13.03□□□□□ -0.32
C9orf3-213ENST00000471978 FAM19A2Q8N3H0 131 aa13.02□□□□□ -0.33
C9orf3-213ENST00000471978 HSBP1O75506 76 aa13.01□□□□□ -0.33
C9orf3-213ENST00000471978 HERV-K104P63124 156 aa13.01□□□□□ -0.33
C9orf3-213ENST00000471978 CTAG1AP78358 180 aa13.01□□□□□ -0.33
C9orf3-213ENST00000471978 MIR7-3HGQ8N6C7 128 aa13.01□□□□□ -0.33
C9orf3-213ENST00000471978 NCR3O14931 201 aa13□□□□□ -0.33
C9orf3-213ENST00000471978 SPRR4Q96PI1 79 aa13□□□□□ -0.33
C9orf3-213ENST00000471978 A0A0U1RQV1 116 aa12.99□□□□□ -0.33
C9orf3-213ENST00000471978 PRYO14603 147 aa12.99□□□□□ -0.33
C9orf3-213ENST00000471978 NDUFA12Q9UI09 145 aa12.99□□□□□ -0.33
C9orf3-213ENST00000471978 LINC00587B1AMM8 73 aa12.98□□□□□ -0.33
C9orf3-213ENST00000471978 H0Y8G0 127 aa12.98□□□□□ -0.33
C9orf3-213ENST00000471978 ZNF706Q9Y5V0 76 aaPredicted RBP12.98□□□□□ -0.33
C9orf3-213ENST00000471978 IGLV7-46A0A075B6I9 117 aa12.97□□□□□ -0.33
C9orf3-213ENST00000471978 MYMXA0A1B0GTQ4 84 aa12.96□□□□□ -0.33
C9orf3-213ENST00000471978 KCNQ1DNQ9H478 68 aa12.96□□□□□ -0.33
C9orf3-213ENST00000471978 TPRXLQ17RH7 258 aa12.95□□□□□ -0.34
C9orf3-213ENST00000471978 LINC00337Q8N6G1 96 aa12.95□□□□□ -0.34
C9orf3-213ENST00000471978 MAP1LC3CQ9BXW4 147 aa12.95□□□□□ -0.34
C9orf3-213ENST00000471978 CDIP1Q9H305 208 aa12.95□□□□□ -0.34
C9orf3-213ENST00000471978 SPRR1AP35321 89 aa12.94□□□□□ -0.34
C9orf3-213ENST00000471978 SPAG11AQ6PDA7 123 aa12.94□□□□□ -0.34
C9orf3-213ENST00000471978 ETDCA0A1B0GVM5 59 aa12.93□□□□□ -0.34
C9orf3-213ENST00000471978 TRGC2P03986 189 aa12.93□□□□□ -0.34
C9orf3-213ENST00000471978 TRBV10-3A0A0K0K1G6 114 aa12.92□□□□□ -0.34
C9orf3-213ENST00000471978 LEPROTL1O95214 131 aa12.92□□□□□ -0.34
C9orf3-213ENST00000471978 SMCR5Q8TEV8 140 aa12.92□□□□□ -0.34
C9orf3-213ENST00000471978 KRTAP4-16G5E9R7 235 aaPredicted RBP12.91□□□□□ -0.34
C9orf3-213ENST00000471978 TSPEAR-AS2P59090 65 aa12.91□□□□□ -0.34
C9orf3-213ENST00000471978 LEPROTO15243 131 aa12.9□□□□□ -0.34
C9orf3-213ENST00000471978 C4orf48Q5BLP8 95 aa12.9□□□□□ -0.34
C9orf3-213ENST00000471978 MUC17Q685J3 4493 aa12.9□□□□□ -0.34
C9orf3-213ENST00000471978 SERF1AO75920 110 aa12.89□□□□□ -0.35
C9orf3-213ENST00000471978 PLNP26678 52 aa12.89□□□□□ -0.35
C9orf3-213ENST00000471978 S100A12P80511 92 aa12.89□□□□□ -0.35
C9orf3-213ENST00000471978 DAND5Q8N907 189 aa12.89□□□□□ -0.35
C9orf3-213ENST00000471978 PPDPFQ9H3Y8 114 aa12.89□□□□□ -0.35
C9orf3-213ENST00000471978 LINC00310P59036 64 aa12.88□□□□□ -0.35
C9orf3-213ENST00000471978 Q8NBF4 154 aa12.87□□□□□ -0.35
C9orf3-213ENST00000471978 LOC107984156A0A0G2JMH3 177 aa12.86□□□□□ -0.35
C9orf3-213ENST00000471978 ARL17AQ8IVW1 177 aa12.86□□□□□ -0.35
C9orf3-213ENST00000471978 FAT4Q6V0I7 4981 aa12.86□□□□□ -0.35
C9orf3-213ENST00000471978 J3QQQ9 107 aa12.85□□□□□ -0.35
C9orf3-213ENST00000471978 HSPB8Q9UJY1 196 aa12.85□□□□□ -0.35
C9orf3-213ENST00000471978 B5MCH6 92 aa12.84□□□□□ -0.35
C9orf3-213ENST00000471978 DPM2O94777 84 aa12.84□□□□□ -0.35
C9orf3-213ENST00000471978 FABP4P15090 132 aa12.84□□□□□ -0.35
C9orf3-213ENST00000471978 DDTP30046 118 aa12.84□□□□□ -0.35
C9orf3-213ENST00000471978 HERVK_113P61574 105 aa12.84□□□□□ -0.35
C9orf3-213ENST00000471978 TRBV10-2A0A0K0K1G8 114 aa12.83□□□□□ -0.36
C9orf3-213ENST00000471978 LINC00483Q53H64 154 aa12.83□□□□□ -0.36
C9orf3-213ENST00000471978 PMCHL2Q9BQD1 86 aa12.83□□□□□ -0.36
C9orf3-213ENST00000471978 NMUP48645 174 aa12.82□□□□□ -0.36
C9orf3-213ENST00000471978 GAGE2AQ6NT46 116 aa12.82□□□□□ -0.36
C9orf3-213ENST00000471978 FP248Q71RG6 208 aaPredicted RBP12.82□□□□□ -0.36
C9orf3-213ENST00000471978 IGKCP01834 107 aa12.81□□□□□ -0.36
C9orf3-213ENST00000471978 LGALS3P17931 250 aaKnown RBP12.81□□□□□ -0.36
C9orf3-213ENST00000471978 MIEN1Q9BRT3 115 aa12.81□□□□□ -0.36
C9orf3-213ENST00000471978 ERC2-IT1O76042 136 aa12.8□□□□□ -0.36
C9orf3-213ENST00000471978 SPANXB1Q9NS25 103 aaPredicted RBP12.8□□□□□ -0.36
C9orf3-213ENST00000471978 SPINK1P00995 79 aa12.79□□□□□ -0.36
C9orf3-213ENST00000471978 S100A7L2Q5SY68 101 aa12.77□□□□□ -0.37
C9orf3-213ENST00000471978 Q9BRP9 147 aa12.77□□□□□ -0.37
C9orf3-213ENST00000471978 IGLV9-49A0A0B4J1Y8 123 aa12.76□□□□□ -0.37
C9orf3-213ENST00000471978 NDUFC2O95298 119 aa12.76□□□□□ -0.37
C9orf3-213ENST00000471978 Q6ZRX8 168 aa12.76□□□□□ -0.37
C9orf3-213ENST00000471978 IGLV6-57P01721 117 aa12.75□□□□□ -0.37
C9orf3-213ENST00000471978 MOBPQ13875 183 aa12.75□□□□□ -0.37
C9orf3-213ENST00000471978 LCE2AQ5TA79 106 aaPredicted RBP12.74□□□□□ -0.37
C9orf3-213ENST00000471978 COLCA2A8K830 154 aa12.73□□□□□ -0.37
C9orf3-213ENST00000471978 TRAV23DV6A0A075B6W5 121 aa12.72□□□□□ -0.37
C9orf3-213ENST00000471978 A0A0J9YXY3 114 aa12.72□□□□□ -0.37
C9orf3-213ENST00000471978 NPC2P61916 151 aa12.72□□□□□ -0.37
C9orf3-213ENST00000471978 KRTAP13-3Q3SY46 172 aa12.72□□□□□ -0.37
C9orf3-213ENST00000471978 SSBP3-AS1Q7Z2R9 100 aa12.72□□□□□ -0.37
C9orf3-213ENST00000471978 SLC7A5P1Q8MH63 180 aa12.72□□□□□ -0.37
C9orf3-213ENST00000471978 ADAMTSL4-AS1Q5T5F5 129 aa12.71□□□□□ -0.37
C9orf3-213ENST00000471978 SOSTDC1Q6X4U4 206 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms